File Info
- Filename
- Adapter_Metrics.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L005/Reports/Adapter_Metrics.csv
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- 7.8 KB
- Workflow Run
- dev_rna_exp0008_exp0011_73d51683
- Published
- Jun 07, 2026 11:34 PM
Content
View in new tab| Lane | Sample_ID | index | index2 | ReadNumber | AdapterBases | SampleBases | % Adapter Bases |
| 5 | LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 | CAACCATACA | ACCGGTTATA | 1 | 0 | 31246431208 | 0.000 |
| 5 | LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 | CAACCATACA | ACCGGTTATA | 2 | 0 | 31246431208 | 0.000 |
| 5 | LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTAGGCCGTT | GCCACTGTCT | 1 | 0 | 6848900205 | 0.000 |
| 5 | LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTAGGCCGTT | GCCACTGTCT | 2 | 0 | 6848900205 | 0.000 |
| 5 | LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CGGATTGATC | AGTCACAACA | 1 | 0 | 23392672209 | 0.000 |
| 5 | LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CGGATTGATC | AGTCACAACA | 2 | 0 | 23392672209 | 0.000 |
| 5 | BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 | ACTGGCAAGA | TGTTGTCCAT | 1 | 0 | 1988837610 | 0.000 |
| 5 | BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 | ACTGGCAAGA | TGTTGTCCAT | 2 | 0 | 1988837610 | 0.000 |
| 5 | BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACAAGAACCT | CGATACTGAA | 1 | 0 | 2128323256 | 0.000 |
| 5 | BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACAAGAACCT | CGATACTGAA | 2 | 0 | 2128323256 | 0.000 |
| 5 | BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 | AGAGTATGTG | AGATGGCTTC | 1 | 0 | 3053049823 | 0.000 |
| 5 | BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 | AGAGTATGTG | AGATGGCTTC | 2 | 0 | 3053049823 | 0.000 |
| 5 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 | ACTTAGATCG | CGGAATTCTT | 1 | 0 | 10305662722 | 0.000 |
| 5 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 | ACTTAGATCG | CGGAATTCTT | 2 | 0 | 10305662722 | 0.000 |
| 5 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 | GATCAACAAG | AAGCACTGTC | 1 | 0 | 4986343593 | 0.000 |
| 5 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 | GATCAACAAG | AAGCACTGTC | 2 | 0 | 4986343593 | 0.000 |
| 5 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 | ACCTTCGGAC | GACCGTAGAT | 1 | 0 | 624616634 | 0.000 |
| 5 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 | ACCTTCGGAC | GACCGTAGAT | 2 | 0 | 624616634 | 0.000 |
| 5 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 | TATCATGTCG | TAATCTGCAC | 1 | 0 | 4356464911 | 0.000 |
| 5 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 | TATCATGTCG | TAATCTGCAC | 2 | 0 | 4356464911 | 0.000 |
| 5 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 | CGTCTAGTAA | TTAATCCAGC | 1 | 0 | 3356189571 | 0.000 |
| 5 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 | CGTCTAGTAA | TTAATCCAGC | 2 | 0 | 3356189571 | 0.000 |
| 5 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 | TCTTAGGTGG | GATCACTGGT | 1 | 0 | 7403275263 | 0.000 |
| 5 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 | TCTTAGGTGG | GATCACTGGT | 2 | 0 | 7403275263 | 0.000 |
| 5 | HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TCGACGTTGG | GATAAGTGTG | 1 | 0 | 2781197879 | 0.000 |
| 5 | HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TCGACGTTGG | GATAAGTGTG | 2 | 0 | 2781197879 | 0.000 |
| 5 | HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AAGAGTACGA | GCAAGGACGT | 1 | 0 | 21119193257 | 0.000 |
| 5 | HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AAGAGTACGA | GCAAGGACGT | 2 | 0 | 21119193257 | 0.000 |
| 5 | ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CACGAGAAGT | GTCTGCGTAG | 1 | 0 | 1522258029 | 0.000 |
| 5 | ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CACGAGAAGT | GTCTGCGTAG | 2 | 0 | 1522258029 | 0.000 |
