File Info
- Filename
- Adapter_Metrics.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L001/Reports/Adapter_Metrics.csv
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- 7.6 KB
- Workflow Run
- dev_rna_exp0008_exp0011_73d51683
- Published
- Jun 07, 2026 11:32 PM
Content
View in new tab| Lane | Sample_ID | index | index2 | ReadNumber | AdapterBases | SampleBases | % Adapter Bases |
| 1 | RT4_FFPE_RNA_0001_B23LG7FLT4_1 | TCACCGTGGT | TCGCTCTGCT | 1 | 0 | 14661092226 | 0.000 |
| 1 | RT4_FFPE_RNA_0001_B23LG7FLT4_1 | TCACCGTGGT | TCGCTCTGCT | 2 | 0 | 14661092226 | 0.000 |
| 1 | 786-O_FFPE_RNA_0001_B23LG7FLT4_1 | CAACTACCGC | ATGCTGCAGG | 1 | 0 | 17773982141 | 0.000 |
| 1 | 786-O_FFPE_RNA_0001_B23LG7FLT4_1 | CAACTACCGC | ATGCTGCAGG | 2 | 0 | 17773982141 | 0.000 |
| 1 | A549_FFPE_01_RNA_0001_B23LG7FLT4_1 | ACTCGTCCAG | TGGTCCTCGT | 1 | 0 | 150003400 | 0.000 |
| 1 | A549_FFPE_01_RNA_0001_B23LG7FLT4_1 | ACTCGTCCAG | TGGTCCTCGT | 2 | 0 | 150003400 | 0.000 |
| 1 | U118MG_FFPE_RNA_0001_B23LG7FLT4_1 | TCCGGAGAAC | ATTCCTCTGG | 1 | 0 | 20838586484 | 0.000 |
| 1 | U118MG_FFPE_RNA_0001_B23LG7FLT4_1 | TCCGGAGAAC | ATTCCTCTGG | 2 | 0 | 20838586484 | 0.000 |
| 1 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 | TTGTGAGAAG | TTCACTGGCT | 1 | 0 | 24760773281 | 0.000 |
| 1 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 | TTGTGAGAAG | TTCACTGGCT | 2 | 0 | 24760773281 | 0.000 |
| 1 | BT-20_FFPE_RNA_0001_B23LG7FLT4_1 | CCGAAGGTTC | TCTATCTGAC | 1 | 0 | 3392934062 | 0.000 |
| 1 | BT-20_FFPE_RNA_0001_B23LG7FLT4_1 | CCGAAGGTTC | TCTATCTGAC | 2 | 0 | 3392934062 | 0.000 |
| 1 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 | ATACACACCT | AGTGTGATAG | 1 | 0 | 672733539 | 0.000 |
| 1 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 | ATACACACCT | AGTGTGATAG | 2 | 0 | 672733539 | 0.000 |
| 1 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 | AGCCTCTGCT | TTCGCCTTAG | 1 | 0 | 20734125137 | 0.000 |
| 1 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 | AGCCTCTGCT | TTCGCCTTAG | 2 | 0 | 20734125137 | 0.000 |
| 1 | RT4_FFPE_RNA_0001_B23LG7FLT4_2 | CGGATCATTA | CCGTAACCTT | 1 | 0 | 14185313725 | 0.000 |
| 1 | RT4_FFPE_RNA_0001_B23LG7FLT4_2 | CGGATCATTA | CCGTAACCTT | 2 | 0 | 14185313725 | 0.000 |
| 1 | 786-O_FFPE_RNA_0001_B23LG7FLT4_2 | CTCTCTCTAG | ACTTGATTGG | 1 | 0 | 19597304574 | 0.000 |
| 1 | 786-O_FFPE_RNA_0001_B23LG7FLT4_2 | CTCTCTCTAG | ACTTGATTGG | 2 | 0 | 19597304574 | 0.000 |
| 1 | A549_FFPE_01_RNA_0001_B23LG7FLT4_2 | AAGGCTCCAT | TGAAGATGGA | 1 | 0 | 112751398 | 0.000 |
| 1 | A549_FFPE_01_RNA_0001_B23LG7FLT4_2 | AAGGCTCCAT | TGAAGATGGA | 2 | 0 | 112751398 | 0.000 |
| 1 | Hs746T_FFPE_RNA_0001_23LG7FLT4_1 | CTTGTTACTG | AATTCGGTGG | 1 | 0 | 23230763214 | 0.000 |
| 1 | Hs746T_FFPE_RNA_0001_23LG7FLT4_1 | CTTGTTACTG | AATTCGGTGG | 2 | 0 | 23230763214 | 0.000 |
| 1 | U118MG_FFPE_RNA_0001_B23LG7FLT4_2 | GATAGATCAG | CGTACGCCAT | 1 | 0 | 21892950024 | 0.000 |
| 1 | U118MG_FFPE_RNA_0001_B23LG7FLT4_2 | GATAGATCAG | CGTACGCCAT | 2 | 0 | 21892950024 | 0.000 |
| 1 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 | GCAGAAGTCT | CTGCGTCGAA | 1 | 0 | 22298389252 | 0.000 |
| 1 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 | GCAGAAGTCT | CTGCGTCGAA | 2 | 0 | 22298389252 | 0.000 |
| 1 | BT-20_FFPE_RNA_0001_B23LG7FLT4_2 | TATACGATGC | CTCCTAATCT | 1 | 0 | 3407395785 | 0.000 |
| 1 | BT-20_FFPE_RNA_0001_B23LG7FLT4_2 | TATACGATGC | CTCCTAATCT | 2 | 0 | 3407395785 | 0.000 |
| 1 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 | AACGCTCTGA | GAGTAACGTG | 1 | 0 | 596851811 | 0.000 |
| 1 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 | AACGCTCTGA | GAGTAACGTG | 2 | 0 | 596851811 | 0.000 |
| 1 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 | GATTGGCGAT | CTGTCTCATT | 1 | 0 | 18312924546 | 0.000 |
| 1 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 | GATTGGCGAT | CTGTCTCATT | 2 | 0 | 18312924546 | 0.000 |
| 1 | RT4_FFPE_RNA_0001_B23LG7FLT4_3 | CAAGACGGAC | GTACTCCGTC | 1 | 0 | 11962209732 | 0.000 |
| 1 | RT4_FFPE_RNA_0001_B23LG7FLT4_3 | CAAGACGGAC | GTACTCCGTC | 2 | 0 | 11962209732 | 0.000 |
| 1 | 786-O_FFPE_RNA_0001_B23LG7FLT4_3 | CCACTCAACG | CCTGTCTAGA | 1 | 0 | 18442475751 | 0.000 |
| 1 | 786-O_FFPE_RNA_0001_B23LG7FLT4_3 | CCACTCAACG | CCTGTCTAGA | 2 | 0 | 18442475751 | 0.000 |
| 1 | A549_FFPE_01_RNA_0001_B23LG7FLT4_3 | AGCCACTCGT | CCAAGAGGAT | 1 | 0 | 174645392 | 0.000 |
| 1 | A549_FFPE_01_RNA_0001_B23LG7FLT4_3 | AGCCACTCGT | CCAAGAGGAT | 2 | 0 | 174645392 | 0.000 |
| 1 | U118MG_FFPE_RNA_0001_B23LG7FLT4_3 | GCGAAGAATT | TCACGGATGA | 1 | 0 | 21835050584 | 0.000 |
| 1 | U118MG_FFPE_RNA_0001_B23LG7FLT4_3 | GCGAAGAATT | TCACGGATGA | 2 | 0 | 21835050584 | 0.000 |
| 1 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 | TGTCGGTGCT | AGTTCTTCCG | 1 | 0 | 21334178299 | 0.000 |
| 1 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 | TGTCGGTGCT | AGTTCTTCCG | 2 | 0 | 21334178299 | 0.000 |
| 1 | BT-20_FFPE_RNA_0001_B23LG7FLT4_3 | TCTACAGCTA | AATGGAAGAC | 1 | 0 | 3198414201 | 0.000 |
| 1 | BT-20_FFPE_RNA_0001_B23LG7FLT4_3 | TCTACAGCTA | AATGGAAGAC | 2 | 0 | 3198414201 | 0.000 |
| 1 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 | CAACCATGAT | ATAAGGTGAC | 1 | 0 | 670226637 | 0.000 |
| 1 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 | CAACCATGAT | ATAAGGTGAC | 2 | 0 | 670226637 | 0.000 |
| 1 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 | CGCACATTAC | TGGAACGTAG | 1 | 0 | 14775584805 | 0.000 |
| 1 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 | CGCACATTAC | TGGAACGTAG | 2 | 0 | 14775584805 | 0.000 |
| 1 | MCF7_FFPE_RNA_0001_B23LG7FLT4_1 | ATCTAACCTG | CCTGTGGTTC | 1 | 0 | 16770070117 | 0.000 |
| 1 | MCF7_FFPE_RNA_0001_B23LG7FLT4_1 | ATCTAACCTG | CCTGTGGTTC | 2 | 0 | 16770070117 | 0.000 |
| 1 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 | GCGACAATAT | ATTCGTACGG | 1 | 0 | 23406043561 | 0.000 |
| 1 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 | GCGACAATAT | ATTCGTACGG | 2 | 0 | 23406043561 | 0.000 |
| 1 | SW780_FFPE_RNA_0001_B23LG7FLT4_1 | TTGCCGTATC | ACATTAGCGG | 1 | 0 | 13969472513 | 0.000 |
| 1 | SW780_FFPE_RNA_0001_B23LG7FLT4_1 | TTGCCGTATC | ACATTAGCGG | 2 | 0 | 13969472513 | 0.000 |
| 1 | A673_FFPE_RNA_0001_B23LG7FLT4_1 | GATCCACTTA | GTGTTCTGTT | 1 | 0 | 18003434493 | 0.000 |
| 1 | A673_FFPE_RNA_0001_B23LG7FLT4_1 | GATCCACTTA | GTGTTCTGTT | 2 | 0 | 18003434493 | 0.000 |
| 1 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCCGAGATGC | TGTCACCTTA | 1 | 0 | 710861492 | 0.000 |
| 1 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCCGAGATGC | TGTCACCTTA | 2 | 0 | 710861492 | 0.000 |
| 1 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 | ATAGAGTTCG | GCATAACGGC | 1 | 0 | 382989907 | 0.000 |
| 1 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 | ATAGAGTTCG | GCATAACGGC | 2 | 0 | 382989907 | 0.000 |
| 1 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 | GCATTCCTTC | GAGCCTGCTT | 1 | 0 | 10631903054 | 0.000 |
| 1 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 | GCATTCCTTC | GAGCCTGCTT | 2 | 0 | 10631903054 | 0.000 |
| 1 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 | AATCGTGCGG | GTTCAGTAGA | 1 | 0 | 16947370089 | 0.000 |
| 1 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 | AATCGTGCGG | GTTCAGTAGA | 2 | 0 | 16947370089 | 0.000 |
| 1 | MCF7_FFPE_RNA_0001_B23LG7FLT4_2 | TACCGGAGCA | CTTAGCAGGC | 1 | 0 | 14772909991 | 0.000 |
| 1 | MCF7_FFPE_RNA_0001_B23LG7FLT4_2 | TACCGGAGCA | CTTAGCAGGC | 2 | 0 | 14772909991 | 0.000 |
| 1 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 | AGCACCAGTC | CTCGTGTAGC | 1 | 0 | 18979603589 | 0.000 |
| 1 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 | AGCACCAGTC | CTCGTGTAGC | 2 | 0 | 18979603589 | 0.000 |
| 1 | SW780_FFPE_RNA_0001_B23LG7FLT4_2 | TACCTAGACT | GCATTCGAAT | 1 | 0 | 14524740132 | 0.000 |
| 1 | SW780_FFPE_RNA_0001_B23LG7FLT4_2 | TACCTAGACT | GCATTCGAAT | 2 | 0 | 14524740132 | 0.000 |
| 1 | A673_FFPE_RNA_0001_B23LG7FLT4_2 | CAGACTGCAG | ACCGGCCTTA | 1 | 0 | 15366719756 | 0.000 |
| 1 | A673_FFPE_RNA_0001_B23LG7FLT4_2 | CAGACTGCAG | ACCGGCCTTA | 2 | 0 | 15366719756 | 0.000 |
| 1 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GTTAGTGCCT | CTGCATAGCA | 1 | 0 | 575038200 | 0.000 |
| 1 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GTTAGTGCCT | CTGCATAGCA | 2 | 0 | 575038200 | 0.000 |
| 1 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CGCAATAAGA | CCTACAGCGT | 1 | 0 | 662151761 | 0.000 |
| 1 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CGCAATAAGA | CCTACAGCGT | 2 | 0 | 662151761 | 0.000 |
| 1 | FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | TCGGTCTGTT | TGGTTGGTAC | 1 | 0 | 14500250348 | 0.000 |
| 1 | FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | TCGGTCTGTT | TGGTTGGTAC | 2 | 0 | 14500250348 | 0.000 |
| 1 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 | CTAGACGAGC | GAGGATGGAT | 1 | 0 | 19482821357 | 0.000 |
| 1 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 | CTAGACGAGC | GAGGATGGAT | 2 | 0 | 19482821357 | 0.000 |
| 1 | MCF7_FFPE_RNA_0001_B23LG7FLT4_3 | GTAATACTCG | CTCACGAATC | 1 | 0 | 16941042585 | 0.000 |
| 1 | MCF7_FFPE_RNA_0001_B23LG7FLT4_3 | GTAATACTCG | CTCACGAATC | 2 | 0 | 16941042585 | 0.000 |
| 1 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 | GATTCTTAGC | TGCTAGCGGT | 1 | 0 | 17702661519 | 0.000 |
| 1 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 | GATTCTTAGC | TGCTAGCGGT | 2 | 0 | 17702661519 | 0.000 |
| 1 | SW780_FFPE_RNA_0001_B23LG7FLT4_3 | TGTGATCGCG | AGACGAGTCT | 1 | 0 | 13733824631 | 0.000 |
| 1 | SW780_FFPE_RNA_0001_B23LG7FLT4_3 | TGTGATCGCG | AGACGAGTCT | 2 | 0 | 13733824631 | 0.000 |
| 1 | A673_FFPE_RNA_0001_B23LG7FLT4_3 | ATCGAGAGAC | TGGAAGCAGA | 1 | 0 | 11907687709 | 0.000 |
| 1 | A673_FFPE_RNA_0001_B23LG7FLT4_3 | ATCGAGAGAC | TGGAAGCAGA | 2 | 0 | 11907687709 | 0.000 |
| 1 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | CTGAACGTAT | GCCAATACAT | 1 | 0 | 576587611 | 0.000 |
| 1 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | CTGAACGTAT | GCCAATACAT | 2 | 0 | 576587611 | 0.000 |
| 1 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CACTAGACTT | TGTGGATTAG | 1 | 0 | 245861673 | 0.000 |
| 1 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CACTAGACTT | TGTGGATTAG | 2 | 0 | 245861673 | 0.000 |
| 1 | NTC_0001_0001_B23LG7FLT4_1 | CGTCGCCTAT | TATCTTCTCG | 1 | 0 | 33013130 | 0.000 |
| 1 | NTC_0001_0001_B23LG7FLT4_1 | CGTCGCCTAT | TATCTTCTCG | 2 | 0 | 33013130 | 0.000 |
| 1 | Undetermined | 1 | 0 | 37800466767 | 0.000 | ||
| 1 | Undetermined | 2 | 0 | 37800466767 | 0.000 |
99 rows