Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/fcf662ae6339b120c02f256f4330fe/786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/0136b3bdbbee13230998fd30f03b59/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/0136b3bdbbee13230998fd30f03b59/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/b1323af45f295bddd05dd1a7292603/786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam ==> STAGING COMPLETE (6 inputs) /usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory May 28, 2026 10:29:51 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Thu May 28 22:29:51 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_3_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Thu May 28 22:29:52 GMT 2026] Executing as ?@nf-6f0136b3bdbbee13230998fd30f03b59-56163-v59kb on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXXsRpldE/786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXsRpldE/786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam INFO 2026-05-28 22:29:54 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-05-28 22:30:09 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 14s. Last read position: chr1:1,049,333 INFO 2026-05-28 22:30:27 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 18s. Last read position: chr1:1,478,725 INFO 2026-05-28 22:30:36 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 9s. Last read position: chr1:2,515,649 INFO 2026-05-28 22:30:49 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 12s. Last read position: chr1:7,785,565 INFO 2026-05-28 22:30:59 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 9s. Last read position: chr1:9,264,386 INFO 2026-05-28 22:31:12 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 13s. Last read position: chr1:11,127,094 INFO 2026-05-28 22:31:32 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 20s. Last read position: chr1:13,779,640 INFO 2026-05-28 22:31:40 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 8s. Last read position: chr1:16,138,274 INFO 2026-05-28 22:31:51 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 10s. Last read position: chr1:18,691,936 INFO 2026-05-28 22:32:18 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 26s. Last read position: chr1:19,243,661 INFO 2026-05-28 22:32:37 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 19s. Last read position: chr1:21,829,584 INFO 2026-05-28 22:32:47 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 9s. Last read position: chr1:23,816,716 INFO 2026-05-28 22:32:56 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 9s. Last read position: chr1:26,554,632 INFO 2026-05-28 22:33:09 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 12s. Last read position: chr1:27,914,133 INFO 2026-05-28 22:33:25 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 16s. Last read position: chr1:31,364,103 INFO 2026-05-28 22:33:50 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 24s. Last read position: chr1:32,672,685 INFO 2026-05-28 22:34:03 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 13s. Last read position: chr1:35,389,951 INFO 2026-05-28 22:34:18 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 14s. Last read position: chr1:36,462,101 INFO 2026-05-28 22:35:28 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 70s. Last read position: chr1:39,361,467 INFO 2026-05-28 22:37:28 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 119s. Last read position: chr1:39,966,868 INFO 2026-05-28 22:37:42 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 14s. Last read position: chr1:42,278,774 INFO 2026-05-28 22:38:00 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 18s. Last read position: chr1:43,448,415 INFO 2026-05-28 22:38:23 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 23s. Last read position: chr1:44,778,107 INFO 2026-05-28 22:38:43 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 19s. Last read position: chr1:46,260,894 INFO 2026-05-28 22:39:00 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 17s. Last read position: chr1:52,416,690 INFO 2026-05-28 22:39:16 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 15s. Last read position: chr1:55,178,116 INFO 2026-05-28 22:39:42 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 26s. Last read position: chr1:67,686,037 INFO 2026-05-28 22:40:04 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 22s. Last read position: chr1:85,580,921 INFO 2026-05-28 22:40:14 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 9s. Last read position: chr1:92,844,089 INFO 2026-05-28 22:40:22 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 7s. Last read position: chr1:97,595,108 INFO 2026-05-28 22:41:03 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 41s. Last read position: chr1:103,014,548 INFO 2026-05-28 22:41:35 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 31s. Last read position: chr1:109,324,957 INFO 2026-05-28 22:41:55 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 19s. Last read position: chr1:112,416,154 INFO 2026-05-28 22:42:11 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 16s. Last read position: chr1:114,424,638 INFO 2026-05-28 22:42:26 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 15s. Last read position: chr1:116,389,598 INFO 2026-05-28 22:42:38 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 11s. Last read position: chr1:116,967,056 INFO 2026-05-28 22:43:04 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 26s. Last read position: chr1:119,743,896 INFO 2026-05-28 22:43:18 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 14s. Last read position: chr1:119,918,410 INFO 2026-05-28 22:43:29 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 10s. Last read position: chr1:119,926,525 INFO 2026-05-28 22:43:40 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 11s. Last read position: chr1:119,955,115 INFO 2026-05-28 22:43:59 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 19s. Last read position: chr1:120,005,459 INFO 2026-05-28 22:44:08 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 8s. Last read position: chr1:120,543,965 INFO 2026-05-28 22:44:16 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 8s. Last read position: chr1:144,897,121 INFO 2026-05-28 22:44:26 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 10s. Last read position: chr1:146,189,255 INFO 2026-05-28 22:44:41 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 15s. Last read position: chr1:148,607,660 INFO 2026-05-28 22:45:04 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 22s. Last read position: chr1:149,480,823 INFO 2026-05-28 22:45:05 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr1:149,887,011 INFO 2026-05-28 22:45:16 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 10s. Last read position: chr1:150,967,861 INFO 2026-05-28 22:45:25 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 8s. Last read position: chr1:152,217,981 INFO 2026-05-28 22:45:33 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 7s. Last read position: chr1:153,962,695 INFO 2026-05-28 22:45:49 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 16s. Last read position: chr1:154,586,231 INFO 2026-05-28 22:46:27 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 37s. Last read position: chr1:155,057,953 INFO 2026-05-28 22:46:50 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 22s. Last read position: chr1:155,433,407 INFO 2026-05-28 22:47:14 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 24s. Last read position: chr1:155,921,411 INFO 2026-05-28 22:47:33 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 18s. Last read position: chr1:156,136,317 INFO 2026-05-28 22:47:54 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 21s. Last read position: chr1:156,669,519 INFO 2026-05-28 22:47:58 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 3s. Last read position: chr1:158,088,423 INFO 2026-05-28 22:48:17 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 19s. Last read position: chr1:161,229,807 INFO 2026-05-28 22:48:29 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 11s. Last read position: chr1:169,111,422 INFO 2026-05-28 22:48:43 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 14s. Last read position: chr1:173,780,215 INFO 2026-05-28 22:48:53 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 9s. Last read position: chr1:181,002,689 INFO 2026-05-28 22:49:03 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 10s. Last read position: chr1:186,314,669 INFO 2026-05-28 22:49:13 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 10s. Last read position: chr1:197,122,205 INFO 2026-05-28 22:49:22 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 8s. Last read position: chr1:202,731,021 INFO 2026-05-28 22:49:35 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 13s. Last read position: chr1:205,269,692 INFO 2026-05-28 22:49:41 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 6s. Last read position: chr1:211,312,857 INFO 2026-05-28 22:49:47 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 5s. Last read position: chr1:214,657,244 INFO 2026-05-28 22:49:54 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 7s. Last read position: chr1:224,183,257 INFO 2026-05-28 22:50:04 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 10s. Last read position: chr1:225,887,851 INFO 2026-05-28 22:50:23 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 18s. Last read position: chr1:228,308,310 INFO 2026-05-28 22:50:30 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 7s. Last read position: chr1:234,607,331 INFO 2026-05-28 22:50:47 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 17s. Last read position: chr1:243,191,070 INFO 2026-05-28 22:51:04 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 16s. Last read position: chr1:246,876,050 INFO 2026-05-28 22:51:15 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 11s. Last read position: chr2:9,490,372 INFO 2026-05-28 22:51:27 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 12s. Last read position: chr2:15,330,687 INFO 2026-05-28 22:51:39 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 11s. Last read position: chr2:24,691,611 INFO 2026-05-28 22:51:52 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 13s. Last read position: chr2:27,037,629 INFO 2026-05-28 22:52:04 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 11s. Last read position: chr2:27,801,472 INFO 2026-05-28 22:52:10 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 5s. Last read position: chr2:28,779,016 INFO 2026-05-28 22:52:20 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 9s. Last read position: chr2:32,206,858 INFO 2026-05-28 22:52:27 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 7s. Last read position: chr2:32,916,261 INFO 2026-05-28 22:52:34 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 6s. Last read position: chr2:32,916,264 INFO 2026-05-28 22:52:37 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,406 INFO 2026-05-28 22:52:38 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,411 INFO 2026-05-28 22:52:45 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 6s. Last read position: chr2:37,138,329 INFO 2026-05-28 22:52:54 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:23:00s. Time for last 1,000,000: 9s. Last read position: chr2:43,560,233 INFO 2026-05-28 22:53:07 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 12s. Last read position: chr2:48,376,230 INFO 2026-05-28 22:53:20 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:23:26s. Time for last 1,000,000: 13s. Last read position: chr2:55,222,596 INFO 2026-05-28 22:53:54 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 33s. Last read position: chr2:61,331,273 INFO 2026-05-28 22:54:17 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 23s. Last read position: chr2:68,138,766 INFO 2026-05-28 22:54:35 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:24:40s. Time for last 1,000,000: 17s. Last read position: