Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/a7454a3dfcaaa419b1163060a7d622/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/a7454a3dfcaaa419b1163060a7d622/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/747e38380ef8a99cbcf9273f0e9ace/FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/747e38380ef8a99cbcf9273f0e9ace/FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory