File Info
- Filename
- Adapter_Metrics.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L003/Reports/Adapter_Metrics.csv
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- 7.6 KB
- Workflow Run
- dev_rna_exp0008_exp0011_73d51683
- Published
- Jun 07, 2026 11:33 PM
Content
View in new tab| Lane | Sample_ID | index | index2 | ReadNumber | AdapterBases | SampleBases | % Adapter Bases |
| 3 | RT4_FFPE_RNA_0001_B23LG7FLT4_1 | TCACCGTGGT | TCGCTCTGCT | 1 | 0 | 14655944636 | 0.000 |
| 3 | RT4_FFPE_RNA_0001_B23LG7FLT4_1 | TCACCGTGGT | TCGCTCTGCT | 2 | 0 | 14655944636 | 0.000 |
| 3 | 786-O_FFPE_RNA_0001_B23LG7FLT4_1 | CAACTACCGC | ATGCTGCAGG | 1 | 0 | 17696993281 | 0.000 |
| 3 | 786-O_FFPE_RNA_0001_B23LG7FLT4_1 | CAACTACCGC | ATGCTGCAGG | 2 | 0 | 17696993281 | 0.000 |
| 3 | A549_FFPE_01_RNA_0001_B23LG7FLT4_1 | ACTCGTCCAG | TGGTCCTCGT | 1 | 0 | 152571608 | 0.000 |
| 3 | A549_FFPE_01_RNA_0001_B23LG7FLT4_1 | ACTCGTCCAG | TGGTCCTCGT | 2 | 0 | 152571608 | 0.000 |
| 3 | U118MG_FFPE_RNA_0001_B23LG7FLT4_1 | TCCGGAGAAC | ATTCCTCTGG | 1 | 0 | 20756627157 | 0.000 |
| 3 | U118MG_FFPE_RNA_0001_B23LG7FLT4_1 | TCCGGAGAAC | ATTCCTCTGG | 2 | 0 | 20756627157 | 0.000 |
| 3 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 | TTGTGAGAAG | TTCACTGGCT | 1 | 0 | 24884327974 | 0.000 |
| 3 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 | TTGTGAGAAG | TTCACTGGCT | 2 | 0 | 24884327974 | 0.000 |
| 3 | BT-20_FFPE_RNA_0001_B23LG7FLT4_1 | CCGAAGGTTC | TCTATCTGAC | 1 | 0 | 3389282127 | 0.000 |
| 3 | BT-20_FFPE_RNA_0001_B23LG7FLT4_1 | CCGAAGGTTC | TCTATCTGAC | 2 | 0 | 3389282127 | 0.000 |
| 3 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 | ATACACACCT | AGTGTGATAG | 1 | 0 | 670958081 | 0.000 |
| 3 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 | ATACACACCT | AGTGTGATAG | 2 | 0 | 670958081 | 0.000 |
| 3 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 | AGCCTCTGCT | TTCGCCTTAG | 1 | 0 | 21016967767 | 0.000 |
| 3 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 | AGCCTCTGCT | TTCGCCTTAG | 2 | 0 | 21016967767 | 0.000 |
| 3 | RT4_FFPE_RNA_0001_B23LG7FLT4_2 | CGGATCATTA | CCGTAACCTT | 1 | 0 | 14192656704 | 0.000 |
| 3 | RT4_FFPE_RNA_0001_B23LG7FLT4_2 | CGGATCATTA | CCGTAACCTT | 2 | 0 | 14192656704 | 0.000 |
| 3 | 786-O_FFPE_RNA_0001_B23LG7FLT4_2 | CTCTCTCTAG | ACTTGATTGG | 1 | 0 | 19624239501 | 0.000 |
| 3 | 786-O_FFPE_RNA_0001_B23LG7FLT4_2 | CTCTCTCTAG | ACTTGATTGG | 2 | 0 | 19624239501 | 0.000 |
| 3 | A549_FFPE_01_RNA_0001_B23LG7FLT4_2 | AAGGCTCCAT | TGAAGATGGA | 1 | 0 | 113051284 | 0.000 |
| 3 | A549_FFPE_01_RNA_0001_B23LG7FLT4_2 | AAGGCTCCAT | TGAAGATGGA | 2 | 0 | 113051284 | 0.000 |