| 5 | ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 | GACAATTAGC | CCGGTCATGA | 1 | 0 | 1761877060 | 0.000 |
| 5 | ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 | GACAATTAGC | CCGGTCATGA | 2 | 0 | 1761877060 | 0.000 |
| 5 | BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 | TTCTACCGGC | TACTCGTAAG | 1 | 0 | 1579127498 | 0.000 |
| 5 | BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 | TTCTACCGGC | TACTCGTAAG | 2 | 0 | 1579127498 | 0.000 |
| 5 | SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTGAGAGTAT | ATCTGTGAGG | 1 | 0 | 3147773482 | 0.000 |
| 5 | SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTGAGAGTAT | ATCTGTGAGG | 2 | 0 | 3147773482 | 0.000 |
| 5 | SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 | CTGGAGAATA | TCCATACAAC | 1 | 0 | 8377585851 | 0.000 |
| 5 | SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 | CTGGAGAATA | TCCATACAAC | 2 | 0 | 8377585851 | 0.000 |
| 5 | EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TGACAAGAGG | AATCTGTTGG | 1 | 0 | 4273072141 | 0.000 |
| 5 | EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TGACAAGAGG | AATCTGTTGG | 2 | 0 | 4273072141 | 0.000 |
| 5 | EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TGTTCGCTCT | ACTTGCGTGT | 1 | 0 | 1576559139 | 0.000 |
| 5 | EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TGTTCGCTCT | ACTTGCGTGT | 2 | 0 | 1576559139 | 0.000 |
| 5 | OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AGGTATTCGG | AGATGTGCGC | 1 | 0 | 18955141891 | 0.000 |
| 5 | OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AGGTATTCGG | AGATGTGCGC | 2 | 0 | 18955141891 | 0.000 |
| 5 | HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 | ACGGCCTACA | TCTCACTCTA | 1 | 0 | 2209053292 | 0.000 |
| 5 | HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 | ACGGCCTACA | TCTCACTCTA | 2 | 0 | 2209053292 | 0.000 |
| 5 | HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 | CACGTAAGAG | TCAATCCGCG | 1 | 0 | 5579049095 | 0.000 |
| 5 | HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 | CACGTAAGAG | TCAATCCGCG | 2 | 0 | 5579049095 | 0.000 |
| 5 | ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | AATCGAACTC | ACGAACCTTA | 1 | 0 | 719514245 | 0.000 |
| 5 | ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | AATCGAACTC | ACGAACCTTA | 2 | 0 | 719514245 | 0.000 |
| 5 | ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AGGCTGGAGA | CAACTGTCAT | 1 | 0 | 4377642510 | 0.000 |
| 5 | ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AGGCTGGAGA | CAACTGTCAT | 2 | 0 | 4377642510 | 0.000 |
| 5 | BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 | TAAGCCACGC | TTACGAACGA | 1 | 0 | 1450685690 | 0.000 |
| 5 | BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 | TAAGCCACGC | TTACGAACGA | 2 | 0 | 1450685690 | 0.000 |
| 5 | SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TCAATCAGAG | GACTCTGGTT | 1 | 0 | 2804950481 | 0.000 |
| 5 | SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TCAATCAGAG | GACTCTGGTT | 2 | 0 | 2804950481 | 0.000 |
| 5 | SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AACATAAGGC | GTTAGCTTAG | 1 | 0 | 13938354282 | 0.000 |
| 5 | SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AACATAAGGC | GTTAGCTTAG | 2 | 0 | 13938354282 | 0.000 |
| 5 | SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 | TTGCAATGCG | CGAGACTTCA | 1 | 0 | 18369876612 | 0.000 |
| 5 | SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 | TTGCAATGCG | CGAGACTTCA | 2 | 0 | 18369876612 | 0.000 |
| 5 | EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | AACCGGCCTT | TGTTCAGATC | 1 | 0 | 24171599065 | 0.000 |
| 5 | EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | AACCGGCCTT | TGTTCAGATC | 2 | 0 | 24171599065 | 0.000 |
| 5 | EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 | CATTATCGCT | CGAGTTGCTT | 1 | 0 | 19340433340 | 0.000 |
