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Quality_Metrics.csv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L005/Reports/Quality_Metrics.csv
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dev_rna_exp0008_exp0011_73d51683
Published
Jun 07, 2026 11:34 PM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
5 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 1 31246431208 28917286449 1198492392336 38.36 0.93
5 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 2 31246431208 29061737764 1204189330066 38.54 0.93
5 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 1 6848900205 6175313485 259187163940 37.84 0.90
5 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 2 6848900205 6327083390 263087973431 38.41 0.92
5 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 1 23392672209 21791188159 901098392632 38.52 0.93
5 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 2 23392672209 21815239097 902466898403 38.58 0.93
5 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 1 1988837610 1700873931 73141182540 36.78 0.86
5 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 2 1988837610 1804936216 75819331921 38.12 0.91
5 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 1 2128323256 1850590003 78992280406 37.11 0.87
5 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 2 2128323256 1921245701 80840062727 37.98 0.90
5 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 1 3053049823 2669724875 113558013596 37.19 0.87
5 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 2 3053049823 2820863604 117375559311 38.45 0.92
5 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 1 10305662722 9286293092 389605578593 37.80 0.90
5 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 2 10305662722 9445923609 394136021214 38.24 0.92
5 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 1 4986343593 4391521761 186288534657 37.36 0.88
5 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 2 4986343593 4513936251 189629934591 38.03 0.91
5 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 1 624616634 532359234 23018770266 36.85 0.85
5 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 2 624616634 554390368 23616915586 37.81 0.89
5 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 1 4356464911 3866700266 163327173551 37.49 0.89
5 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 2 4356464911 4000108281 166859828949 38.30 0.92
5 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 1 3356189571 2880813226 123540137521 36.81 0.86
5 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 2 3356189571 3063825425 128233798496 38.21 0.91
5 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 1 7403275263 6348422422 272666115616 36.83 0.86
5 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 2 7403275263 6594796208 278939957141 37.68 0.89
5 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 1 2781197879 2438836903 103613346085 37.25 0.88
5 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 2 2781197879 2515721527 105645960487 37.99 0.90
5 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 1 21119193257 19527254286 809638213557 38.34 0.92
5 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 2 21119193257 19744894594 816040249345 38.64 0.93
5 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 1 1522258029 1279085596 55606541347 36.53 0.84
5 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 2 1522258029 1375856547 57926176074 38.05 0.90
5 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 1 1761877060 1433056221 63141575394 35.84 0.81
5 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 2 1761877060 1599304027 67225924882 38.16 0.91
5 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 1 1579127498 1335393003 57838067376 36.63 0.85
5 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 2 1579127498 1430118678 60158326047 38.10 0.91
5 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 1 3147773482 2919039721 121125337543 38.48 0.93
5 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 2 3147773482 2900411967 120880194864 38.40 0.92
5 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 1 8377585851 7580890319 317489082365 37.90 0.90
5 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 2 8377585851 7795807637 323188032020 38.58 0.93
5 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 1 4273072141 3786157619 160046384261 37.45 0.89
5 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 2 4273072141 3946277681 164170364219 38.42 0.92
5 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 1 1576559139 1408297615 59418367621 37.69 0.89
5 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 2 1576559139 1443199624 60315705058 38.26 0.92
5 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 1 18955141891 17388392058 723730117758 38.18 0.92
5 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 2 18955141891 17570779718 729290761316 38.47 0.93
5 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 1 2209053292 1918501878 81939903324 37.09 0.87
5 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 2 2209053292 2007502278 84241362030 38.13 0.91
5 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 1 5579049095 4976687962 209810396683 37.61 0.89
5 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 2 5579049095 5126509365 213790636587 38.32 0.92
5 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 1 719514245 536177484 24765393054 34.42 0.75
5 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 2 719514245 614793476 26750062253 37.18 0.85
5 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 1 4377642510 3852819413 163393141721 37.32 0.88
5 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 2 4377642510 4048709438 168372841622 38.46 0.92
5 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 1 1450685690 1261458647 53930201549 37.18 0.87
5 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 2 1450685690 1321707383 55398424586 38.19 0.91
5 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 1 2804950481 2447843013 104230216125 37.16 0.87
5 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 2 2804950481 2569008603 107335228452 38.27 0.92
5 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 1 13938354282 12931789519 535702099198 38.43 0.93
5 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 2 13938354282 12974624139 537339946959 38.55 0.93
5 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 1 18369876612 16373196279 690955859484 37.61 0.89
5 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 2 18369876612 16774397611 701049184918 38.16 0.91
5 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 1 24171599065 22129018446 921746407821 38.13 0.92
5 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 2 24171599065 22539850130 932970432740 38.60 0.93
5 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 1 19340433340 17733617090 738004361225 38.16 0.92
5 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 2 19340433340 18006761240 745652876591 38.55 0.93
5 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 1 1178954546 970384664 42505997687 36.05 0.82
5 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 2 1178954546 1056111027 44710701153 37.92 0.90
5 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 1 8390525041 7534334879 316667134475 37.74 0.90
5 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 2 8390525041 7727276842 321540747235 38.32 0.92
5 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 1 26303290527 24216640412 1005824883170 38.24 0.92
5 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 2 26303290527 24674047023 1018243669821 38.71 0.94
5 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 1 629722397 490728802 22112389726 35.11 0.78
5 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 2 629722397 561119952 23853268329 37.88 0.89
5 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 1 670577561 540086483 23958045497 35.73 0.81
5 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 2 670577561 608536139 25586553209 38.16 0.91
5 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 1 1828055377 1554469949 67099301738 36.71 0.85
5 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 2 1828055377 1672626359 69973932617 38.28 0.91
5 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 1 5037506923 4593930267 191881144176 38.09 0.91
5 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 2 5037506923 4622391639 192844018824 38.28 0.92
5 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 1 4032373158 3588862912 151641161959 37.61 0.89
5 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 2 4032373158 3673798142 153880815029 38.16 0.91
5 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 1 880972656 718737956 31686004190 35.97 0.82
5 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 2 880972656 788625994 33388219540 37.90 0.90
5 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 1 2764414229 2466478383 104000225970 37.62 0.89
5 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 2 2764414229 2547854828 106060489595 38.37 0.92
5 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 1 36222989699 34002596725 1401341471314 38.69 0.94
5 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 2 36222989699 34133041116 1405320031209 38.80 0.94
5 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 1 31207689893 29254195806 1206164667177 38.65 0.94
5 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 2 31207689893 29308871801 1208510999096 38.72 0.94
5 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 1 37356695736 35500865611 1455924500419 38.97 0.95
5 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 2 37356695736 35367431746 1453146716758 38.90 0.95
5 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 1 90812512568 87432441735 3563954514579 39.25 0.96
5 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 2 90812512568 86158200418 3535970137522 38.94 0.95
5 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 1 72799132913 69349397386 2838318454930 38.99 0.95
5 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 2 72799132913 68984446166 2833140724838 38.92 0.95
5 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 1 44338885 30747641 1480925084 33.40 0.69
5 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 2 44338885 37549973 1650545195 37.23 0.85
5 Undetermined 1 40521795411 31642689006 1420604584935 35.06 0.78
5 Undetermined 2 40521795411 30794956571 1384666134911 34.17 0.76
99 rows