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Filename
Demultiplex_Stats.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L003/Reports/Demultiplex_Stats.csv
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5.6 KB
Workflow Run
dev_rna_exp0008_exp0011_73d51683
Published
Jun 07, 2026 11:33 PM

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Lane SampleID Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
3 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT-TCGCTCTGCT 97059236 94067667 2991569 0 0.0237 0.9692 0.0308 0.0000
3 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC-ATGCTGCAGG 117198631 113581378 3617253 0 0.0287 0.9691 0.0309 0.0000
3 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG-TGGTCCTCGT 1010408 977712 32696 0 0.0002 0.9676 0.0324 0.0000
3 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC-ATTCCTCTGG 137461107 133175409 4285698 0 0.0336 0.9688 0.0312 0.0000
3 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG-TTCACTGGCT 164796874 159957832 4839042 0 0.0403 0.9706 0.0294 0.0000
3 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC-TCTATCTGAC 22445577 21789388 656189 0 0.0055 0.9708 0.0292 0.0000
3 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT-AGTGTGATAG 4443431 4283386 160045 0 0.0011 0.9640 0.0360 0.0000
3 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT-TTCGCCTTAG 139185217 132811352 6373865 0 0.0340 0.9542 0.0458 0.0000
3 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA-CCGTAACCTT 93991104 90457132 3533972 0 0.0230 0.9624 0.0376 0.0000
3 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG-ACTTGATTGG 129961851 125421415 4540436 0 0.0318 0.9651 0.0349 0.0000
3 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT-TGAAGATGGA 748684 725776 22908 0 0.0002 0.9694 0.0306 0.0000
3 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG-AATTCGGTGG 154605965 150065026 4540939 0 0.0378 0.9706 0.0294 0.0000
3 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG-CGTACGCCAT 144734882 139938894 4795988 0 0.0354 0.9669 0.0331 0.0000
3 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT-CTGCGTCGAA 148813494 143993688 4819806 0 0.0364 0.9676 0.0324 0.0000
3 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC-CTCCTAATCT 22534200 21749348 784852 0 0.0055 0.9652 0.0348 0.0000
3 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA-GAGTAACGTG 3961106 3824224 136882 0 0.0010 0.9654 0.0346 0.0000
3 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT-CTGTCTCATT 120785021 116535518 4249503 0 0.0295 0.9648 0.0352 0.0000
3 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC-GTACTCCGTC 79216051 76729666 2486385 0 0.0194 0.9686 0.0314 0.0000
3 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG-CCTGTCTAGA 121700662 117694802 4005860 0 0.0298 0.9671 0.0329 0.0000
3 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT-CCAAGAGGAT 1165552 1101901 63651 0 0.0003 0.9454 0.0546 0.0000
3 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT-TCACGGATGA 143861479 138879456 4982023 0 0.0352 0.9654 0.0346 0.0000
3 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT-AGTTCTTCCG 141469850 137283270 4186580 0 0.0346 0.9704 0.0296 0.0000
3 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA-AATGGAAGAC 21116868 20371659 745209 0 0.0052 0.9647 0.0353 0.0000
3 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT-ATAAGGTGAC 4437383 4294450 142933 0 0.0011 0.9678 0.0322 0.0000
3 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC-TGGAACGTAG 97046843 94141584 2905259 0 0.0237 0.9701 0.0299 0.0000
3 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG-CCTGTGGTTC 110593214 106891387 3701827 0 0.0271 0.9665 0.0335 0.0000
3 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT-ATTCGTACGG 154178542 149226768 4951774 0 0.0377 0.9679 0.0321 0.0000
3 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC-ACATTAGCGG 91957312 88981985 2975327 0 0.0225 0.9676 0.0324 0.0000
3 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA-GTGTTCTGTT 118720013 114792299 3927714 0 0.0290 0.9669 0.0331 0.0000
3 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC-TGTCACCTTA 4706616 4455158 251458 0 0.0012 0.9466 0.0534 0.0000
3 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG-GCATAACGGC 2553761 2459061 94700 0 0.0006 0.9629 0.0371 0.0000
3 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC-GAGCCTGCTT 70368438 51437534 18930904 0 0.0172 0.7310 0.2690 0.0000
3 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG-GTTCAGTAGA 111977058 108608190 3368868 0 0.0274 0.9699 0.0301 0.0000
3 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA-CTTAGCAGGC 97124195 94139352 2984843 0 0.0238 0.9693 0.0307 0.0000
3 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC-CTCGTGTAGC 125363302 121165278 4198024 0 0.0307 0.9665 0.0335 0.0000
3 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT-GCATTCGAAT 95164682 90947346 4217336 0 0.0233 0.9557 0.0443 0.0000
3 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG-ACCGGCCTTA 101599883 93370073 8229810 0 0.0249 0.9190 0.0810 0.0000
3 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT-CTGCATAGCA 3808117 3684011 124106 0 0.0009 0.9674 0.0326 0.0000
3 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA-CCTACAGCGT 4392903 4228628 164275 0 0.0011 0.9626 0.0374 0.0000
3 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT-TGGTTGGTAC 95534817 92753866 2780951 0 0.0234 0.9709 0.0291 0.0000
3 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC-GAGGATGGAT 128379561 124177778 4201783 0 0.0314 0.9673 0.0327 0.0000
3 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG-CTCACGAATC 112001512 104755576 7245936 0 0.0274 0.9353 0.0647 0.0000
3 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC-TGCTAGCGGT 116870376 113478605 3391771 0 0.0286 0.9710 0.0290 0.0000
3 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG-AGACGAGTCT 91266660 87725492 3541168 0 0.0223 0.9612 0.0388 0.0000
3 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC-TGGAAGCAGA 78279487 75736375 2543112 0 0.0191 0.9675 0.0325 0.0000
3 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT-GCCAATACAT 3813054 3691544 121510 0 0.0009 0.9681 0.0319 0.0000
3 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT-TGTGGATTAG 1632708 1580291 52417 0 0.0004 0.9679 0.0321 0.0000
3 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT-TATCTTCTCG 221304 210552 10752 0 0.0001 0.9514 0.0486 0.0000
3 Undetermined 253916096 253916096 0 0 0.0621 1.0000 0.0000 0.0000
50 rows