| 5 | EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 | CATTATCGCT | CGAGTTGCTT | 2 | 0 | 19340433340 | 0.000 |
| 5 | EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 | CATTGAGCTA | ACTTCACATC | 1 | 0 | 1178954546 | 0.000 |
| 5 | EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 | CATTGAGCTA | ACTTCACATC | 2 | 0 | 1178954546 | 0.000 |
| 5 | EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | CTTCGGAATC | CGTCGGTAAG | 1 | 0 | 8390525041 | 0.000 |
| 5 | EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | CTTCGGAATC | CGTCGGTAAG | 2 | 0 | 8390525041 | 0.000 |
| 5 | EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 | AACCACACTA | CCTCTGCTGA | 1 | 0 | 26303290527 | 0.000 |
| 5 | EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 | AACCACACTA | CCTCTGCTGA | 2 | 0 | 26303290527 | 0.000 |
| 5 | OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 | GTACAGCGGA | CAATCTGTGT | 1 | 0 | 629722397 | 0.000 |
| 5 | OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 | GTACAGCGGA | CAATCTGTGT | 2 | 0 | 629722397 | 0.000 |
| 5 | OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACTTCAACAG | GCGTGAGCAT | 1 | 0 | 670577561 | 0.000 |
| 5 | OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACTTCAACAG | GCGTGAGCAT | 2 | 0 | 670577561 | 0.000 |
| 5 | OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 | TGGACAATAG | GAGTCCTGTG | 1 | 0 | 1828055377 | 0.000 |
| 5 | OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 | TGGACAATAG | GAGTCCTGTG | 2 | 0 | 1828055377 | 0.000 |
| 5 | HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCACACGGAT | CTTCTGATCG | 1 | 0 | 5037506923 | 0.000 |
| 5 | HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCACACGGAT | CTTCTGATCG | 2 | 0 | 5037506923 | 0.000 |
| 5 | HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 | AGGATACGGT | AACCACGTCA | 1 | 0 | 4032373158 | 0.000 |
| 5 | HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 | AGGATACGGT | AACCACGTCA | 2 | 0 | 4032373158 | 0.000 |
| 5 | HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 | GCTACAGGTC | TTATGCAGGA | 1 | 0 | 880972656 | 0.000 |
| 5 | HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 | GCTACAGGTC | TTATGCAGGA | 2 | 0 | 880972656 | 0.000 |
| 5 | HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GCCAAGTAAC | TGCGTGATGA | 1 | 0 | 2764414229 | 0.000 |
| 5 | HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GCCAAGTAAC | TGCGTGATGA | 2 | 0 | 2764414229 | 0.000 |
| 5 | OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 | TTGTGAAGGC | TCGTCAGTAC | 1 | 0 | 36222989699 | 0.000 |
| 5 | OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 | TTGTGAAGGC | TCGTCAGTAC | 2 | 0 | 36222989699 | 0.000 |
| 5 | OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTCGACTCCT | TGCCGTTAGC | 1 | 0 | 31207689893 | 0.000 |
| 5 | OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTCGACTCCT | TGCCGTTAGC | 2 | 0 | 31207689893 | 0.000 |
| 5 | OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 | CTGAGCTTGT | CTTCTTGCGT | 1 | 0 | 37356695736 | 0.000 |
| 5 | OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 | CTGAGCTTGT | CTTCTTGCGT | 2 | 0 | 37356695736 | 0.000 |
| 5 | FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | CCTCTGTCAT | CGTATCGATT | 1 | 0 | 90812512568 | 0.000 |
| 5 | FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | CCTCTGTCAT | CGTATCGATT | 2 | 0 | 90812512568 | 0.000 |
| 5 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 | GCAGATGTAA | TACACGCCTC | 1 | 0 | 72799132913 | 0.000 |
| 5 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 | GCAGATGTAA | TACACGCCTC | 2 | 0 | 72799132913 | 0.000 |
| 5 | NTC_0001_0001_B23LG7FLT4_2 | CTCATCATCT | TAAGCCTCTA | 1 | 0 | 44338885 | 0.000 |
| 5 | NTC_0001_0001_B23LG7FLT4_2 | CTCATCATCT | TAAGCCTCTA | 2 | 0 | 44338885 | 0.000 |
| 5 | Undetermined | 1 | 0 | 40521795411 | 0.000 | ||
| 5 | Undetermined | 2 | 0 | 40521795411 | 0.000 |
99 rows