File Info

Filename
Quality_Metrics.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L003/Reports/Quality_Metrics.csv
Size
10.2 KB
Workflow Run
dev_rna_exp0008_exp0011_73d51683
Published
Jun 07, 2026 11:33 PM

Content

View in new tab
Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
3 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT TCGCTCTGCT 1 14655944636 13917153072 570838304454 38.95 0.95
3 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT TCGCTCTGCT 2 14655944636 13694658425 565810031135 38.61 0.93
3 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC ATGCTGCAGG 1 17696993281 16750602237 687615088575 38.85 0.95
3 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC ATGCTGCAGG 2 17696993281 16456421566 681616508041 38.52 0.93
3 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG TGGTCCTCGT 1 152571608 98512196 4908839408 32.17 0.65
3 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG TGGTCCTCGT 2 152571608 113673887 5332996709 34.95 0.75
3 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC ATTCCTCTGG 1 20756627157 19825942922 811273000871 39.09 0.96
3 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC ATTCCTCTGG 2 20756627157 19452854042 802667497322 38.67 0.94
3 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG TTCACTGGCT 1 24884327974 23665236777 970071398658 38.98 0.95
3 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG TTCACTGGCT 2 24884327974 23332752478 962722877908 38.69 0.94
3 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC TCTATCTGAC 1 3389282127 2951663319 125793610416 37.12 0.87
3 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC TCTATCTGAC 2 3389282127 3028705239 127907140509 37.74 0.89
3 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT AGTGTGATAG 1 670958081 565318548 24487170525 36.50 0.84
3 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT AGTGTGATAG 2 670958081 569341226 24675751907 36.78 0.85
3 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT TTCGCCTTAG 1 21016967767 19845331794 815474897616 38.80 0.94
3 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT TTCGCCTTAG 2 21016967767 19638846091 811326310342 38.60 0.93
3 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA CCGTAACCTT 1 14192656704 13423746724 551128169740 38.83 0.95
3 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA CCGTAACCTT 2 14192656704 13282757044 548378089684 38.64 0.94
3 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG ACTTGATTGG 1 19624239501 18515954812 761194146922 38.79 0.94
3 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG ACTTGATTGG 2 19624239501 18345988535 757999810352 38.63 0.93
3 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT TGAAGATGGA 1 113051284 83488752 3885220635 34.37 0.74
3 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT TGAAGATGGA 2 113051284 91224245 4111067273 36.36 0.81
3 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG AATTCGGTGG 1 23345500715 22070052260 906228431306 38.82 0.95
3 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG AATTCGGTGG 2 23345500715 21823946046 901692844641 38.62 0.93
3 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG CGTACGCCAT 1 21854967182 20671875451 848762787859 38.84 0.95
3 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG CGTACGCCAT 2 21854967182 20399259617 843399901391 38.59 0.93
3 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT CTGCGTCGAA 1 22470837594 21364595558 875772436979 38.97 0.95
3 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT CTGCGTCGAA 2 22470837594 20996121383 867698474567 38.61 0.93
3 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC CTCCTAATCT 1 3402664200 3043217260 128382826966 37.73 0.89
3 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC CTCCTAATCT 2 3402664200 3041145999 128441008347 37.75 0.89
3 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA GAGTAACGTG 1 598127006 508667167 21923620399 36.65 0.85
3 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA GAGTAACGTG 2 598127006 518513615 22241669417 37.19 0.87
3 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT CTGTCTCATT 1 18238538171 17287918649 709668428135 38.91 0.95
3 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT CTGTCTCATT 2 18238538171 17038384264 704171001145 38.61 0.93
3 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC GTACTCCGTC 1 11961623701 11386128538 466570048285 39.01 0.95
3 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC GTACTCCGTC 2 11961623701 11136049400 460985640236 38.54 0.93
3 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG CCTGTCTAGA 1 18376799962 17290803551 711563920850 38.72 0.94
3 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG CCTGTCTAGA 2 18376799962 17128718873 708534157865 38.56 0.93
3 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT CCAAGAGGAT 1 175998352 121453804 5858612740 33.29 0.69
3 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT CCAAGAGGAT 2 175998352 131771727 6178164945 35.10 0.75
3 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT TCACGGATGA 1 21723083329 20589338136 844737646302 38.89 0.95
3 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT TCACGGATGA 2 21723083329 20347782006 839872196727 38.66 0.94
3 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT AGTTCTTCCG 1 21361947350 20248406272 830588038657 38.88 0.95
3 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT AGTTCTTCCG 2 21361947350 20062802772 827065140312 38.72 0.94
3 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA AATGGAAGAC 1 3188647068 2797144253 118620488534 37.20 0.88
3 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA AATGGAAGAC 2 3188647068 2878599554 120971089265 37.94 0.90
3 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT ATAAGGTGAC 1 670044833 575457721 24732216280 36.91 0.86
3 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT ATAAGGTGAC 2 670044833 583024472 25008139739 37.32 0.87
3 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC TGGAACGTAG 1 14654073293 13932917521 571164616198 38.98 0.95
3 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC TGGAACGTAG 2 14654073293 13744898977 566945433850 38.69 0.94
3 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG CCTGTGGTTC 1 16699575314 15771025789 647917891894 38.80 0.94
3 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG CCTGTGGTTC 2 16699575314 15611302268 644964687443 38.62 0.93
3 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT ATTCGTACGG 1 23280959842 22279401091 910820192257 39.12 0.96
3 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT ATTCGTACGG 2 23280959842 21819199179 900346459797 38.67 0.94
3 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC ACATTAGCGG 1 13885554112 13092265000 538140437539 38.76 0.94
3 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC ACATTAGCGG 2 13885554112 12949720137 535546062486 38.57 0.93
3 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA GTGTTCTGTT 1 17926721963 16924654112 695308098194 38.79 0.94
3 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA GTGTTCTGTT 2 17926721963 16773959822 692758197413 38.64 0.94
3 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC TGTCACCTTA 1 710699016 598846706 25986636287 36.56 0.84
3 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC TGTCACCTTA 2 710699016 607182919 26311770151 37.02 0.85
3 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG GCATAACGGC 1 385617911 306743404 13662819385 35.43 0.80
3 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG GCATAACGGC 2 385617911 322338236 14120621600 36.62 0.84
3 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC GAGCCTGCTT 1 10625634138 10096599937 413801862256 38.94 0.95
3 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC GAGCCTGCTT 2 10625634138 9965716204 411027407851 38.68 0.94
3 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG GTTCAGTAGA 1 16908535758 15997522504 656666133970 38.84 0.95
3 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG GTTCAGTAGA 2 16908535758 15837473191 653703729385 38.66 0.94
3 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA CTTAGCAGGC 1 14665753445 13830435991 568524048814 38.77 0.94
3 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA CTTAGCAGGC 2 14665753445 13695294679 566072824738 38.60 0.93
3 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC CTCGTGTAGC 1 18929858602 17866451379 734142934908 38.78 0.94
3 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC CTCGTGTAGC 2 18929858602 17707065983 731272144238 38.63 0.94
3 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT GCATTCGAAT 1 14369866982 13620965593 558923513377 38.90 0.95
3 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT GCATTCGAAT 2 14369866982 13411253181 554514209472 38.59 0.93
3 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG ACCGGCCTTA 1 15341582333 14405038143 593268605835 38.67 0.94
3 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG ACCGGCCTTA 2 15341582333 14249353115 590548086101 38.49 0.93
3 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT CTGCATAGCA 1 575025667 459783698 20451122252 35.57 0.80
3 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT CTGCATAGCA 2 575025667 478770500 21043099112 36.60 0.83
3 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA CCTACAGCGT 1 663328353 539514695 23738977694 35.79 0.81
3 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA CCTACAGCGT 2 663328353 567799940 24585602663 37.06 0.86
3 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT TGGTTGGTAC 1 14425757367 13720009824 561926234796 38.95 0.95
3 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT TGGTTGGTAC 2 14425757367 13513529286 557757881655 38.66 0.94
3 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC GAGGATGGAT 1 19385313711 18381472340 754413646307 38.92 0.95
3 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC GAGGATGGAT 2 19385313711 18110811266 748479368825 38.61 0.93
3 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG CTCACGAATC 1 16912228312 15928202919 655123997100 38.74 0.94
3 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG CTCACGAATC 2 16912228312 15809293920 653200150968 38.62 0.93
3 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC TGCTAGCGGT 1 17647426776 16593343612 683098676758 38.71 0.94
3 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC TGCTAGCGGT 2 17647426776 16214247400 675088455757 38.25 0.92
3 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG AGACGAGTCT 1 13781265660 12885201201 531660886260 38.58 0.93
3 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG AGACGAGTCT 2 13781265660 12809048588 530662775090 38.51 0.93
3 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC TGGAAGCAGA 1 11820202537 11160156225 458802038280 38.82 0.94
3 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC TGGAAGCAGA 2 11820202537 11030113855 456017417890 38.58 0.93
3 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT GCCAATACAT 1 575771154 503109003 21503340711 37.35 0.87
3 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT GCCAATACAT 2 575771154 473408854 20963847826 36.41 0.82
3 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT TGTGGATTAG 1 246538908 170826835 8190243871 33.22 0.69
3 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT TGTGGATTAG 2 246538908 200370421 8969689888 36.38 0.81
3 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT TATCTTCTCG 1 33416904 26640148 1193620390 35.72 0.80
3 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT TATCTTCTCG 2 33416904 19364597 1039122296 31.10 0.58
3 Undetermined 1 38341330496 31766422487 1385135849216 36.13 0.83
3 Undetermined 2 38341330496 30626135666 1344599680067 35.07 0.80
99 rows