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Quality_Metrics.csv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L001/Reports/Quality_Metrics.csv
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dev_rna_exp0008_exp0011_73d51683
Published
Jun 07, 2026 11:32 PM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
1 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT TCGCTCTGCT 1 14661092226 13916800929 571047096735 38.95 0.95
1 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT TCGCTCTGCT 2 14661092226 13707328556 566427180440 38.63 0.93
1 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC ATGCTGCAGG 1 17773982141 16820219177 690703499759 38.86 0.95
1 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC ATGCTGCAGG 2 17773982141 16540897817 685174246715 38.55 0.93
1 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG TGGTCCTCGT 1 150003400 96413505 4818512982 32.12 0.64
1 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG TGGTCCTCGT 2 150003400 113579709 5286504975 35.24 0.76
1 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC ATTCCTCTGG 1 20838586484 19892416694 814412013860 39.08 0.95
1 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC ATTCCTCTGG 2 20838586484 19542829927 806472691951 38.70 0.94
1 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG TTCACTGGCT 1 24760773281 23528667037 965056428493 38.98 0.95
1 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG TTCACTGGCT 2 24760773281 23226032718 958556031501 38.71 0.94
1 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC TCTATCTGAC 1 3392934062 2952590301 125899927185 37.11 0.87
1 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC TCTATCTGAC 2 3392934062 3036607845 128215017726 37.79 0.89
1 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT AGTGTGATAG 1 672733539 566179008 24541467123 36.48 0.84
1 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT AGTGTGATAG 2 672733539 572078146 24778701553 36.83 0.85
1 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT TTCGCCTTAG 1 20734125137 19576392338 804666913325 38.81 0.94
1 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT TTCGCCTTAG 2 20734125137 19381371670 800887624885 38.63 0.93
1 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA CCGTAACCTT 1 14185313725 13416403934 550993920923 38.84 0.95
1 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA CCGTAACCTT 2 14185313725 13282474033 548477358580 38.67 0.94
1 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG ACTTGATTGG 1 19597304574 18483713400 760180655421 38.79 0.94
1 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG ACTTGATTGG 2 19597304574 18331625102 757532843852 38.65 0.94
1 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT TGAAGATGGA 1 112751398 82487695 3857832379 34.22 0.73
1 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT TGAAGATGGA 2 112751398 91802601 4117556349 36.52 0.81
1 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG AATTCGGTGG 1 23230763214 21957899874 901969935228 38.83 0.95
1 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG AATTCGGTGG 2 23230763214 21726955746 897872969970 38.65 0.94
1 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG CGTACGCCAT 1 21892950024 20704849394 850411837361 38.84 0.95
1 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG CGTACGCCAT 2 21892950024 20445048093 845463218055 38.62 0.93
1 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT CTGCGTCGAA 1 22298389252 21193271295 869081856009 38.98 0.95
1 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT CTGCGTCGAA 2 22298389252 20847030544 861685012207 38.64 0.93
1 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC CTCCTAATCT 1 3407395785 3040532089 128416240417 37.69 0.89
1 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC CTCCTAATCT 2 3407395785 3050403219 128794186077 37.80 0.90
1 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA GAGTAACGTG 1 596851811 507251539 21874728616 36.65 0.85
1 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA GAGTAACGTG 2 596851811 518417052 22225115037 37.24 0.87
1 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT CTGTCTCATT 1 18312924546 17351414954 712571025866 38.91 0.95
1 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT CTGTCTCATT 2 18312924546 17119963227 707632859040 38.64 0.93
1 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC GTACTCCGTC 1 11962209732 11380950265 466570707235 39.00 0.95
1 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC GTACTCCGTC 2 11962209732 11145338932 461408323093 38.57 0.93
1 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG CCTGTCTAGA 1 18442475751 17351745373 714309886852 38.73 0.94
1 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG CCTGTCTAGA 2 18442475751 17201969286 711660039621 38.59 0.93
1 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT CCAAGAGGAT 1 174645392 119373235 5786692657 33.13 0.68
1 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT CCAAGAGGAT 2 174645392 132363006 6165292521 35.30 0.76
1 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT TCACGGATGA 1 21835050584 20691885056 849222001844 38.89 0.95
1 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT TCACGGATGA 2 21835050584 20464146917 844829994659 38.69 0.94
1 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT AGTTCTTCCG 1 21334178299 20218802763 829655678106 38.89 0.95
1 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT AGTTCTTCCG 2 21334178299 20050826575 826656545152 38.75 0.94
1 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA AATGGAAGAC 1 3198414201 2805083878 119006657050 37.21 0.88
1 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA AATGGAAGAC 2 3198414201 2890572598 121471997161 37.98 0.90
1 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT ATAAGGTGAC 1 670226637 574681730 24721277753 36.88 0.86
