Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/7652dc8cdc1df7ad4de341a3a0d64c/KG1_FFPE_01_RNA_0003_B23LG7FLT4_3_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/ef39aa798f9f9f927f16fe9c1e1931/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/ef39aa798f9f9f927f16fe9c1e1931/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/7652dc8cdc1df7ad4de341a3a0d64c/KG1_FFPE_01_RNA_0003_B23LG7FLT4_3_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory