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Quality_Metrics.csv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L004/Reports/Quality_Metrics.csv
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dev_rna_exp0008_exp0011_73d51683
Published
Jun 07, 2026 11:43 PM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
4 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT TCGCTCTGCT 1 14542097733 13802915580 566478460578 38.95 0.95
4 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT TCGCTCTGCT 2 14542097733 13594173362 561794791079 38.63 0.93
4 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC ATGCTGCAGG 1 17527576415 16580748200 681070179650 38.86 0.95
4 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC ATGCTGCAGG 2 17527576415 16304355144 675518452497 38.54 0.93
4 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG TGGTCCTCGT 1 153192218 98749151 4926671135 32.16 0.64
4 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG TGGTCCTCGT 2 153192218 114859622 5374290776 35.08 0.75
4 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC ATTCCTCTGG 1 20493532609 19566501604 801094202623 39.09 0.95
4 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC ATTCCTCTGG 2 20493532609 19212499887 792983568567 38.69 0.94
4 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG TTCACTGGCT 1 24803440294 23578067504 967040897945 38.99 0.95
4 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG TTCACTGGCT 2 24803440294 23265899268 960214036518 38.71 0.94
4 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC TCTATCTGAC 1 3360754905 2925582880 124758614962 37.12 0.87
4 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC TCTATCTGAC 2 3360754905 3011599337 127085712560 37.81 0.90
4 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT AGTGTGATAG 1 668631171 563010953 24404007476 36.50 0.84
4 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT AGTGTGATAG 2 668631171 569475330 24652728894 36.87 0.85
4 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT TTCGCCTTAG 1 21095783878 19905938903 818518034765 38.80 0.94
4 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT TTCGCCTTAG 2 21095783878 19718771570 814862127131 38.63 0.93
4 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA CCGTAACCTT 1 14150833781 13375488753 549491907546 38.83 0.95
4 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA CCGTAACCTT 2 14150833781 13248755170 547117001992 38.66 0.94
4 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG ACTTGATTGG 1 19614259156 18495830173 760833589147 38.79 0.94
4 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG ACTTGATTGG 2 19614259156 18347540868 758197215477 38.66 0.94
4 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT TGAAGATGGA 1 113050227 83580376 3888954589 34.40 0.74
4 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT TGAAGATGGA 2 113050227 91662839 4122462209 36.47 0.81
4 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG AATTCGGTGG 1 23339055280 22048475882 905913782903 38.82 0.94
4 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG AATTCGGTGG 2 23339055280 21824723888 901988117426 38.65 0.94
4 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG CGTACGCCAT 1 21686543443 20498429623 842191239295 38.83 0.95
4 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG CGTACGCCAT 2 21686543443 20248956320 837425257145 38.61 0.93
4 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT CTGCGTCGAA 1 22440980062 21328096688 874752985403 38.98 0.95
4 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT CTGCGTCGAA 2 22440980062 20976285861 867115245858 38.64 0.93
4 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC CTCCTAATCT 1 3383650280 3027407566 127746702079 37.75 0.89
4 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC CTCCTAATCT 2 3383650280 3030995045 127938266639 37.81 0.90
4 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA GAGTAACGTG 1 597131614 507451283 21886416005 36.65 0.85
4 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA GAGTAACGTG 2 597131614 519201705 22251725574 37.26 0.87
4 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT CTGTCTCATT 1 18098992880 17148047238 704328501912 38.92 0.95
4 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT CTGTCTCATT 2 18098992880 16918025732 699315189212 38.64 0.93
4 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC GTACTCCGTC 1 11768993303 11198433467 459129451196 39.01 0.95
4 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC GTACTCCGTC 2 11768993303 10962168004 453885092770 38.57 0.93
4 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG CCTGTCTAGA 1 18294300810 17201776355 708339392804 38.72 0.94
4 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG CCTGTCTAGA 2 18294300810 17063850598 705945359983 38.59 0.93
4 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT CCAAGAGGAT 1 175275817 120937309 5836512259 33.30 0.69
4 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT CCAAGAGGAT 2 175275817 131600239 6163730518 35.17 0.75
4 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT TCACGGATGA 1 21540886427 20405940542 837719752406 38.89 0.95
4 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT TCACGGATGA 2 21540886427 20184239707 833356774936 38.69 0.94
4 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT AGTTCTTCCG 1 21230995318 20111629266 825501206499 38.88 0.95
4 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT AGTTCTTCCG 2 21230995318 19946795551 822508021612 38.74 0.94
4 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA AATGGAAGAC 1 3182823149 2789802162 118388004498 37.20 0.88
4 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA AATGGAAGAC 2 3182823149 2879258492 120942784535 38.00 0.90
4 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT ATAAGGTGAC 1 665903054 571824102 24587633136 36.92 0.86
4 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT ATAAGGTGAC 2 665903054 580756589 24896873711 37.39 0.87
4 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC TGGAACGTAG 1 14508009030 13789275272 565576440626 38.98 0.95
4 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC TGGAACGTAG 2 14508009030 13614332460 561684550251 38.72 0.94
4 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG CCTGTGGTTC 1 16614919429 15680744085 644597401392 38.80 0.94
4 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG CCTGTGGTTC 2 16614919429 15539342464 642139772683 38.65 0.94
4 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT ATTCGTACGG 1 23263095485 22253843143 910262078014 39.13 0.96
4 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT ATTCGTACGG 2 23263095485 21811482995 900261582617 38.70 0.94
4 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC ACATTAGCGG 1 13808277144 13011692272 535158102118 38.76 0.94
4 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC ACATTAGCGG 2 13808277144 12886352826 533009360946 38.60 0.93
4 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA GTGTTCTGTT 1 17775289801 16772244630 689448132453 38.79 0.94
4 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA GTGTTCTGTT 2 17775289801 16639966992 687378837462 38.67 0.94
4 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC TGTCACCTTA 1 704087028 593267059 25755823660 36.58 0.84
4 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC TGTCACCTTA 2 704087028 603691309 26132263516 37.12 0.86
4 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG GCATAACGGC 1 379407885 301235377 13434250765 35.41 0.79
4 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG GCATAACGGC 2 379407885 317950942 13920093604 36.69 0.84
4 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC GAGCCTGCTT 1 10512633590 9984162405 409431106959 38.95 0.95
4 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC GAGCCTGCTT 2 10512633590 9863072628 406905364509 38.71 0.94
4 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG GTTCAGTAGA 1 16783159854 15868093251 651764118048 38.83 0.95
4 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG GTTCAGTAGA 2 16783159854 15729188988 649344090744 38.69 0.94
4 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA CTTAGCAGGC 1 14433714010 13602526816 559491842995 38.76 0.94
4 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA CTTAGCAGGC 2 14433714010 13486830632 557556480776 38.63 0.93
4 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC CTCGTGTAGC 1 18772177305 17706710537 728027606990 38.78 0.94
4 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC CTCGTGTAGC 2 18772177305 17571256432 725772337708 38.66 0.94
4 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT GCATTCGAAT 1 14214778053 13467594391 552954120019 38.90 0.95
4 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT GCATTCGAAT 2 14214778053 13272088228 548902554859 38.61 0.93
4 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG ACCGGCCTTA 1 15130292714 14196986994 585075705999 38.67 0.94
4 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG ACCGGCCTTA 2 15130292714 14061006715 582856252066 38.52 0.93
4 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT CTGCATAGCA 1 572405515 457046937 20352007113 35.56 0.80
4 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT CTGCATAGCA 2 572405515 477859994 20987140700 36.66 0.83
4 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA CCTACAGCGT 1 656445018 533416825 23487140149 35.78 0.81
4 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA CCTACAGCGT 2 656445018 562934169 24366049056 37.12 0.86
4 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT TGGTTGGTAC 1 14288346310 13581089354 556580141282 38.95 0.95
4 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT TGGTTGGTAC 2 14288346310 13388054966 552755375936 38.69 0.94
4 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC GAGGATGGAT 1 19206683580 18206997588 747631560261 38.93 0.95
4 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC GAGGATGGAT 2 19206683580 17953786459 742136825653 38.64 0.93
4 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG CTCACGAATC 1 16903445699 15909020181 654735287859 38.73 0.94
4 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG CTCACGAATC 2 16903445699 15810345590 653364208685 38.65 0.94
4 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC TGCTAGCGGT 1 17620533223 16560147358 682146791008 38.71 0.94
4 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC TGCTAGCGGT 2 17620533223 16205847554 674788965701 38.30 0.92
4 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG AGACGAGTCT 1 13776001649 12869069392 531368866972 38.57 0.93
4 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG AGACGAGTCT 2 13776001649 12814747404 530944575459 38.54 0.93
4 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC TGGAAGCAGA 1 11770196169 11108816389 456943960333 38.82 0.94
4 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC TGGAAGCAGA 2 11770196169 10992451928 454500304457 38.61 0.93
4 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT GCCAATACAT 1 570710087 498859013 21326370419 37.37 0.87
4 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT GCCAATACAT 2 570710087 470439589 20817783646 36.48 0.82
4 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT TGTGGATTAG 1 246401498 170713541 8188311071 33.23 0.69
4 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT TGTGGATTAG 2 246401498 201269810 8990713124 36.49 0.82
4 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT TATCTTCTCG 1 33278286 26563944 1189885272 35.76 0.80
4 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT TATCTTCTCG 2 33278286 19487919 1040263182 31.26 0.59
4 Undetermined 1 37461577467 30890124783 1350471704592 36.05 0.82
4 Undetermined 2 37461577467 29775716333 1310588129570 34.98 0.79
99 rows