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Filename
Demultiplex_Stats.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L004/Reports/Demultiplex_Stats.csv
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5.6 KB
Workflow Run
dev_rna_exp0008_exp0011_73d51683
Published
Jun 07, 2026 11:43 PM

Content

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Lane SampleID Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
4 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT-TCGCTCTGCT 96305283 94504725 1800558 0 0.0237 0.9813 0.0187 0.0000
4 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC-ATGCTGCAGG 116076665 113908379 2168286 0 0.0286 0.9813 0.0187 0.0000
4 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG-TGGTCCTCGT 1014518 993193 21325 0 0.0002 0.9790 0.0210 0.0000
4 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC-ATTCCTCTGG 135718759 133111850 2606909 0 0.0334 0.9808 0.0192 0.0000
4 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG-TTCACTGGCT 164261194 161379564 2881630 0 0.0405 0.9825 0.0175 0.0000
4 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC-TCTATCTGAC 22256655 21885529 371126 0 0.0055 0.9833 0.0167 0.0000
4 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT-AGTGTGATAG 4428021 4320970 107051 0 0.0011 0.9758 0.0242 0.0000
4 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT-TTCGCCTTAG 139707178 134761533 4945645 0 0.0344 0.9646 0.0354 0.0000
4 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA-CCGTAACCTT 93714131 91295874 2418257 0 0.0231 0.9742 0.0258 0.0000
4 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG-ACTTGATTGG 129895756 126875647 3020109 0 0.0320 0.9767 0.0233 0.0000
4 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT-TGAAGATGGA 748677 734725 13952 0 0.0002 0.9814 0.0186 0.0000
4 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG-AATTCGGTGG 154563280 151835083 2728197 0 0.0381 0.9823 0.0177 0.0000
4 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG-CGTACGCCAT 143619493 140534332 3085161 0 0.0354 0.9785 0.0215 0.0000
4 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT-CTGCGTCGAA 148615762 145625056 2990706 0 0.0366 0.9799 0.0201 0.0000
4 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC-CTCCTAATCT 22408280 21901729 506551 0 0.0055 0.9774 0.0226 0.0000
4 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA-GAGTAACGTG 3954514 3865456 89058 0 0.0010 0.9775 0.0225 0.0000
4 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT-CTGTCTCATT 119860880 117046522 2814358 0 0.0295 0.9765 0.0235 0.0000
4 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC-GTACTCCGTC 77940353 76441670 1498683 0 0.0192 0.9808 0.0192 0.0000
4 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG-CCTGTCTAGA 121154310 118586258 2568052 0 0.0298 0.9788 0.0212 0.0000
4 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT-CCAAGAGGAT 1160767 1108260 52507 0 0.0003 0.9548 0.0452 0.0000
4 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT-TCACGGATGA 142654877 139406866 3248011 0 0.0351 0.9772 0.0228 0.0000
4 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT-AGTTCTTCCG 140602618 138033099 2569519 0 0.0346 0.9817 0.0183 0.0000
4 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA-AATGGAAGAC 21078299 20587098 491201 0 0.0052 0.9767 0.0233 0.0000
4 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT-ATAAGGTGAC 4409954 4320169 89785 0 0.0011 0.9796 0.0204 0.0000
4 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC-TGGAACGTAG 96079530 94331471 1748059 0 0.0237 0.9818 0.0182 0.0000
4 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG-CCTGTGGTTC 110032579 107672894 2359685 0 0.0271 0.9786 0.0214 0.0000
4 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT-ATTCGTACGG 154060235 151014821 3045414 0 0.0380 0.9802 0.0198 0.0000
4 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC-ACATTAGCGG 91445544 89625015 1820529 0 0.0225 0.9801 0.0199 0.0000
4 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA-GTGTTCTGTT 117717151 115287875 2429276 0 0.0290 0.9794 0.0206 0.0000
4 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC-TGTCACCTTA 4662828 4462931 199897 0 0.0011 0.9571 0.0429 0.0000
4 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG-GCATAACGGC 2512635 2448844 63791 0 0.0006 0.9746 0.0254 0.0000
4 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC-GAGCCTGCTT 69620090 51295585 18324505 0 0.0172 0.7368 0.2632 0.0000
4 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG-GTTCAGTAGA 111146754 109075064 2071690 0 0.0274 0.9814 0.0186 0.0000
4 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA-CTTAGCAGGC 95587510 93771244 1816266 0 0.0235 0.9810 0.0190 0.0000
4 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC-CTCGTGTAGC 124319055 121563981 2755074 0 0.0306 0.9778 0.0222 0.0000
4 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT-GCATTCGAAT 94137603 91096873 3040730 0 0.0232 0.9677 0.0323 0.0000
4 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG-ACCGGCCTTA 100200614 93323690 6876924 0 0.0247 0.9314 0.0686 0.0000
4 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT-CTGCATAGCA 3790765 3714437 76328 0 0.0009 0.9799 0.0201 0.0000
4 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA-CCTACAGCGT 4347318 4231968 115350 0 0.0011 0.9735 0.0265 0.0000
4 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT-TGGTTGGTAC 94624810 92986386 1638424 0 0.0233 0.9827 0.0173 0.0000
4 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC-GAGGATGGAT 127196580 124608238 2588342 0 0.0313 0.9797 0.0203 0.0000
4 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG-CTCACGAATC 111943349 105872536 6070813 0 0.0276 0.9458 0.0542 0.0000
4 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC-TGCTAGCGGT 116692273 114711512 1980761 0 0.0287 0.9830 0.0170 0.0000
4 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG-AGACGAGTCT 91231799 88757798 2474001 0 0.0225 0.9729 0.0271 0.0000
4 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC-TGGAAGCAGA 77948319 76351722 1596597 0 0.0192 0.9795 0.0205 0.0000
4 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT-GCCAATACAT 3779537 3706238 73299 0 0.0009 0.9806 0.0194 0.0000
4 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT-TGTGGATTAG 1631798 1599346 32452 0 0.0004 0.9801 0.0199 0.0000
4 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT-TATCTTCTCG 220386 211634 8752 0 0.0001 0.9603 0.0397 0.0000
4 Undetermined 248089917 248089917 0 0 0.0611 1.0000 0.0000 0.0000
50 rows