chr2:71,070,532 INFO 2026-05-28 22:54:45 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:24:50s. Time for last 1,000,000: 9s. Last read position: chr2:74,252,270 INFO 2026-05-28 22:54:55 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:25:00s. Time for last 1,000,000: 10s. Last read position: chr2:85,304,328 INFO 2026-05-28 22:55:02 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:25:07s. Time for last 1,000,000: 7s. Last read position: chr2:87,792,195 INFO 2026-05-28 22:55:11 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:25:17s. Time for last 1,000,000: 9s. Last read position: chr2:96,761,584 INFO 2026-05-28 22:55:19 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:25:25s. Time for last 1,000,000: 8s. Last read position: chr2:101,253,368 INFO 2026-05-28 22:55:34 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:25:40s. Time for last 1,000,000: 14s. Last read position: chr2:108,672,908 INFO 2026-05-28 22:55:39 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:25:44s. Time for last 1,000,000: 4s. Last read position: chr2:109,804,106 INFO 2026-05-28 22:55:46 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:25:52s. Time for last 1,000,000: 7s. Last read position: chr2:112,324,274 INFO 2026-05-28 22:55:51 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:25:57s. Time for last 1,000,000: 4s. Last read position: chr2:118,846,633 INFO 2026-05-28 22:56:04 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:26:09s. Time for last 1,000,000: 12s. Last read position: chr2:130,182,627 INFO 2026-05-28 22:56:12 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:26:17s. Time for last 1,000,000: 8s. Last read position: chr2:135,748,267 INFO 2026-05-28 22:56:26 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:26:31s. Time for last 1,000,000: 13s. Last read position: chr2:151,465,646 INFO 2026-05-28 22:56:36 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:26:41s. Time for last 1,000,000: 9s. Last read position: chr2:159,762,945 INFO 2026-05-28 22:56:48 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:26:53s. Time for last 1,000,000: 11s. Last read position: chr2:171,747,774 INFO 2026-05-28 22:56:56 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:27:02s. Time for last 1,000,000: 8s. Last read position: chr2:177,215,562 INFO 2026-05-28 22:57:22 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:27:27s. Time for last 1,000,000: 25s. Last read position: chr2:182,989,139 INFO 2026-05-28 22:57:31 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:27:36s. Time for last 1,000,000: 8s. Last read position: chr2:190,687,293 INFO 2026-05-28 22:57:48 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:27:54s. Time for last 1,000,000: 17s. Last read position: chr2:200,412,318 INFO 2026-05-28 22:58:11 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:28:16s. Time for last 1,000,000: 22s. Last read position: chr2:203,440,960 INFO 2026-05-28 22:58:23 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:28:29s. Time for last 1,000,000: 12s. Last read position: chr2:207,124,179 INFO 2026-05-28 22:58:43 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:28:48s. Time for last 1,000,000: 19s. Last read position: chr2:215,422,228 INFO 2026-05-28 22:58:55 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:29:00s. Time for last 1,000,000: 11s. Last read position: chr2:218,592,623 INFO 2026-05-28 22:59:05 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:29:10s. Time for last 1,000,000: 10s. Last read position: chr2:219,461,845 INFO 2026-05-28 22:59:17 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:29:23s. Time for last 1,000,000: 12s. Last read position: chr2:224,830,555 INFO 2026-05-28 22:59:38 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:29:43s. Time for last 1,000,000: 20s. Last read position: chr2:231,455,170 INFO 2026-05-28 22:59:52 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:29:58s. Time for last 1,000,000: 14s. Last read position: chr2:235,042,020 INFO 2026-05-28 23:00:04 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:30:09s. Time for last 1,000,000: 11s. Last read position: chr2:240,462,507 INFO 2026-05-28 23:00:22 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:30:28s. Time for last 1,000,000: 18s. Last read position: chr2:241,497,629 INFO 2026-05-28 23:00:37 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:30:42s. Time for last 1,000,000: 14s. Last read position: chr3:9,840,710 INFO 2026-05-28 23:00:48 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:30:54s. Time for last 1,000,000: 11s. Last read position: chr3:13,358,271 INFO 2026-05-28 23:00:56 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:31:02s. Time for last 1,000,000: 7s. Last read position: chr3:23,878,537 INFO 2026-05-28 23:01:07 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:31:13s. Time for last 1,000,000: 11s. Last read position: chr3:33,068,282 INFO 2026-05-28 23:01:22 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:31:27s. Time for last 1,000,000: 14s. Last read position: chr3:39,143,118 INFO 2026-05-28 23:01:49 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:31:55s. Time for last 1,000,000: 27s. Last read position: chr3:42,637,955 INFO 2026-05-28 23:01:59 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:32:05s. Time for last 1,000,000: 10s. Last read position: chr3:47,336,587 INFO 2026-05-28 23:02:11 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:32:16s. Time for last 1,000,000: 11s. Last read position: chr3:47,921,795 INFO 2026-05-28 23:02:24 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:32:29s. Time for last 1,000,000: 13s. Last read position: chr3:48,980,390 INFO 2026-05-28 23:02:40 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:32:45s. Time for last 1,000,000: 16s. Last read position: chr3:49,124,803 INFO 2026-05-28 23:02:48 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:32:54s. Time for last 1,000,000: 8s. Last read position: chr3:49,674,545 INFO 2026-05-28 23:03:01 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:33:07s. Time for last 1,000,000: 12s. Last read position: chr3:50,256,939 INFO 2026-05-28 23:03:08 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:33:14s. Time for last 1,000,000: 7s. Last read position: chr3:51,994,053 INFO 2026-05-28 23:03:20 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:33:25s. Time for last 1,000,000: 11s. Last read position: chr3:52,693,804 INFO 2026-05-28 23:03:30 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:33:36s. Time for last 1,000,000: 10s. Last read position: chr3:53,255,843 INFO 2026-05-28 23:03:46 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:33:52s. Time for last 1,000,000: 15s. Last read position: chr3:58,153,492 INFO 2026-05-28 23:04:02 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:34:08s. Time for last 1,000,000: 16s. Last read position: chr3:72,888,381 INFO 2026-05-28 23:04:10 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:34:15s. Time for last 1,000,000: 7s. Last read position: chr3:98,799,571 INFO 2026-05-28 23:04:31 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:34:36s. Time for last 1,000,000: 20s. Last read position: chr3:100,926,439 INFO 2026-05-28 23:04:40 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:34:45s. Time for last 1,000,000: 9s. Last read position: chr3:114,350,861 INFO 2026-05-28 23:04:48 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:34:53s. Time for last 1,000,000: 7s. Last read position: chr3:123,638,142 INFO 2026-05-28 23:04:58 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:35:04s. Time for last 1,000,000: 10s. Last read position: chr3:127,017,759 INFO 2026-05-28 23:05:06 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:35:12s. Time for last 1,000,000: 7s. Last read position: chr3:129,436,686 INFO 2026-05-28 23:05:19 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:35:24s. Time for last 1,000,000: 12s. Last read position: chr3:134,371,028 INFO 2026-05-28 23:05:32 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:35:38s. Time for last 1,000,000: 13s. Last read position: chr3:146,206,727 INFO 2026-05-28 23:05:40 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:35:45s. Time for last 1,000,000: 7s. Last read position: chr3:154,315,156 INFO 2026-05-28 23:05:50 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:35:56s. Time for last 1,000,000: 10s. Last read position: chr3:171,687,384 INFO 2026-05-28 23:06:13 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:36:18s. Time for last 1,000,000: 22s. Last read position: chr3:181,713,309 INFO 2026-05-28 23:06:24 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:36:30s. Time for last 1,000,000: 11s. Last read position: chr3:184,307,477 INFO 2026-05-28 23:06:53 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:36:59s. Time for last 1,000,000: 29s. Last read position: chr3:186,048,704 INFO 2026-05-28 23:07:04 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:37:09s. Time for last 1,000,000: 10s. Last read position: chr3:193,643,038 INFO 2026-05-28 23:07:18 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:37:24s. Time for last 1,000,000: 14s. Last read position: chr3:196,569,244 INFO 2026-05-28 23:07:54 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:37:59s. Time for last 1,000,000: 35s. Last read position: chr4:962,871 INFO 2026-05-28 23:08:02 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:38:08s. Time for last 1,000,000: 8s. Last read position: chr4:1,728,661 INFO 2026-05-28 23:08:18 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:38:23s. Time for last 1,000,000: 15s. Last read position: chr4:2,072,979 INFO 2026-05-28 23:08:40 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:38:45s. Time for last 1,000,000: 21s. Last read position: chr4:5,798,621 INFO 2026-05-28 23:08:47 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:38:53s. Time for last 1,000,000: 7s. Last read position: chr4:9,937,722 INFO 2026-05-28 23:08:58 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:39:03s. Time for last 1,000,000: 10s. Last read position: chr4:23,813,078 INFO 2026-05-28 23:09:07 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:39:13s. Time for last 1,000,000: 9s. Last read position: chr4:39,862,904 INFO 2026-05-28 23:09:25 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:39:31s. Time for last 1,000,000: 18s. Last read position: chr4:44,678,692 INFO 2026-05-28 23:09:36 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:39:41s. Time for last 1,000,000: 10s. Last read position: chr4:55,118,661 INFO 2026-05-28 23:09:44 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:39:49s. Time for last 1,000,000: 7s. Last read position: chr4:57,023,523 INFO 2026-05-28 23:09:48 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:39:53s. Time for last 1,000,000: 4s. Last read position: chr4:57,110,158 INFO 2026-05-28 23:09:56 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:40:01s. Time for last 1,000,000: 8s. Last read position: chr4:73,142,653 INFO 2026-05-28 23:10:12 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:40:18s. Time for last 1,000,000: 16s. Last read position: chr4:77,058,570 INFO 2026-05-28 23:10:28 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:40:33s. Time for last 1,000,000: 15s. Last read position: chr4:87,977,077 INFO 2026-05-28 23:10:37 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:40:42s. Time for last 1,000,000: 9s. Last read position: chr4:99,948,455 INFO 2026-05-28 23:11:13 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:41:19s. Time for last 1,000,000: 36s. Last read position: chr4:113,902,438 INFO 2026-05-28 23:11:26 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:41:32s. Time for last 1,000,000: 13s. Last read position: chr4:122,881,064 INFO 2026-05-28 23:11:33 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:41:38s. Time for last 1,000,000: 6s. Last read position: chr4:139,533,216 INFO 2026-05-28 