1 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT ATAAGGTGAC 2 670226637 584604561 25054991625 37.38 0.87
1 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC TGGAACGTAG 1 14775584805 14041816792 575865630091 38.97 0.95
1 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC TGGAACGTAG 2 14775584805 13871187521 572173496432 38.72 0.94
1 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG CCTGTGGTTC 1 16770070117 15837780716 650865675251 38.81 0.94
1 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG CCTGTGGTTC 2 16770070117 15687959970 648216111096 38.65 0.94
1 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT ATTCGTACGG 1 23406043561 22390348968 915737140479 39.12 0.96
1 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT ATTCGTACGG 2 23406043561 21952723420 905945615395 38.71 0.94
1 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC ACATTAGCGG 1 13969472513 13170287023 541509154585 38.76 0.94
1 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC ACATTAGCGG 2 13969472513 13039053071 539274511292 38.60 0.93
1 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA GTGTTCTGTT 1 18003434493 16996229642 698467257800 38.80 0.94
1 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA GTGTTCTGTT 2 18003434493 16858077931 696303101371 38.68 0.94
1 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC TGTCACCTTA 1 710861492 596820274 25942732309 36.49 0.84
1 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC TGTCACCTTA 2 710861492 609490337 26376635900 37.11 0.86
1 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG GCATAACGGC 1 382989907 304516980 13571735361 35.44 0.80
1 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG GCATAACGGC 2 382989907 321190237 14051247979 36.69 0.84
1 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC GAGCCTGCTT 1 10631903054 10101933215 414131660483 38.95 0.95
1 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC GAGCCTGCTT 2 10631903054 9978043451 411584328821 38.71 0.94
1 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG GTTCAGTAGA 1 16947370089 16033777158 658367603187 38.85 0.95
1 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG GTTCAGTAGA 2 16947370089 15886790993 655791582809 38.70 0.94
1 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA CTTAGCAGGC 1 14772909991 13931701732 572873500681 38.78 0.94
1 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA CTTAGCAGGC 2 14772909991 13807793202 570742189581 38.63 0.93
1 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC CTCGTGTAGC 1 18979603589 17912487679 736260215044 38.79 0.94
1 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC CTCGTGTAGC 2 18979603589 17768392832 733854347972 38.67 0.94
1 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT GCATTCGAAT 1 14524740132 13763701895 564985545620 38.90 0.95
1 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT GCATTCGAAT 2 14524740132 13565635804 560961966793 38.62 0.93
1 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG ACCGGCCTTA 1 15366719756 14427189940 594379959940 38.68 0.94
1 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG ACCGGCCTTA 2 15366719756 14284813046 592051464977 38.53 0.93
1 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT CTGCATAGCA 1 575038200 458550914 20425484201 35.52 0.80
1 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT CTGCATAGCA 2 575038200 480782322 21092361810 36.68 0.84
1 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA CCTACAGCGT 1 662151761 538495636 23705190424 35.80 0.81
1 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA CCTACAGCGT 2 662151761 568483543 24586868512 37.13 0.86
1 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT TGGTTGGTAC 1 14500250348 13788486433 564926343331 38.96 0.95
1 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT TGGTTGGTAC 2 14500250348 13592727977 561085147283 38.69 0.94
1 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC GAGGATGGAT 1 19482821357 18465485720 758175760358 38.92 0.95
1 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC GAGGATGGAT 2 19482821357 18215675021 752896952654 38.64 0.93
1 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG CTCACGAATC 1 16941042585 15954830142 656443809369 38.75 0.94
1 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG CTCACGAATC 2 16941042585 15844913636 654799164803 38.65 0.94
1 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC TGCTAGCGGT 1 17702661519 16642540117 685315357135 38.71 0.94
1 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC TGCTAGCGGT 2 17702661519 16275339595 677751506635 38.29 0.92
1 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG AGACGAGTCT 1 13733824631 12840773887 530011448650 38.59 0.93
1 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG AGACGAGTCT 2 13733824631 12772951158 529256768946 38.54 0.93
1 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC TGGAAGCAGA 1 11907687709 11240477292 462247792857 38.82 0.94
1 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC TGGAAGCAGA 2 11907687709 11121898390 459832924720 38.62 0.93
1 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT GCCAATACAT 1 576587611 502076018 21498888071 37.29 0.87
1 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT GCCAATACAT 2 576587611 476776590 21058022067 36.52 0.83
1 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT TGTGGATTAG 1 245861673 169507032 8149047540 33.14 0.69
1 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT TGTGGATTAG 2 245861673 201378226 8979104410 36.52 0.82
1 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT TATCTTCTCG 1 33013130 26118491 1174979807 35.59 0.79
1 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT TATCTTCTCG 2 33013130 20006448 1047562581 31.73 0.61
1 Undetermined 1 37800466767 31708899614 1374674717480 36.37 0.84
1 Undetermined 2 37800466767 30389636504 1331880874070 35.23 0.80
99 rows