| 3 | Hs746T_FFPE_RNA_0001_23LG7FLT4_1 | CTTGTTACTG | AATTCGGTGG | 1 | 0 | 23345500715 | 0.000 |
| 3 | Hs746T_FFPE_RNA_0001_23LG7FLT4_1 | CTTGTTACTG | AATTCGGTGG | 2 | 0 | 23345500715 | 0.000 |
| 3 | U118MG_FFPE_RNA_0001_B23LG7FLT4_2 | GATAGATCAG | CGTACGCCAT | 1 | 0 | 21854967182 | 0.000 |
| 3 | U118MG_FFPE_RNA_0001_B23LG7FLT4_2 | GATAGATCAG | CGTACGCCAT | 2 | 0 | 21854967182 | 0.000 |
| 3 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 | GCAGAAGTCT | CTGCGTCGAA | 1 | 0 | 22470837594 | 0.000 |
| 3 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 | GCAGAAGTCT | CTGCGTCGAA | 2 | 0 | 22470837594 | 0.000 |
| 3 | BT-20_FFPE_RNA_0001_B23LG7FLT4_2 | TATACGATGC | CTCCTAATCT | 1 | 0 | 3402664200 | 0.000 |
| 3 | BT-20_FFPE_RNA_0001_B23LG7FLT4_2 | TATACGATGC | CTCCTAATCT | 2 | 0 | 3402664200 | 0.000 |
| 3 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 | AACGCTCTGA | GAGTAACGTG | 1 | 0 | 598127006 | 0.000 |
| 3 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 | AACGCTCTGA | GAGTAACGTG | 2 | 0 | 598127006 | 0.000 |
| 3 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 | GATTGGCGAT | CTGTCTCATT | 1 | 0 | 18238538171 | 0.000 |
| 3 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 | GATTGGCGAT | CTGTCTCATT | 2 | 0 | 18238538171 | 0.000 |
| 3 | RT4_FFPE_RNA_0001_B23LG7FLT4_3 | CAAGACGGAC | GTACTCCGTC | 1 | 0 | 11961623701 | 0.000 |
| 3 | RT4_FFPE_RNA_0001_B23LG7FLT4_3 | CAAGACGGAC | GTACTCCGTC | 2 | 0 | 11961623701 | 0.000 |
| 3 | 786-O_FFPE_RNA_0001_B23LG7FLT4_3 | CCACTCAACG | CCTGTCTAGA | 1 | 0 | 18376799962 | 0.000 |
| 3 | 786-O_FFPE_RNA_0001_B23LG7FLT4_3 | CCACTCAACG | CCTGTCTAGA | 2 | 0 | 18376799962 | 0.000 |
| 3 | A549_FFPE_01_RNA_0001_B23LG7FLT4_3 | AGCCACTCGT | CCAAGAGGAT | 1 | 0 | 175998352 | 0.000 |
| 3 | A549_FFPE_01_RNA_0001_B23LG7FLT4_3 | AGCCACTCGT | CCAAGAGGAT | 2 | 0 | 175998352 | 0.000 |
| 3 | U118MG_FFPE_RNA_0001_B23LG7FLT4_3 | GCGAAGAATT | TCACGGATGA | 1 | 0 | 21723083329 | 0.000 |
| 3 | U118MG_FFPE_RNA_0001_B23LG7FLT4_3 | GCGAAGAATT | TCACGGATGA | 2 | 0 | 21723083329 | 0.000 |
| 3 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 | TGTCGGTGCT | AGTTCTTCCG | 1 | 0 | 21361947350 | 0.000 |
| 3 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 | TGTCGGTGCT | AGTTCTTCCG | 2 | 0 | 21361947350 | 0.000 |
| 3 | BT-20_FFPE_RNA_0001_B23LG7FLT4_3 | TCTACAGCTA | AATGGAAGAC | 1 | 0 | 3188647068 | 0.000 |
| 3 | BT-20_FFPE_RNA_0001_B23LG7FLT4_3 | TCTACAGCTA | AATGGAAGAC | 2 | 0 | 3188647068 | 0.000 |
| 3 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 | CAACCATGAT | ATAAGGTGAC | 1 | 0 | 670044833 | 0.000 |
| 3 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 | CAACCATGAT | ATAAGGTGAC | 2 | 0 | 670044833 | 0.000 |
| 3 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 | CGCACATTAC | TGGAACGTAG | 1 | 0 | 14654073293 | 0.000 |
| 3 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 | CGCACATTAC | TGGAACGTAG | 2 | 0 | 14654073293 | 0.000 |
| 3 | MCF7_FFPE_RNA_0001_B23LG7FLT4_1 | ATCTAACCTG | CCTGTGGTTC | 1 | 0 | 16699575314 | 0.000 |
| 3 | MCF7_FFPE_RNA_0001_B23LG7FLT4_1 | ATCTAACCTG | CCTGTGGTTC | 2 | 0 | 16699575314 | 0.000 |
| 3 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 | GCGACAATAT | ATTCGTACGG | 1 | 0 | 23280959842 | 0.000 |
| 3 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 | GCGACAATAT | ATTCGTACGG | 2 | 0 | 23280959842 | 0.000 |
| 3 | SW780_FFPE_RNA_0001_B23LG7FLT4_1 | TTGCCGTATC | ACATTAGCGG | 1 | 0 | 13885554112 | 0.000 |
| 3 | SW780_FFPE_RNA_0001_B23LG7FLT4_1 | TTGCCGTATC | ACATTAGCGG | 2 | 0 | 13885554112 | 0.000 |
| 3 | A673_FFPE_RNA_0001_B23LG7FLT4_1 | GATCCACTTA | GTGTTCTGTT | 1 | 0 | 17926721963 | 0.000 |
| 3 | A673_FFPE_RNA_0001_B23LG7FLT4_1 | GATCCACTTA | GTGTTCTGTT | 2 | 0 | 17926721963 | 0.000 |
| 3 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCCGAGATGC | TGTCACCTTA | 1 | 0 | 710699016 | 0.000 |
| 3 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCCGAGATGC | TGTCACCTTA | 2 | 0 | 710699016 | 0.000 |
| 3 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 | ATAGAGTTCG | GCATAACGGC | 1 | 0 | 385617911 | 0.000 |
| 3 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 | ATAGAGTTCG | GCATAACGGC | 2 | 0 | 385617911 | 0.000 |
| 3 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 | GCATTCCTTC | GAGCCTGCTT | 1 | 0 | 10625634138 | 0.000 |
| 3 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 | GCATTCCTTC | GAGCCTGCTT | 2 | 0 | 10625634138 | 0.000 |
| 3 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 | AATCGTGCGG | GTTCAGTAGA | 1 | 0 | 16908535758 | 0.000 |
| 3 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 | AATCGTGCGG | GTTCAGTAGA | 2 | 0 | 16908535758 | 0.000 |
| 3 | MCF7_FFPE_RNA_0001_B23LG7FLT4_2 | TACCGGAGCA | CTTAGCAGGC | 1 | 0 | 14665753445 | 0.000 |
| 3 | MCF7_FFPE_RNA_0001_B23LG7FLT4_2 | TACCGGAGCA | CTTAGCAGGC | 2 | 0 | 14665753445 | 0.000 |
| 3 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 | AGCACCAGTC | CTCGTGTAGC | 1 | 0 | 18929858602 | 0.000 |
| 3 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 | AGCACCAGTC | CTCGTGTAGC | 2 | 0 | 18929858602 | 0.000 |
| 3 | SW780_FFPE_RNA_0001_B23LG7FLT4_2 | TACCTAGACT | GCATTCGAAT | 1 | 0 | 14369866982 | 0.000 |
| 3 | SW780_FFPE_RNA_0001_B23LG7FLT4_2 | TACCTAGACT | GCATTCGAAT | 2 | 0 | 14369866982 | 0.000 |
| 3 | A673_FFPE_RNA_0001_B23LG7FLT4_2 | CAGACTGCAG | ACCGGCCTTA | 1 | 0 | 15341582333 | 0.000 |
| 3 | A673_FFPE_RNA_0001_B23LG7FLT4_2 | CAGACTGCAG | ACCGGCCTTA | 2 | 0 | 15341582333 | 0.000 |
| 3 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GTTAGTGCCT | CTGCATAGCA | 1 | 0 | 575025667 | 0.000 |
| 3 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GTTAGTGCCT | CTGCATAGCA | 2 | 0 | 575025667 | 0.000 |
| 3 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CGCAATAAGA | CCTACAGCGT | 1 | 0 | 663328353 | 0.000 |
| 3 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CGCAATAAGA | CCTACAGCGT | 2 | 0 | 663328353 | 0.000 |
| 3 | FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | TCGGTCTGTT | TGGTTGGTAC | 1 | 0 | 14425757367 | 0.000 |
| 3 | FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | TCGGTCTGTT | TGGTTGGTAC | 2 | 0 | 14425757367 | 0.000 |
| 3 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 | CTAGACGAGC | GAGGATGGAT | 1 | 0 | 19385313711 | 0.000 |
| 3 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 | CTAGACGAGC | GAGGATGGAT | 2 | 0 | 19385313711 | 0.000 |
| 3 | MCF7_FFPE_RNA_0001_B23LG7FLT4_3 | GTAATACTCG | CTCACGAATC | 1 | 0 | 16912228312 | 0.000 |
| 3 | MCF7_FFPE_RNA_0001_B23LG7FLT4_3 | GTAATACTCG | CTCACGAATC | 2 | 0 | 16912228312 | 0.000 |
| 3 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 | GATTCTTAGC | TGCTAGCGGT | 1 | 0 | 17647426776 | 0.000 |
| 3 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 | GATTCTTAGC | TGCTAGCGGT | 2 | 0 | 17647426776 | 0.000 |
| 3 | SW780_FFPE_RNA_0001_B23LG7FLT4_3 | TGTGATCGCG | AGACGAGTCT | 1 | 0 | 13781265660 | 0.000 |
| 3 | SW780_FFPE_RNA_0001_B23LG7FLT4_3 | TGTGATCGCG | AGACGAGTCT | 2 | 0 | 13781265660 | 0.000 |
| 3 | A673_FFPE_RNA_0001_B23LG7FLT4_3 | ATCGAGAGAC | TGGAAGCAGA | 1 | 0 | 11820202537 | 0.000 |
| 3 | A673_FFPE_RNA_0001_B23LG7FLT4_3 | ATCGAGAGAC | TGGAAGCAGA | 2 | 0 | 11820202537 | 0.000 |
| 3 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | CTGAACGTAT | GCCAATACAT | 1 | 0 | 575771154 | 0.000 |
| 3 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | CTGAACGTAT | GCCAATACAT | 2 | 0 | 575771154 | 0.000 |
| 3 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CACTAGACTT | TGTGGATTAG | 1 | 0 | 246538908 | 0.000 |
| 3 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CACTAGACTT | TGTGGATTAG | 2 | 0 | 246538908 | 0.000 |
| 3 | NTC_0001_0001_B23LG7FLT4_1 | CGTCGCCTAT | TATCTTCTCG | 1 | 0 | 33416904 | 0.000 |
| 3 | NTC_0001_0001_B23LG7FLT4_1 | CGTCGCCTAT | TATCTTCTCG | 2 | 0 | 33416904 | 0.000 |
| 3 | Undetermined | 1 | 0 | 38341330496 | 0.000 | ||
| 3 | Undetermined | 2 | 0 | 38341330496 | 0.000 |
99 rows