23:11:46 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:41:52s. Time for last 1,000,000: 13s. Last read position: chr4:150,914,201 INFO 2026-05-28 23:12:24 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:42:30s. Time for last 1,000,000: 37s. Last read position: chr4:158,170,565 INFO 2026-05-28 23:12:35 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:42:41s. Time for last 1,000,000: 11s. Last read position: chr4:168,915,977 INFO 2026-05-28 23:12:44 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:42:49s. Time for last 1,000,000: 8s. Last read position: chr4:183,099,562 INFO 2026-05-28 23:12:55 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:43:00s. Time for last 1,000,000: 10s. Last read position: chr4:186,620,913 INFO 2026-05-28 23:13:03 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:43:09s. Time for last 1,000,000: 8s. Last read position: chr5:3,599,797 INFO 2026-05-28 23:13:12 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:43:18s. Time for last 1,000,000: 8s. Last read position: chr5:14,143,866 INFO 2026-05-28 23:13:36 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:43:41s. Time for last 1,000,000: 23s. Last read position: chr5:14,476,904 INFO 2026-05-28 23:14:00 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:44:06s. Time for last 1,000,000: 24s. Last read position: chr5:32,090,661 INFO 2026-05-28 23:14:15 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:44:20s. Time for last 1,000,000: 14s. Last read position: chr5:38,881,592 INFO 2026-05-28 23:14:25 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:44:30s. Time for last 1,000,000: 10s. Last read position: chr5:55,285,697 INFO 2026-05-28 23:14:36 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:44:41s. Time for last 1,000,000: 10s. Last read position: chr5:66,043,117 INFO 2026-05-28 23:14:45 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:44:50s. Time for last 1,000,000: 9s. Last read position: chr5:72,107,609 INFO 2026-05-28 23:14:49 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:44:54s. Time for last 1,000,000: 3s. Last read position: chr5:72,200,042 INFO 2026-05-28 23:14:59 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:45:05s. Time for last 1,000,000: 10s. Last read position: chr5:75,581,359 INFO 2026-05-28 23:15:07 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:45:13s. Time for last 1,000,000: 8s. Last read position: chr5:83,057,020 INFO 2026-05-28 23:15:17 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:45:22s. Time for last 1,000,000: 9s. Last read position: chr5:84,327,743 INFO 2026-05-28 23:15:34 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:45:40s. Time for last 1,000,000: 17s. Last read position: chr5:96,662,381 INFO 2026-05-28 23:16:37 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:46:42s. Time for last 1,000,000: 62s. Last read position: chr5:102,990,328 INFO 2026-05-28 23:16:46 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:46:51s. Time for last 1,000,000: 9s. Last read position: chr5:115,841,452 INFO 2026-05-28 23:17:00 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:47:06s. Time for last 1,000,000: 14s. Last read position: chr5:128,174,574 INFO 2026-05-28 23:17:11 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:47:17s. Time for last 1,000,000: 10s. Last read position: chr5:133,991,038 INFO 2026-05-28 23:17:19 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:47:25s. Time for last 1,000,000: 8s. Last read position: chr5:138,164,919 INFO 2026-05-28 23:17:31 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:47:36s. Time for last 1,000,000: 11s. Last read position: chr5:138,925,328 INFO 2026-05-28 23:17:44 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:47:49s. Time for last 1,000,000: 12s. Last read position: chr5:140,690,885 INFO 2026-05-28 23:17:47 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:47:52s. Time for last 1,000,000: 2s. Last read position: chr5:141,390,507 INFO 2026-05-28 23:17:56 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:48:01s. Time for last 1,000,000: 9s. Last read position: chr5:141,978,337 INFO 2026-05-28 23:18:10 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:48:16s. Time for last 1,000,000: 14s. Last read position: chr5:147,671,682 INFO 2026-05-28 23:18:20 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:48:26s. Time for last 1,000,000: 10s. Last read position: chr5:151,032,287 INFO 2026-05-28 23:18:33 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:48:38s. Time for last 1,000,000: 12s. Last read position: chr5:154,790,705 INFO 2026-05-28 23:18:42 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:48:48s. Time for last 1,000,000: 9s. Last read position: chr5:159,268,938 INFO 2026-05-28 23:18:50 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:48:56s. Time for last 1,000,000: 7s. Last read position: chr5:168,247,083 INFO 2026-05-28 23:19:07 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:49:12s. Time for last 1,000,000: 16s. Last read position: chr5:171,392,810 INFO 2026-05-28 23:19:21 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:49:26s. Time for last 1,000,000: 13s. Last read position: chr5:176,352,729 INFO 2026-05-28 23:19:29 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:49:34s. Time for last 1,000,000: 8s. Last read position: chr5:177,512,546 INFO 2026-05-28 23:19:53 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:49:58s. Time for last 1,000,000: 23s. Last read position: chr5:179,766,156 INFO 2026-05-28 23:20:01 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:50:07s. Time for last 1,000,000: 8s. Last read position: chr5:179,863,280 INFO 2026-05-28 23:20:11 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:50:16s. Time for last 1,000,000: 9s. Last read position: chr6:2,779,350 INFO 2026-05-28 23:20:18 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:50:24s. Time for last 1,000,000: 7s. Last read position: chr6:7,301,401 INFO 2026-05-28 23:20:24 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:50:30s. Time for last 1,000,000: 6s. Last read position: chr6:15,522,969 INFO 2026-05-28 23:20:33 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:50:38s. Time for last 1,000,000: 8s. Last read position: chr6:24,667,255 INFO 2026-05-28 23:20:36 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:50:41s. Time for last 1,000,000: 2s. Last read position: chr6:26,198,904 INFO 2026-05-28 23:20:38 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:50:43s. Time for last 1,000,000: 1s. Last read position: chr6:27,892,727 INFO 2026-05-28 23:20:44 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:50:49s. Time for last 1,000,000: 5s. Last read position: chr6:30,583,650 INFO 2026-05-28 23:20:55 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:51:01s. Time for last 1,000,000: 11s. Last read position: chr6:30,897,065 INFO 2026-05-28 23:21:06 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:51:11s. Time for last 1,000,000: 10s. Last read position: chr6:31,632,706 INFO 2026-05-28 23:21:22 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:51:27s. Time for last 1,000,000: 16s. Last read position: chr6:31,791,721 INFO 2026-05-28 23:21:30 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:51:35s. Time for last 1,000,000: 7s. Last read position: chr6:32,976,012 INFO 2026-05-28 23:21:39 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:51:45s. Time for last 1,000,000: 9s. Last read position: chr6:33,416,060 INFO 2026-05-28 23:21:47 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:51:52s. Time for last 1,000,000: 7s. Last read position: chr6:35,241,559 INFO 2026-05-28 23:21:53 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:51:58s. Time for last 1,000,000: 5s. Last read position: chr6:37,446,329 INFO 2026-05-28 23:21:59 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:52:05s. Time for last 1,000,000: 6s. Last read position: chr6:43,020,886 INFO 2026-05-28 23:22:12 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:52:17s. Time for last 1,000,000: 12s. Last read position: chr6:43,771,145 INFO 2026-05-28 23:22:19 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:52:25s. Time for last 1,000,000: 7s. Last read position: chr6:52,264,735 INFO 2026-05-28 23:22:34 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:52:39s. Time for last 1,000,000: 14s. Last read position: chr6:56,494,030 INFO 2026-05-28 23:24:05 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:54:11s. Time for last 1,000,000: 91s. Last read position: chr6:56,636,649 INFO 2026-05-28 23:24:37 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:54:42s. Time for last 1,000,000: 31s. Last read position: chr6:75,097,291 INFO 2026-05-28 23:24:55 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:55:01s. Time for last 1,000,000: 18s. Last read position: chr6:83,195,229 INFO 2026-05-28 23:25:03 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:55:08s. Time for last 1,000,000: 7s. Last read position: chr6:88,166,071 INFO 2026-05-28 23:25:12 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:55:17s. Time for last 1,000,000: 8s. Last read position: chr6:100,606,977 INFO 2026-05-28 23:25:18 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:55:23s. Time for last 1,000,000: 6s. Last read position: chr6:109,453,767 INFO 2026-05-28 23:25:31 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:55:37s. Time for last 1,000,000: 13s. Last read position: chr6:116,253,130 INFO 2026-05-28 23:25:38 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:55:43s. Time for last 1,000,000: 6s. Last read position: chr6:125,076,696 INFO 2026-05-28 23:25:54 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:55:59s. Time for last 1,000,000: 16s. Last read position: chr6:131,951,116 INFO 2026-05-28 23:26:07 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:56:12s. Time for last 1,000,000: 12s. Last read position: chr6:138,430,767 INFO 2026-05-28 23:26:16 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:56:22s. Time for last 1,000,000: 9s. Last read position: chr6:146,549,703 INFO 2026-05-28 23:26:23 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:56:28s. Time for last 1,000,000: 6s. Last read position: chr6:151,240,592 INFO 2026-05-28 23:26:56 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:57:01s. Time for last 1,000,000: 33s. Last read position: chr6:156,836,207 INFO 2026-05-28 23:27:07 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:57:12s. Time for last 1,000,000: 11s. Last read position: chr6:158,770,822 INFO 2026-05-28 23:27:15 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:57:20s. Time for last 1,000,000: 7s. Last read position: chr6:160,070,029 INFO 2026-05-28 23:27:28 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:57:33s. Time for last 1,000,000: 13s. Last read position: chr6:163,563,650 INFO 2026-05-28 23:27:44 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:57:49s. Time for last 1,000,000: 15s. Last read position: chr6:170,582,135 INFO 2026-05-28 23:27:53 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:57:58s. Time for last 1,000,000: 9s. Last read position: chr7:2,215,918 INFO 2026-05-28 23:28:00 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:58:05s. Time for last 1,000,000: 6s. Last read position: chr7:4,079,533 INFO 2026-05-28 23:28:08 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:58:14s. Time for last 1,000,000: 8s. Last read position: chr7:5,527,672 INFO 2026-05-28 23:28:17 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:58:22s. Time for last 1,000,000: 8s. Last read position: chr7:5,528,510 INFO 2026-05-28 23:28:28 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:58:34s. Time for last 1,000,000: 11s. Last read position: chr7:5,593,652 INFO 2026-05-28 23:28:34 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:58:40s. Time for last 1,000,000: 6s. Last read position: chr7:7,742,820 INFO 2026-05-28 23:28:45 