File Info

Filename
Demultiplex_Stats.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L001/Reports/Demultiplex_Stats.csv
Size
5.6 KB
Workflow Run
dev_rna_exp0008_exp0011_73d51683
Published
Jun 07, 2026 11:32 PM

Content

View in new tab
Lane SampleID Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
1 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT-TCGCTCTGCT 97093326 95063366 2029960 0 0.0237 0.9791 0.0209 0.0000
1 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC-ATGCTGCAGG 117708491 115297005 2411486 0 0.0288 0.9795 0.0205 0.0000
1 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG-TGGTCCTCGT 993400 971171 22229 0 0.0002 0.9776 0.0224 0.0000
1 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC-ATTCCTCTGG 138003884 135101071 2902813 0 0.0337 0.9790 0.0210 0.0000
1 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG-TTCACTGGCT 163978631 160754883 3223748 0 0.0401 0.9803 0.0197 0.0000
1 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC-TCTATCTGAC 22469762 22052506 417256 0 0.0055 0.9814 0.0186 0.0000
1 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT-AGTGTGATAG 4455189 4342596 112593 0 0.0011 0.9747 0.0253 0.0000
1 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT-TTCGCCTTAG 137312087 132271682 5040405 0 0.0336 0.9633 0.0367 0.0000
1 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA-CCGTAACCTT 93942475 91344260 2598215 0 0.0230 0.9723 0.0277 0.0000
1 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG-ACTTGATTGG 129783474 126565333 3218141 0 0.0317 0.9752 0.0248 0.0000
1 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT-TGAAGATGGA 746698 731650 15048 0 0.0002 0.9798 0.0202 0.0000
1 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG-AATTCGGTGG 153846114 150821203 3024911 0 0.0376 0.9803 0.0197 0.0000
1 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG-CGTACGCCAT 144986424 141575643 3410781 0 0.0354 0.9765 0.0235 0.0000
1 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT-CTGCGTCGAA 147671452 144407964 3263488 0 0.0361 0.9779 0.0221 0.0000
1 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC-CTCCTAATCT 22565535 22026220 539315 0 0.0055 0.9761 0.0239 0.0000
1 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA-GAGTAACGTG 3952661 3856700 95961 0 0.0010 0.9757 0.0243 0.0000
1 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT-CTGTCTCATT 121277646 118241444 3036202 0 0.0296 0.9750 0.0250 0.0000
1 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC-GTACTCCGTC 79219932 77568795 1651137 0 0.0194 0.9792 0.0208 0.0000
1 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG-CCTGTCTAGA 122135601 119363122 2772479 0 0.0299 0.9773 0.0227 0.0000
1 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT-CCAAGAGGAT 1156592 1103284 53308 0 0.0003 0.9539 0.0461 0.0000
1 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT-TCACGGATGA 144602984 141070723 3532261 0 0.0354 0.9756 0.0244 0.0000
1 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT-AGTTCTTCCG 141285949 138401917 2884032 0 0.0345 0.9796 0.0204 0.0000
1 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA-AATGGAAGAC 21181551 20663141 518410 0 0.0052 0.9755 0.0245 0.0000
1 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT-ATAAGGTGAC 4438587 4340951 97636 0 0.0011 0.9780 0.0220 0.0000
1 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC-TGGAACGTAG 97851555 95920897 1930658 0 0.0239 0.9803 0.0197 0.0000
1 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG-CCTGTGGTTC 111060067 108526327 2533740 0 0.0272 0.9772 0.0228 0.0000
1 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT-ATTCGTACGG 155006911 151651159 3355752 0 0.0379 0.9784 0.0216 0.0000
1 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC-ACATTAGCGG 92513063 90484962 2028101 0 0.0226 0.9781 0.0219 0.0000
1 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA-GTGTTCTGTT 119228043 116555775 2672268 0 0.0291 0.9776 0.0224 0.0000
1 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC-TGTCACCTTA 4707692 4504498 203194 0 0.0012 0.9568 0.0432 0.0000
1 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG-GCATAACGGC 2536357 2467509 68848 0 0.0006 0.9729 0.0271 0.0000
1 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC-GAGCCTGCTT 70409954 52263871 18146083 0 0.0172 0.7423 0.2577 0.0000
1 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG-GTTCAGTAGA 112234239 109962156 2272083 0 0.0274 0.9798 0.0202 0.0000
1 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA-CTTAGCAGGC 97833841 95811146 2022695 0 0.0239 0.9793 0.0207 0.0000
1 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC-CTCGTGTAGC 125692739 122738960 2953779 0 0.0307 0.9765 0.0235 0.0000
1 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT-GCATTCGAAT 96190332 92953281 3237051 0 0.0235 0.9663 0.0337 0.0000
1 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG-ACCGGCCTTA 101766356 94668056 7098300 0 0.0249 0.9302 0.0698 0.0000
1 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT-CTGCATAGCA 3808200 3724266 83934 0 0.0009 0.9780 0.0220 0.0000
1 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA-CCTACAGCGT 4385111 4259924 125187 0 0.0011 0.9715 0.0285 0.0000
1 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT-TGGTTGGTAC 96028148 94182994 1845154 0 0.0235 0.9808 0.0192 0.0000
1 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC-GAGGATGGAT 129025307 126185660 2839647 0 0.0315 0.9780 0.0220 0.0000
1 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG-CTCACGAATC 112192335 106129101 6063234 0 0.0274 0.9460 0.0540 0.0000
1 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC-TGCTAGCGGT 117236169 114996907 2239262 0 0.0287 0.9809 0.0191 0.0000
1 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG-AGACGAGTCT 90952481 88280025 2672456 0 0.0222 0.9706 0.0294 0.0000
1 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC-TGGAAGCAGA 78858859 77087895 1770964 0 0.0193 0.9775 0.0225 0.0000
1 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT-GCCAATACAT 3818461 3739161 79300 0 0.0009 0.9792 0.0208 0.0000
1 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT-TGTGGATTAG 1628223 1593024 35199 0 0.0004 0.9784 0.0216 0.0000
1 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT-TATCTTCTCG 218630 210062 8568 0 0.0001 0.9608 0.0392 0.0000
1 Undetermined 250334217 250334217 0 0 0.0612 1.0000 0.0000 0.0000
50 rows