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:58:51s. Time for last 1,000,000: 10s. Last read position: chr7:22,964,502 INFO 2026-05-28 23:29:07 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:59:13s. Time for last 1,000,000: 21s. Last read position: chr7:29,926,507 INFO 2026-05-28 23:29:22 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:59:28s. Time for last 1,000,000: 14s. Last read position: chr7:35,872,723 INFO 2026-05-28 23:29:31 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:59:36s. Time for last 1,000,000: 8s. Last read position: chr7:43,807,139 INFO 2026-05-28 23:29:40 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:59:46s. Time for last 1,000,000: 9s. Last read position: chr7:44,760,168 INFO 2026-05-28 23:29:50 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:59:55s. Time for last 1,000,000: 9s. Last read position: chr7:48,094,784 INFO 2026-05-28 23:30:03 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 01:00:08s. Time for last 1,000,000: 12s. Last read position: chr7:56,064,272 INFO 2026-05-28 23:30:13 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 01:00:18s. Time for last 1,000,000: 10s. Last read position: chr7:70,789,913 INFO 2026-05-28 23:30:19 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 01:00:24s. Time for last 1,000,000: 6s. Last read position: chr7:73,297,165 INFO 2026-05-28 23:30:26 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 01:00:31s. Time for last 1,000,000: 7s. Last read position: chr7:74,338,917 INFO 2026-05-28 23:30:32 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 01:00:37s. Time for last 1,000,000: 6s. Last read position: chr7:75,422,244 INFO 2026-05-28 23:30:38 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 01:00:44s. Time for last 1,000,000: 6s. Last read position: chr7:76,304,036 INFO 2026-05-28 23:30:45 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 01:00:50s. Time for last 1,000,000: 6s. Last read position: chr7:84,014,302 INFO 2026-05-28 23:31:45 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 01:01:50s. Time for last 1,000,000: 59s. Last read position: chr7:92,102,609 INFO 2026-05-28 23:32:17 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 01:02:23s. Time for last 1,000,000: 32s. Last read position: chr7:94,656,513 INFO 2026-05-28 23:32:25 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 01:02:31s. Time for last 1,000,000: 8s. Last read position: chr7:96,120,500 INFO 2026-05-28 23:32:48 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:02:53s. Time for last 1,000,000: 22s. Last read position: chr7:99,388,044 INFO 2026-05-28 23:32:57 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:03:02s. Time for last 1,000,000: 9s. Last read position: chr7:100,160,811 INFO 2026-05-28 23:33:06 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:03:11s. Time for last 1,000,000: 8s. Last read position: chr7:100,865,912 INFO 2026-05-28 23:33:17 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:03:23s. Time for last 1,000,000: 11s. Last read position: chr7:102,355,927 INFO 2026-05-28 23:33:21 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:03:26s. Time for last 1,000,000: 3s. Last read position: chr7:103,307,602 INFO 2026-05-28 23:33:42 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:03:48s. Time for last 1,000,000: 21s. Last read position: chr7:108,191,803 INFO 2026-05-28 23:33:55 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:04:01s. Time for last 1,000,000: 12s. Last read position: chr7:122,010,739 INFO 2026-05-28 23:34:11 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:04:16s. Time for last 1,000,000: 15s. Last read position: chr7:127,904,770 INFO 2026-05-28 23:34:20 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:04:26s. Time for last 1,000,000: 9s. Last read position: chr7:129,225,306 INFO 2026-05-28 23:34:29 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:04:34s. Time for last 1,000,000: 8s. Last read position: chr7:134,933,057 INFO 2026-05-28 23:34:39 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:04:44s. Time for last 1,000,000: 9s. Last read position: chr7:138,554,876 INFO 2026-05-28 23:34:44 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:04:49s. Time for last 1,000,000: 5s. Last read position: chr7:139,716,144 INFO 2026-05-28 23:34:58 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:05:03s. Time for last 1,000,000: 13s. Last read position: chr7:143,383,155 INFO 2026-05-28 23:35:05 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:05:11s. Time for last 1,000,000: 7s. Last read position: chr7:150,371,227 INFO 2026-05-28 23:35:16 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:05:21s. Time for last 1,000,000: 10s. Last read position: chr7:151,224,832 INFO 2026-05-28 23:35:38 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:05:44s. Time for last 1,000,000: 22s. Last read position: chr7:155,764,007 INFO 2026-05-28 23:35:48 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:05:54s. Time for last 1,000,000: 10s. Last read position: chr8:9,680,734 INFO 2026-05-28 23:36:10 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:06:15s. Time for last 1,000,000: 21s. Last read position: chr8:19,954,342 INFO 2026-05-28 23:36:21 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:06:27s. Time for last 1,000,000: 11s. Last read position: chr8:22,690,443 INFO 2026-05-28 23:36:28 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:06:34s. Time for last 1,000,000: 7s. Last read position: chr8:28,717,827 INFO 2026-05-28 23:36:39 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:06:44s. Time for last 1,000,000: 10s. Last read position: chr8:38,290,650 INFO 2026-05-28 23:37:03 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:07:08s. Time for last 1,000,000: 24s. Last read position: chr8:41,497,590 INFO 2026-05-28 23:37:18 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:07:23s. Time for last 1,000,000: 14s. Last read position: chr8:47,957,230 INFO 2026-05-28 23:37:29 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:07:35s. Time for last 1,000,000: 11s. Last read position: chr8:66,429,427 INFO 2026-05-28 23:37:39 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:07:44s. Time for last 1,000,000: 9s. Last read position: chr8:80,705,231 INFO 2026-05-28 23:37:47 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:07:52s. Time for last 1,000,000: 8s. Last read position: chr8:99,887,533 INFO 2026-05-28 23:38:03 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:08:08s. Time for last 1,000,000: 16s. Last read position: chr8:116,847,559 INFO 2026-05-28 23:38:11 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:08:16s. Time for last 1,000,000: 7s. Last read position: chr8:125,431,130 INFO 2026-05-28 23:38:25 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:08:31s. Time for last 1,000,000: 14s. Last read position: chr8:140,706,140 INFO 2026-05-28 23:38:43 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:08:48s. Time for last 1,000,000: 17s. Last read position: chr8:143,917,772 INFO 2026-05-28 23:38:57 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:09:03s. Time for last 1,000,000: 14s. Last read position: chr8:143,938,217 INFO 2026-05-28 23:39:10 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:09:15s. Time for last 1,000,000: 12s. Last read position: chr8:144,473,124 INFO 2026-05-28 23:39:24 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:09:30s. Time for last 1,000,000: 14s. Last read position: chr9:2,650,463 INFO 2026-05-28 23:39:38 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:09:43s. Time for last 1,000,000: 13s. Last read position: chr9:9,442,114 INFO 2026-05-28 23:40:01 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:10:06s. Time for last 1,000,000: 23s. Last read position: chr9:14,307,223 INFO 2026-05-28 23:40:11 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:10:16s. Time for last 1,000,000: 9s. Last read position: chr9:27,029,058 INFO 2026-05-28 23:40:16 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:10:21s. Time for last 1,000,000: 5s. Last read position: chr9:34,400,945 INFO 2026-05-28 23:40:30 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:10:35s. Time for last 1,000,000: 13s. Last read position: chr9:35,703,886 INFO 2026-05-28 23:40:38 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:10:43s. Time for last 1,000,000: 8s. Last read position: chr9:37,428,489 INFO 2026-05-28 23:40:42 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:10:47s. Time for last 1,000,000: 4s. Last read position: chr9:66,148,969 INFO 2026-05-28 23:40:49 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:10:55s. Time for last 1,000,000: 7s. Last read position: chr9:77,221,271 INFO 2026-05-28 23:41:02 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:11:07s. Time for last 1,000,000: 12s. Last read position: chr9:92,240,946 INFO 2026-05-28 23:41:10 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:11:16s. Time for last 1,000,000: 8s. Last read position: chr9:96,937,058 INFO 2026-05-28 23:41:17 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:11:22s. Time for last 1,000,000: 6s. Last read position: chr9:106,928,755 INFO 2026-05-28 23:41:33 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:11:38s. Time for last 1,000,000: 15s. Last read position: chr9:113,565,487 INFO 2026-05-28 23:41:51 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:11:57s. Time for last 1,000,000: 18s. Last read position: chr9:115,086,657 INFO 2026-05-28 23:42:05 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:12:10s. Time for last 1,000,000: 13s. Last read position: chr9:122,858,753 INFO 2026-05-28 23:42:15 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:12:20s. Time for last 1,000,000: 10s. Last read position: chr9:127,444,937 INFO 2026-05-28 23:42:30 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:12:36s. Time for last 1,000,000: 15s. Last read position: chr9:128,257,471 INFO 2026-05-28 23:42:45 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:12:51s. Time for last 1,000,000: 15s. Last read position: chr9:128,908,919 INFO 2026-05-28 23:42:55 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:13:00s. Time for last 1,000,000: 9s. Last read position: chr9:130,835,484 INFO 2026-05-28 23:43:04 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:13:10s. Time for last 1,000,000: 9s. Last read position: chr9:131,522,046 INFO 2026-05-28 23:43:13 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:13:18s. Time for last 1,000,000: 8s. Last read position: chr9:133,778,852 INFO 2026-05-28 23:43:24 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:13:29s. Time for last 1,000,000: 11s. Last read position: chr9:135,821,560 INFO 2026-05-28 23:43:38 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:13:43s. Time for last 1,000,000: 13s. Last read position: chr9:136,523,792 INFO 2026-05-28 23:43:50 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:13:56s. Time for last 1,000,000: 12s. Last read position: chr9:137,187,536 INFO 2026-05-28 23:43:59 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:14:05s. Time for last 1,000,000: 8s. Last read position: chr10:1,042,653 INFO 2026-05-28 23:44:14 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:14:19s. Time for last 1,000,000: 14s. Last read position: chr10:15,213,343 INFO 2026-05-28 23:44:25 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:14:31s. Time for last 1,000,000: 11s. Last read position: chr10:28,590,756 INFO 2026-05-28 23:44:40 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:14:45s. Time for last 1,000,000: 14s. Last read position: chr10:42,488,042 INFO 2026-05-28 23:44:46 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:14:51s. Time for last 1,000,000: 5s. Last read position: chr10:50,311,374 INFO 2026-05-28 23:44:51 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:14:57s. Time for last 1,000,000: 5s. Last read position: chr10:67,990,982 INFO 2026-05-28 23:45:02 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:15:07s. Time for last 1,000,000: 10s. Last read position: chr10:72,274,349 INFO 2026-05-28 23:45:13 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:15:18s. Time for last 1,000,000: 11s. Last read position: chr10:75,028,777 INFO 2026-05-28 23:45:27 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:15:32s. Time for last 1,000,000: 14s. Last read position: chr10:84,372,123 INFO 2026-05-28 23:45:32 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:15:38s. Time for last 1,000,000: 5s. Last read position: chr10:92,463,778 INFO 2026-05-28 23:45:48 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:15:54s. Time for last 1,000,000: 16s. Last read position: chr10:96,837,643 INFO 2026-05-28 23:45:56 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:16:02s. Time for last 1,000,000: 7s. Last read position: chr10:100,360,767 INFO 2026-05-28 23:46:20 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:16:26s. Time for last 1,000,000: 24s. Last read position: chr10:102,421,973 INFO 2026-05-28 23:46:30 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:16:35s. Time for last 1,000,000: 9s. Last read position: chr10:112,440,556 INFO 2026-05-28 23:46:39 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:16:44s. Time for last 1,000,000: 8s. Last read position: chr10:119,726,318 INFO 2026-05-28 23:46:48 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:16:53s. Time for last 1,000,000: 8s. Last read position: chr10:128,103,475 INFO 2026-05-28 23:46:53 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:16:58s. Time for last 1,000,000: 5s. Last read position: chr11:236,999 INFO 2026-05-28 23:47:02 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:17:08s. Time for last 1,000,000: 9s. Last read position: chr11:862,703 INFO 2026-05-28 23:47:13 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:17:19s. Time for last 1,000,000: 11s. Last read position: chr11:3,359,335 INFO 2026-05-28 23:47:27 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:17:33s. Time for last 1,000,000: 13s. Last read position: chr11:8,964,234 INFO 2026-05-28 23:47:44 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:17:50s. Time for last 1,000,000: 16s. Last read position: chr11:12,882,998 INFO 2026-05-28 23:47:56 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:18:02s. Time for last 1,000,000: 11s. Last read position: chr11:27,658,498 INFO 2026-05-28 23:48:06 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:18:11s. Time for last 1,000,000: 9s. Last read position: chr11:35,139,247 INFO 2026-05-28 23:48:19 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:18:25s. Time for last 1,000,000: 13s. Last read position: chr11:45,904,019 INFO 2026-05-28 23:48:36 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:18:42s. Time for last 1,000,000: 16s. Last read position: chr11:47,414,840 INFO 2026-05-28 23:48:44 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:18:49s. Time for last 1,000,000: 7s. Last read position: chr11:57,334,528 INFO 2026-05-28 23:48:59 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:19:04s. Time for last 1,000,000: 14s. Last read position: chr11:61,281,071 INFO 2026-05-28 23:49:15 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:19:21s. Time for last 1,000,000: 16s. Last read position: chr11:62,146,861 INFO 2026-05-28 23:49:21 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:19:27s. Time for last 1,000,000: 5s. Last read position: chr11:62,632,580 INFO 2026-05-28 23:49:34 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:19:40s. Time for last 1,000,000: 13s. Last read position: chr11:63,998,958 INFO 2026-05-28 23:49:43 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:19:49s. Time for last 1,000,000: 8s. Last read position: chr11:64,878,359 INFO 2026-05-28 23:49:50 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:19:56s. Time for last 1,000,000: 6s. Last read position: chr11:65,503,402 INFO 2026-05-28 23:50:03 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:20:09s. Time for last 1,000,000: 12s. Last read position: chr11:65,661,990 INFO 2026-05-28 23:50:12 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:20:17s. Time for last 1,000,000: 8s. Last read position: chr11:66,543,784 INFO 2026-05-28 23:50:24 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:20:29s. Time for last 1,000,000: 11s. Last read position: chr11:67,500,351 INFO 2026-05-28 23:50:33 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:20:38s. Time for last 1,000,000: 9s. Last read position: chr11:69,651,141 INFO 2026-05-28 23:50:49 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:20:55s. Time for last 1,000,000: 16s. Last read position: chr11:73,363,364 INFO 2026-05-28 23:51:03 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:21:08s. Time for last 1,000,000: 13s. Last read position: chr11:78,889,818 INFO 2026-05-28 23:51:16 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:21:21s. Time for last 1,000,000: 13s. Last read position: chr11:95,979,738 INFO 2026-05-28 23:51:26 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:21:31s. Time for last 1,000,000: 10s. Last read position: chr11:108,514,290 INFO 2026-05-28 23:51:37 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:21:43s. Time for last 1,000,000: 11s. Last read position: chr11:117,206,235 INFO 2026-05-28 23:51:50 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:21:56s. Time for last 1,000,000: 12s. Last read position: chr11:118,899,062 INFO 2026-05-28 23:51:59 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:22:04s. Time for last 1,000,000: 8s. Last read position: chr11:120,431,829 INFO 2026-05-28 23:52:11 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:22:17s. Time for last 1,000,000: 12s. Last read position: chr11:126,267,233 INFO 2026-05-28 23:52:22 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:22:28s. Time for last 1,000,000: 10s. Last read position: chr12:548,022 INFO 2026-05-28 23:52:36 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:22:41s. Time for last 1,000,000: 13s. Last read position: chr12:6,385,376 INFO 2026-05-28 23:53:10 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:23:16s. Time for last 1,000,000: 34s. Last read position: chr12:6,852,182 INFO 2026-05-28 23:53:17 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:23:22s. Time for last 1,000,000: 6s. Last read position: chr12:10,702,022 INFO 2026-05-28 23:53:25 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:23:30s. Time for last 1,000,000: 8s. Last read position: chr12:21,638,411 INFO 2026-05-28 23:53:36 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:23:41s. Time for last 1,000,000: 10s. Last read position: chr12:31,985,621 INFO 2026-05-28 23:53:47 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:23:53s. Time for last 1,000,000: 11s. Last read position: chr12:46,370,844 INFO 2026-05-28 23:53:59 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:24:05s. Time for last 1,000,000: 12s. Last read position: chr12:49,052,172 INFO 2026-05-28 23:54:06 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:24:11s. Time for last 1,000,000: 6s. Last read position: chr12:49,646,992 INFO 2026-05-28 23:54:17 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:24:23s. Time for last 1,000,000: 11s. Last read position: chr12:53,074,712 INFO 2026-05-28 23:54:33 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:24:39s. Time for last 1,000,000: 15s. Last read position: chr12:54,284,613 INFO 2026-05-28 23:54:44 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:24:50s. Time for last 1,000,000: 11s. Last read position: chr12:56,163,747 INFO 2026-05-28 23:54:57 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:25:02s. Time for last 1,000,000: 12s. Last read position: chr12:56,718,097 INFO 2026-05-28 23:55:12 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:25:17s. Time for last 1,000,000: 15s. Last read position: chr12:57,756,977 INFO 2026-05-28 23:55:23 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:25:28s. Time for last 1,000,000: 10s. Last read position: chr12:69,262,444 INFO 2026-05-28 23:55:35 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:25:40s. Time for last 1,000,000: 12s. Last read position: chr12:77,050,672 INFO 2026-05-28 23:55:46 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:25:51s. Time for last 1,000,000: 10s. Last read position: chr12:98,534,177 INFO 2026-05-28 23:56:02 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:26:08s. Time for last 1,000,000: 16s. Last read position: chr12:104,348,458 INFO 2026-05-28 23:56:12 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:26:17s. Time for last 1,000,000: 9s. Last read position: chr12:110,436,565 INFO 2026-05-28 23:56:27 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:26:33s. Time for last 1,000,000: 15s. Last read position: chr12:113,386,937 INFO 2026-05-28 23:56:43 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:26:49s. Time for last 1,000,000: 15s. Last read position: chr12:120,198,873 INFO 2026-05-28 23:56:53 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:26:58s. Time for last 1,000,000: 9s. Last read position: chr12:122,326,884 INFO 2026-05-28 23:57:04 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:27:09s. Time for last 1,000,000: 11s. Last read position: chr12:124,335,493 INFO 2026-05-28 23:57:25 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:27:30s. Time for last 1,000,000: 20s. Last read position: chr12:130,875,665 INFO 2026-05-28 23:57:34 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:27:40s. Time for last 1,000,000: 9s. Last read position: chr12:132,808,533 INFO 2026-05-28 23:57:41 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:27:46s. Time for last 1,000,000: 6s. Last read position: chr13:24,223,511 INFO 2026-05-28 23:57:49 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:27:54s. Time for last 1,000,000: 7s. Last read position: chr13:35,196,111 INFO 2026-05-28 23:57:57 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:28:02s. Time for last 1,000,000: 8s. Last read position: chr13:46,143,350 INFO 2026-05-28 23:58:05 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:28:11s. Time for last 1,000,000: 8s. Last read position: chr13:60,528,941 INFO 2026-05-28 23:58:15 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:28:21s. Time for last 1,000,000: 9s. Last read position: chr13:94,306,028 INFO 2026-05-28 23:58:29 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:28:35s. Time for last 1,000,000: 13s. Last read position: chr13:106,544,002 INFO 2026-05-28 23:58:39 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:28:45s. Time for last 1,000,000: 9s. Last read position: chr13:113,196,212 INFO 2026-05-28 23:58:50 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:28:55s. Time for last 1,000,000: 10s. Last read position: chr14:21,357,260 INFO 2026-05-28 23:59:02 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:29:07s. Time for last 1,000,000: 12s. Last read position: chr14:24,071,581 INFO 2026-05-28 23:59:18 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:29:23s. Time for last 1,000,000: 16s. Last read position: chr14:31,343,951 INFO 2026-05-28 23:59:27 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:29:33s. Time for last 1,000,000: 9s. Last read position: chr14:49,586,595 INFO 2026-05-28 23:59:30 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:29:35s. Time for last 1,000,000: 2s. Last read position: chr14:49,862,565 INFO 2026-05-28 23:59:34 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:29:40s. Time for last 1,000,000: 4s. Last read position: chr14:51,999,783 INFO 2026-05-28 23:59:49 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:29:55s. Time for last 1,000,000: 14s. Last read position: chr14:59,483,775 INFO 2026-05-29 00:00:25 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:30:30s. Time for last 1,000,000: 35s. Last read position: chr14:64,223,350 INFO 2026-05-29 00:00:42 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:30:48s. Time for last 1,000,000: 17s. Last read position: chr14:69,398,237 INFO 2026-05-29 00:00:53 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:30:58s. Time for last 1,000,000: 10s. Last read position: chr14:75,005,927 INFO 2026-05-29 00:01:01 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:31:06s. Time for last 1,000,000: 7s. Last read position: chr14:89,712,585 INFO 2026-05-29 00:01:12 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:31:17s. Time for last 1,000,000: 11s. Last read position: chr14:99,936,268 INFO 2026-05-29 00:03:37 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:33:43s. Time for last 1,000,000: 145s. Last read position: chr14:102,083,073 INFO 2026-05-29 00:03:53 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:33:58s. Time for last 1,000,000: 15s. Last read position: chr14:103,687,155 INFO 2026-05-29 00:04:10 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:34:16s. Time for last 1,000,000: 17s. Last read position: chr14:104,953,948 INFO 2026-05-29 00:04:22 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:34:28s. Time for last 1,000,000: 12s. Last read position: chr15:25,339,104 INFO 2026-05-29 00:04:53 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:34:58s. Time for last 1,000,000: 30s. Last read position: chr15:34,038,839 INFO 2026-05-29 00:04:59 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:35:05s. Time for last 1,000,000: 6s. Last read position: chr15:39,593,105 INFO 2026-05-29 00:05:08 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:35:13s. Time for last 1,000,000: 8s. Last read position: chr15:41,527,012 INFO 2026-05-29 00:05:19 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:35:24s. Time for last 1,000,000: 10s. Last read position: chr15:43,133,738 INFO 2026-05-29 00:05:27 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:35:32s. Time for last 1,000,000: 8s. Last read position: chr15:43,883,702 INFO 2026-05-29 00:05:38 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:35:43s. Time for last 1,000,000: 11s. Last read position: chr15:50,439,048 INFO 2026-05-29 00:05:50 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:35:55s. Time for last 1,000,000: 12s. Last read position: chr15:56,094,989 INFO 2026-05-29 00:06:09 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:36:15s. Time for last 1,000,000: 19s. Last read position: chr15:59,031,272 INFO 2026-05-29 00:06:35 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:36:41s. Time for last 1,000,000: 26s. Last read position: chr15:62,755,606 INFO 2026-05-29 00:06:45 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:36:50s. Time for last 1,000,000: 9s. Last read position: chr15:65,466,678 INFO 2026-05-29 00:06:55 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:37:01s. Time for last 1,000,000: 10s. Last read position: chr15:69,446,339 INFO 2026-05-29 00:07:09 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:37:14s. Time for last 1,000,000: 13s. Last read position: chr15:72,218,973 INFO 2026-05-29 00:07:22 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:37:27s. Time for last 1,000,000: 13s. Last read position: chr15:74,046,536 INFO 2026-05-29 00:07:34 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:37:40s. Time for last 1,000,000: 12s. Last read position: chr15:76,766,980 INFO 2026-05-29 00:07:46 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:37:51s. Time for last 1,000,000: 11s. Last read position: chr15:80,979,394 INFO 2026-05-29 00:07:51 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:37:56s. Time for last 1,000,000: 5s. Last read position: chr15:85,533,744 INFO 2026-05-29 00:08:07 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:38:12s. Time for last 1,000,000: 16s. Last read position: chr15:90,228,099 INFO 2026-05-29 00:08:20 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:38:25s. Time for last 1,000,000: 12s. Last read position: chr15:91,916,208 INFO 2026-05-29 00:08:29 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:38:34s. Time for last 1,000,000: 9s. Last read position: chr15:101,973,527 INFO 2026-05-29 00:08:40 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:38:45s. Time for last 1,000,000: 10s. Last read position: chr16:715,735 INFO 2026-05-29 00:08:50 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:38:55s. Time for last 1,000,000: 9s. Last read position: chr16:1,980,551 INFO 2026-05-29 00:09:27 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:39:32s. Time for last 1,000,000: 37s. Last read position: chr16:2,153,107 INFO 2026-05-29 00:09:37 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:39:42s. Time for last 1,000,000: 10s. Last read position: chr16:2,766,305 INFO 2026-05-29 00:09:47 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:39:52s. Time for last 1,000,000: 9s. Last read position: chr16:3,758,009 INFO 2026-05-29 00:09:58 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:40:03s. Time for last 1,000,000: 11s. Last read position: chr16:11,870,905 INFO 2026-05-29 00:10:05 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:40:11s. Time for last 1,000,000: 7s. Last read position: chr16:15,026,645 INFO 2026-05-29 00:10:17 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:40:22s. Time for last 1,000,000: 11s. Last read position: chr16:16,328,151 INFO 2026-05-29 00:10:19 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:40:25s. Time for last 1,000,000: 2s. Last read position: chr16:18,500,999 INFO 2026-05-29 00:10:28 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:40:34s. Time for last 1,000,000: 8s. Last read position: chr16:21,415,016 INFO 2026-05-29 00:10:33 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:40:38s. Time for last 1,000,000: 4s. Last read position: chr16:22,533,758 INFO 2026-05-29 00:10:41 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:40:46s. Time for last 1,000,000: 7s. Last read position: chr16:28,156,331 INFO 2026-05-29 00:10:52 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:40:57s. Time for last 1,000,000: 10s. Last read position: chr16:29,483,760 INFO 2026-05-29 00:10:58 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:41:04s. Time for last 1,000,000: 6s. Last read position: chr16:30,068,665 INFO 2026-05-29 00:11:06 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:41:11s. Time for last 1,000,000: 7s. Last read position: chr16:30,707,349 INFO 2026-05-29 00:11:13 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:41:19s. Time for last 1,000,000: 7s. Last read position: chr16:31,185,170 INFO 2026-05-29 00:11:22 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:41:27s. Time for last 1,000,000: 8s. Last read position: chr16:47,313,770 INFO 2026-05-29 00:11:31 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:41:36s. Time for last 1,000,000: 8s. Last read position: chr16:51,140,968 INFO 2026-05-29 00:11:45 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:41:51s. Time for last 1,000,000: 14s. Last read position: chr16:55,485,696 INFO 2026-05-29 00:11:55 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:42:00s. Time for last 1,000,000: 9s. Last read position: chr16:57,441,146 INFO 2026-05-29 00:12:16 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:42:21s. Time for last 1,000,000: 20s. Last read position: chr16:58,551,801 INFO 2026-05-29 00:12:27 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:42:33s. Time for last 1,000,000: 11s. Last read position: chr16:67,164,832 INFO 2026-05-29 00:12:39 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:42:45s. Time for last 1,000,000: 12s. Last read position: chr16:67,880,183 INFO 2026-05-29 00:12:50 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:42:56s. Time for last 1,000,000: 10s. Last read position: chr16:69,318,854 INFO 2026-05-29 00:13:03 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:43:09s. Time for last 1,000,000: 13s. Last read position: chr16:70,268,327 INFO 2026-05-29 00:13:16 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:43:21s. Time for last 1,000,000: 12s. Last read position: chr16:71,745,543 INFO 2026-05-29 00:13:26 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:43:32s. Time for last 1,000,000: 10s. Last read position: chr16:75,568,083 INFO 2026-05-29 00:13:34 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:43:40s. Time for last 1,000,000: 7s. Last read position: chr16:85,801,210 INFO 2026-05-29 00:13:42 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:43:48s. Time for last 1,000,000: 8s. Last read position: chr16:89,281,328 INFO 2026-05-29 00:14:06 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:44:12s. Time for last 1,000,000: 24s. Last read position: chr17:740,576 INFO 2026-05-29 00:14:13 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:44:19s. Time for last 1,000,000: 7s. Last read position: chr17:1,468,045 INFO 2026-05-29 00:14:28 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:44:33s. Time for last 1,000,000: 14s. Last read position: chr17:2,299,792 INFO 2026-05-29 00:14:39 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:44:44s. Time for last 1,000,000: 10s. Last read position: chr17:4,672,477 INFO 2026-05-29 00:14:49 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:44:54s. Time for last 1,000,000: 9s. Last read position: chr17:5,408,733 INFO 2026-05-29 00:14:59 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:45:04s. Time for last 1,000,000: 10s. Last read position: chr17:7,312,308 INFO 2026-05-29 00:15:08 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:45:13s. Time for last 1,000,000: 8s. Last read position: chr17:7,578,339 INFO 2026-05-29 00:15:21 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:45:27s. Time for last 1,000,000: 13s. Last read position: chr17:8,264,895 INFO 2026-05-29 00:15:30 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:45:35s. Time for last 1,000,000: 8s. Last read position: chr17:15,239,469 INFO 2026-05-29 00:15:43 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:45:49s. Time for last 1,000,000: 13s. Last read position: chr17:17,042,884 INFO 2026-05-29 00:15:55 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:46:01s. Time for last 1,000,000: 12s. Last read position: chr17:17,882,758 INFO 2026-05-29 00:16:06 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:46:11s. Time for last 1,000,000: 10s. Last read position: chr17:19,283,251 INFO 2026-05-29 00:16:30 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:46:36s. Time for last 1,000,000: 24s. Last read position: chr17:27,299,019 INFO 2026-05-29 00:16:42 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:46:47s. Time for last 1,000,000: 11s. Last read position: chr17:28,693,815 INFO 2026-05-29 00:16:53 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:46:59s. Time for last 1,000,000: 11s. Last read position: chr17:29,569,041 INFO 2026-05-29 00:17:05 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:47:10s. Time for last 1,000,000: 11s. Last read position: chr17:32,052,856 INFO 2026-05-29 00:17:17 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:47:23s. Time for last 1,000,000: 12s. Last read position: chr17:35,838,449 INFO 2026-05-29 00:17:32 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:47:37s. Time for last 1,000,000: 14s. Last read position: chr17:38,012,459 INFO 2026-05-29 00:17:37 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:47:42s. Time for last 1,000,000: 4s. Last read position: chr17:39,408,659 INFO 2026-05-29 00:17:49 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:47:54s. Time for last 1,000,000: 12s. Last read position: chr17:40,352,449 INFO 2026-05-29 00:17:58 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:48:03s. Time for last 1,000,000: 8s. Last read position: chr17:41,973,826 INFO 2026-05-29 00:18:18 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:48:23s. Time for last 1,000,000: 19s. Last read position: chr17:42,668,261 INFO 2026-05-29 00:18:30 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:48:35s. Time for last 1,000,000: 12s. Last read position: chr17:44,091,712 INFO 2026-05-29 00:18:42 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:48:48s. Time for last 1,000,000: 12s. Last read position: chr17:44,913,332 INFO 2026-05-29 00:18:53 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:48:58s. Time for last 1,000,000: 10s. Last read position: chr17:45,608,775 INFO 2026-05-29 00:19:07 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:49:13s. Time for last 1,000,000: 14s. Last read position: chr17:47,827,136 INFO 2026-05-29 00:19:17 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:49:22s. Time for last 1,000,000: 9s. Last read position: chr17:50,068,200 INFO 2026-05-29 00:19:28 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:49:33s. Time for last 1,000,000: 11s. Last read position: chr17:50,382,905 INFO 2026-05-29 00:19:41 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:49:46s. Time for last 1,000,000: 12s. Last read position: chr17:51,168,300 INFO 2026-05-29 00:19:50 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:49:56s. Time for last 1,000,000: 9s. Last read position: chr17:58,514,317 INFO 2026-05-29 00:19:59 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:50:05s. Time for last 1,000,000: 8s. Last read position: chr17:59,666,898 INFO 2026-05-29 00:20:17 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:50:23s. Time for last 1,000,000: 18s. Last read position: chr17:59,697,602 INFO 2026-05-29 00:20:26 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:50:31s. Time for last 1,000,000: 8s. Last read position: chr17:63,583,529 INFO 2026-05-29 00:20:40 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:50:46s. Time for last 1,000,000: 14s. Last read position: chr17:67,109,496 INFO 2026-05-29 00:20:55 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:51:00s. Time for last 1,000,000: 14s. Last read position: chr17:72,122,908 INFO 2026-05-29 00:21:06 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:51:12s. Time for last 1,000,000: 11s. Last read position: chr17:75,489,284 INFO 2026-05-29 00:21:28 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:51:34s. Time for last 1,000,000: 22s. Last read position: chr17:75,765,002 INFO 2026-05-29 00:21:36 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:51:42s. Time for last 1,000,000: 7s. Last read position: chr17:76,732,980 INFO 2026-05-29 00:21:49 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:51:54s. Time for last 1,000,000: 12s. Last read position: chr17:78,971,538 INFO 2026-05-29 00:22:01 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:52:06s. Time for last 1,000,000: 12s. Last read position: chr17:80,754,060 INFO 2026-05-29 00:22:13 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:52:18s. Time for last 1,000,000: 11s. Last read position: chr17:81,610,212 INFO 2026-05-29 00:22:42 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:52:47s. Time for last 1,000,000: 29s. Last read position: chr17:81,906,463 INFO 2026-05-29 00:22:53 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:52:59s. Time for last 1,000,000: 11s. Last read position: chr17:82,089,163 INFO 2026-05-29 00:23:08 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:53:13s. Time for last 1,000,000: 14s. Last read position: chr18:192,809 INFO 2026-05-29 00:23:18 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:53:24s. Time for last 1,000,000: 10s. Last read position: chr18:8,783,700 INFO 2026-05-29 00:23:27 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:53:33s. Time for last 1,000,000: 9s. Last read position: chr18:12,986,863 INFO 2026-05-29 00:23:39 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:53:45s. Time for last 1,000,000: 11s. Last read position: chr18:39,572,990 INFO 2026-05-29 00:23:53 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:53:59s. Time for last 1,000,000: 14s. Last read position: chr18:58,580,334 INFO 2026-05-29 00:24:02 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:54:08s. Time for last 1,000,000: 8s. Last read position: chr19:572,629 INFO 2026-05-29 00:24:14 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:54:20s. Time for last 1,000,000: 11s. Last read position: chr19:1,014,252 INFO 2026-05-29 00:24:24 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:54:30s. Time for last 1,000,000: 10s. Last read position: chr19:1,271,026 INFO 2026-05-29 00:24:33 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:54:38s. Time for last 1,000,000: 8s. Last read position: chr19:1,619,170 INFO 2026-05-29 00:24:42 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:54:47s. Time for last 1,000,000: 9s. Last read position: chr19:2,226,666 INFO 2026-05-29 00:24:48 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:54:54s. Time for last 1,000,000: 6s. Last read position: chr19:3,118,949 INFO 2026-05-29 00:24:56 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:55:01s. Time for last 1,000,000: 7s. Last read position: chr19:4,028,959 INFO 2026-05-29 00:25:02 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:55:07s. Time for last 1,000,000: 5s. Last read position: chr19:4,555,544 INFO 2026-05-29 00:25:13 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:55:19s. Time for last 1,000,000: 11s. Last read position: chr19:5,245,975 INFO 2026-05-29 00:25:22 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:55:28s. Time for last 1,000,000: 8s. Last read position: chr19:5,914,676 INFO 2026-05-29 00:25:29 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:55:35s. Time for last 1,000,000: 7s. Last read position: chr19:6,586,223 INFO 2026-05-29 00:25:40 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:55:46s. Time for last 1,000,000: 11s. Last read position: chr19:7,682,730 INFO 2026-05-29 00:25:47 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:55:53s. Time for last 1,000,000: 7s. Last read position: chr19:9,848,037 INFO 2026-05-29 00:26:15 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:56:20s. Time for last 1,000,000: 27s. Last read position: chr19:10,636,506 INFO 2026-05-29 00:26:43 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:56:49s. Time for last 1,000,000: 28s. Last read position: chr19:11,364,184 INFO 2026-05-29 00:26:54 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:56:59s. Time for last 1,000,000: 10s. Last read position: chr19:12,800,188 INFO 2026-05-29 00:27:03 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:57:09s. Time for last 1,000,000: 9s. Last read position: chr19:13,153,298 INFO 2026-05-29 00:27:11 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:57:16s. Time for last 1,000,000: 7s. Last read position: chr19:14,163,171 INFO 2026-05-29 00:27:22 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:57:27s. Time for last 1,000,000: 10s. Last read position: chr19:15,110,268 INFO 2026-05-29 00:27:32 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:57:38s. Time for last 1,000,000: 10s. Last read position: chr19:15,403,631 INFO 2026-05-29 00:27:44 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:57:50s. Time for last 1,000,000: 11s. Last read position: chr19:17,194,918 INFO 2026-05-29 00:27:53 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:57:59s. Time for last 1,000,000: 9s. Last read position: chr19:18,143,771 INFO 2026-05-29 00:28:00 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:58:05s. Time for last 1,000,000: 6s. Last read position: chr19:18,771,463 INFO 2026-05-29 00:28:09 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:58:15s. Time for last 1,000,000: 9s. Last read position: chr19:19,535,128 INFO 2026-05-29 00:28:15 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:58:21s. Time for last 1,000,000: 5s. Last read position: chr19:32,709,289 INFO 2026-05-29 00:28:27 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:58:33s. Time for last 1,000,000: 12s. Last read position: chr19:34,426,005 INFO 2026-05-29 00:28:36 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:58:41s. Time for last 1,000,000: 8s. Last read position: chr19:35,720,233 INFO 2026-05-29 00:28:54 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:59:00s. Time for last 1,000,000: 18s. Last read position: chr19:36,125,694 INFO 2026-05-29 00:29:02 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:59:08s. Time for last 1,000,000: 8s. Last read position: chr19:38,624,155 INFO 2026-05-29 00:29:13 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:59:18s. Time for last 1,000,000: 10s. Last read position: chr19:38,815,646 INFO 2026-05-29 00:29:22 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:59:27s. Time for last 1,000,000: 9s. Last read position: chr19:39,433,271 INFO 2026-05-29 00:29:35 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:59:40s. Time for last 1,000,000: 13s. Last read position: chr19:40,242,051 INFO 2026-05-29 00:29:54 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 02:00:00s. Time for last 1,000,000: 19s. Last read position: chr19:40,801,052 INFO 2026-05-29 00:30:05 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 02:00:10s. Time for last 1,000,000: 10s. Last read position: chr19:41,869,163 INFO 2026-05-29 00:30:13 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 02:00:19s. Time for last 1,000,000: 8s. Last read position: chr19:42,274,010 INFO 2026-05-29 00:30:22 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 02:00:27s. Time for last 1,000,000: 8s. Last read position: chr19:42,293,016 INFO 2026-05-29 00:30:35 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 02:00:40s. Time for last 1,000,000: 13s. Last read position: chr19:43,507,995 INFO 2026-05-29 00:30:40 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 02:00:46s. Time for last 1,000,000: 5s. Last read position: chr19:44,813,493 INFO 2026-05-29 00:30:49 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 02:00:54s. Time for last 1,000,000: 8s. Last read position: chr19:45,364,497 INFO 2026-05-29 00:30:57 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 02:01:03s. Time for last 1,000,000: 8s. Last read position: chr19:45,785,690 INFO 2026-05-29 00:31:05 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 02:01:11s. Time for last 1,000,000: 8s. Last read position: chr19:46,720,596 INFO 2026-05-29 00:31:13 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 02:01:19s. Time for last 1,000,000: 7s. Last read position: chr19:47,275,056 INFO 2026-05-29 00:31:22 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 02:01:27s. Time for last 1,000,000: 8s. Last read position: chr19:48,633,567 INFO 2026-05-29 00:31:29 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 02:01:35s. Time for last 1,000,000: 7s. Last read position: chr19:49,359,434 INFO 2026-05-29 00:31:36 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 02:01:41s. Time for last 1,000,000: 6s. Last read position: chr19:49,653,135 INFO 2026-05-29 00:31:49 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 02:01:54s. Time for last 1,000,000: 12s. Last read position: chr19:49,872,961 INFO 2026-05-29 00:31:59 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 02:02:04s. Time for last 1,000,000: 10s. Last read position: chr19:52,212,769 INFO 2026-05-29 00:32:06 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 02:02:12s. Time for last 1,000,000: 7s. Last read position: chr19:54,148,720 INFO 2026-05-29 00:32:15 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:02:20s. Time for last 1,000,000: 8s. Last read position: chr19:55,241,597 INFO 2026-05-29 00:32:20 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:02:25s. Time for last 1,000,000: 4s. Last read position: chr19:55,689,314 INFO 2026-05-29 00:32:24 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:02:29s. Time for last 1,000,000: 4s. Last read position: chr19:57,980,193 INFO 2026-05-29 00:32:34 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:02:39s. Time for last 1,000,000: 10s. Last read position: chr20:1,604,967 INFO 2026-05-29 00:32:40 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:02:45s. Time for last 1,000,000: 5s. Last read position: chr20:3,800,811 INFO 2026-05-29 00:32:47 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:02:52s. Time for last 1,000,000: 7s. Last read position: chr20:10,641,156 INFO 2026-05-29 00:32:57 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:03:02s. Time for last 1,000,000: 9s. Last read position: chr20:20,584,900 INFO 2026-05-29 00:33:05 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:03:11s. Time for last 1,000,000: 8s. Last read position: chr20:31,777,488 INFO 2026-05-29 00:33:14 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:03:19s. Time for last 1,000,000: 8s. Last read position: chr20:34,291,521 INFO 2026-05-29 00:33:28 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:03:34s. Time for last 1,000,000: 14s. Last read position: chr20:35,697,777 INFO 2026-05-29 00:33:39 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:03:44s. Time for last 1,000,000: 10s. Last read position: chr20:37,403,587 INFO 2026-05-29 00:33:47 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:03:52s. Time for last 1,000,000: 8s. Last read position: chr20:44,506,974 INFO 2026-05-29 00:34:06 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:04:12s. Time for last 1,000,000: 19s. Last read position: chr20:47,625,403 INFO 2026-05-29 00:34:14 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:04:19s. Time for last 1,000,000: 7s. Last read position: chr20:51,601,278 INFO 2026-05-29 00:34:18 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:04:23s. Time for last 1,000,000: 4s. Last read position: chr20:57,652,582 INFO 2026-05-29 00:34:39 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:04:45s. Time for last 1,000,000: 21s. Last read position: chr20:61,844,742 INFO 2026-05-29 00:34:48 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:04:53s. Time for last 1,000,000: 8s. Last read position: chr20:62,327,532 INFO 2026-05-29 00:34:57 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:05:02s. Time for last 1,000,000: 9s. Last read position: chr20:62,907,178 INFO 2026-05-29 00:35:05 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:05:10s. Time for last 1,000,000: 7s. Last read position: chr20:63,960,092 INFO 2026-05-29 00:35:07 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:05:13s. Time for last 1,000,000: 2s. Last read position: chr21:8,214,052 INFO 2026-05-29 00:35:08 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:05:13s. Time for last 1,000,000: 0s. Last read position: chr21:8,217,266 INFO 2026-05-29 00:35:09 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:05:14s. Time for last 1,000,000: 0s. Last read position: chr21:8,259,107 INFO 2026-05-29 00:35:10 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:05:15s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,091 INFO 2026-05-29 00:35:11 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:05:16s. Time for last 1,000,000: 1s. Last read position: chr21:8,437,592 INFO 2026-05-29 00:35:12 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:05:17s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,117 INFO 2026-05-29 00:35:17 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:05:22s. Time for last 1,000,000: 5s. Last read position: chr21:25,954,622 INFO 2026-05-29 00:35:28 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:05:33s. Time for last 1,000,000: 11s. Last read position: chr21:33,555,222 INFO 2026-05-29 00:35:46 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:05:52s. Time for last 1,000,000: 18s. Last read position: chr21:39,348,555 INFO 2026-05-29 00:35:55 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:06:00s. Time for last 1,000,000: 8s. Last read position: chr21:45,456,677 INFO 2026-05-29 00:36:07 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:06:12s. Time for last 1,000,000: 12s. Last read position: chr21:46,141,917 INFO 2026-05-29 00:36:19 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:06:24s. Time for last 1,000,000: 11s. Last read position: chr22:17,726,685 INFO 2026-05-29 00:36:29 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:06:35s. Time for last 1,000,000: 10s. Last read position: chr22:20,315,335 INFO 2026-05-29 00:36:42 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:06:47s. Time for last 1,000,000: 12s. Last read position: chr22:23,311,801 INFO 2026-05-29 00:36:52 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:06:58s. Time for last 1,000,000: 10s. Last read position: chr22:28,322,255 INFO 2026-05-29 00:37:09 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:07:14s. Time for last 1,000,000: 16s. Last read position: chr22:29,340,782 INFO 2026-05-29 00:37:22 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:07:28s. Time for last 1,000,000: 13s. Last read position: chr22:31,713,667 INFO 2026-05-29 00:37:33 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:07:39s. Time for last 1,000,000: 10s. Last read position: chr22:36,301,027 INFO 2026-05-29 00:37:40 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:07:46s. Time for last 1,000,000: 7s. Last read position: chr22:37,758,014 INFO 2026-05-29 00:37:49 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:07:54s. Time for last 1,000,000: 8s. Last read position: chr22:39,017,852 INFO 2026-05-29 00:37:58 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:08:03s. Time for last 1,000,000: 8s. Last read position: chr22:41,249,775 INFO 2026-05-29 00:38:08 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:08:13s. Time for last 1,000,000: 10s. Last read position: chr22:42,587,469 INFO 2026-05-29 00:38:15 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:08:21s. Time for last 1,000,000: 7s. Last read position: chr22:46,943,111 INFO 2026-05-29 00:38:26 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:08:31s. Time for last 1,000,000: 10s. Last read position: chr22:50,461,796 INFO 2026-05-29 00:38:31 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:08:37s. Time for last 1,000,000: 5s. Last read position: chrX:2,740,803 INFO 2026-05-29 00:38:39 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:08:44s. Time for last 1,000,000: 7s. Last read position: chrX:13,785,792 INFO 2026-05-29 00:38:47 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:08:52s. Time for last 1,000,000: 8s. Last read position: chrX:23,679,256 INFO 2026-05-29 00:38:58 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:09:03s. Time for last 1,000,000: 11s. Last read position: chrX:40,074,193 INFO 2026-05-29 00:39:24 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:09:30s. Time for last 1,000,000: 26s. Last read position: chrX:44,939,454 INFO 2026-05-29 00:39:36 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:09:42s. Time for last 1,000,000: 11s. Last read position: chrX:47,247,842 INFO 2026-05-29 00:39:49 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:09:54s. Time for last 1,000,000: 12s. Last read position: chrX:48,917,809 INFO 2026-05-29 00:39:54 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:10:00s. Time for last 1,000,000: 5s. Last read position: chrX:51,896,493 INFO 2026-05-29 00:40:05 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:10:10s. Time for last 1,000,000: 10s. Last read position: chrX:53,549,459 INFO 2026-05-29 00:40:29 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:10:35s. Time for last 1,000,000: 24s. Last read position: chrX:54,814,744 INFO 2026-05-29 00:40:37 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:10:42s. Time for last 1,000,000: 7s. Last read position: chrX:70,329,502 INFO 2026-05-29 00:40:54 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:10:59s. Time for last 1,000,000: 17s. Last read position: chrX:72,275,557 INFO 2026-05-29 00:41:10 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:11:15s. Time for last 1,000,000: 15s. Last read position: chrX:78,009,106 INFO 2026-05-29 00:41:15 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:11:21s. Time for last 1,000,000: 5s. Last read position: chrX:104,166,773 INFO 2026-05-29 00:41:23 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:11:29s. Time for last 1,000,000: 8s. Last read position: chrX:117,909,771 INFO 2026-05-29 00:41:34 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:11:40s. Time for last 1,000,000: 10s. Last read position: chrX:121,424,636 INFO 2026-05-29 00:41:48 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:11:53s. Time for last 1,000,000: 13s. Last read position: chrX:132,628,854 INFO 2026-05-29 00:41:56 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:12:01s. Time for last 1,000,000: 7s. Last read position: chrX:140,503,798 INFO 2026-05-29 00:42:03 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:12:08s. Time for last 1,000,000: 7s. Last read position: chrX:152,708,625 INFO 2026-05-29 00:42:09 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:12:14s. Time for last 1,000,000: 5s. Last read position: chrX:153,771,615 INFO 2026-05-29 00:42:19 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:12:25s. Time for last 1,000,000: 10s. Last read position: chrX:154,012,623 INFO 2026-05-29 00:42:29 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:12:34s. Time for last 1,000,000: 9s. Last read position: chrX:154,350,082 INFO 2026-05-29 00:42:50 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:12:56s. Time for last 1,000,000: 21s. Last read position: chrX:154,357,596 INFO 2026-05-29 00:43:27 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:13:33s. Time for last 1,000,000: 37s. Last read position: chrX:154,361,991 INFO 2026-05-29 00:44:21 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:14:26s. Time for last 1,000,000: 53s. Last read position: chrX:154,367,962 INFO 2026-05-29 00:44:42 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:14:47s. Time for last 1,000,000: 21s. Last read position: chrX:154,467,423 INFO 2026-05-29 00:44:49 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:14:55s. Time for last 1,000,000: 7s. Last read position: chrX:154,887,089 INFO 2026-05-29 00:44:54 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:14:59s. Time for last 1,000,000: 4s. Last read position: chrM:7,250 INFO 2026-05-29 00:44:55 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:15:00s. Time for last 1,000,000: 1s. Last read position: GL000220.1:112,960 INFO 2026-05-29 00:44:55 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:15:01s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,706 INFO 2026-05-29 00:44:56 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:15:01s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,123 INFO 2026-05-29 00:44:57 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:15:02s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,854 INFO 2026-05-29 00:44:57 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:15:03s. Time for last 1,000,000: 0s. Last read position: KI270733.1:131,006 INFO 2026-05-29 00:44:58 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:15:03s. Time for last 1,000,000: 0s. Last read position: KI270733.1:134,299 INFO 2026-05-29 00:44:59 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:15:04s. Time for last 1,000,000: 0s. Last read position: KI270733.1:176,085 INFO 2026-05-29 00:44:59 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:15:05s. Time for last 1,000,000: 0s. Last read position: KI270734.1:20,456 INFO 2026-05-29 00:45:00 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:15:06s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-29 00:45:01 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:15:06s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-29 00:45:01 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 02:15:07s. Time for last 1,000,000: 0s. Last read position: */* [Fri May 29 00:45:03 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 135.19 minutes. Runtime.totalMemory()=3498049536