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Quality_Metrics.csv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L008/Reports/Quality_Metrics.csv
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dev_rna_exp0008_exp0011_73d51683
Published
Jun 07, 2026 11:46 PM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
8 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 1 31522800317 29256942187 1211396206258 38.43 0.93
8 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 2 31522800317 29311263722 1214705375261 38.53 0.93
8 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 1 6769297082 6104747338 256127883787 37.84 0.90
8 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 2 6769297082 6250644177 259959726798 38.40 0.92
8 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 1 23547649398 21943624372 906969773608 38.52 0.93
8 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 2 23547649398 21959988296 908467832321 38.58 0.93
8 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 1 1997387683 1711786626 73540781427 36.82 0.86
8 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 2 1997387683 1812554750 76134193709 38.12 0.91
8 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 1 2129082182 1851566374 79000275457 37.11 0.87
8 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 2 2129082182 1916554980 80742220107 37.92 0.90
8 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 1 3056292246 2678609110 113832278899 37.25 0.88
8 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 2 3056292246 2820629202 117424811244 38.42 0.92
8 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 1 10348204405 9350334954 391889329443 37.87 0.90
8 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 2 10348204405 9485730078 395781747858 38.25 0.92
8 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 1 5010461162 4415779197 187204043106 37.36 0.88
8 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 2 5010461162 4524846182 190291022615 37.98 0.90
8 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 1 620441031 524695810 22767267475 36.70 0.85
8 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 2 620441031 550877175 23455980132 37.81 0.89
8 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 1 4365877496 3884428691 163932424940 37.55 0.89
8 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 2 4365877496 4004810600 167129055647 38.28 0.92
8 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 1 3352399169 2883363948 123563544336 36.86 0.86
8 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 2 3352399169 3055393933 127971235504 38.17 0.91
8 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 1 7384160173 6342254741 272204884895 36.86 0.86
8 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 2 7384160173 6570285518 278070249401 37.66 0.89
8 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 1 2786831991 2445710557 103841478415 37.26 0.88
8 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 2 2786831991 2511738736 105636488878 37.91 0.90
8 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 1 21216632198 19657143174 814315112343 38.38 0.93
8 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 2 21216632198 19835842480 819820785559 38.64 0.93
8 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 1 1499515919 1255879696 54654771784 36.45 0.84
8 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 2 1499515919 1353639298 57016136989 38.02 0.90
8 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 1 1757499268 1430054724 62977145610 35.83 0.81
8 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 2 1757499268 1594618467 67033402431 38.14 0.91
8 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 1 1586542957 1337356587 57971685918 36.54 0.84
8 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 2 1586542957 1436000366 60412909133 38.08 0.91
8 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 1 3120490651 2882858766 119801011581 38.39 0.92
8 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 2 3120490651 2871555630 119743636674 38.37 0.92
8 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 1 8346828661 7563712752 316558748601 37.93 0.91
8 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 2 8346828661 7759904984 321826899221 38.56 0.93
8 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 1 4258469837 3777551450 159574161629 37.47 0.89
8 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 2 4258469837 3928707184 163516760569 38.40 0.92
8 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 1 1571511058 1397971499 59077308413 37.59 0.89
8 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 2 1571511058 1437024774 60089624355 38.24 0.91
8 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 1 19088551146 17558842115 730142472347 38.25 0.92
8 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 2 19088551146 17692959279 734413657854 38.47 0.93
8 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 1 2201866296 1920072582 81889916700 37.19 0.87
8 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 2 2201866296 2000514826 83948818939 38.13 0.91
8 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 1 5618894069 5022159722 211523082854 37.64 0.89
8 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 2 5618894069 5158925553 215228081016 38.30 0.92
8 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 1 713589760 530528464 24522872473 34.37 0.74
8 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 2 713589760 611185226 26546658446 37.20 0.86
8 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 1 4384094136 3866206748 163795971620 37.36 0.88
8 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 2 4384094136 4051897406 168559074779 38.45 0.92
8 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 1 1446840626 1252545766 53631160531 37.07 0.87
8 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 2 1446840626 1317102751 55222868122 38.17 0.91
8 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 1 2803902843 2452605916 104340739369 37.21 0.87
8 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 2 2803902843 2565409315 107235981688 38.25 0.91
8 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 1 14170610553 13143321040 544302201736 38.41 0.93
8 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 2 14170610553 13190534018 546305263295 38.55 0.93
8 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 1 18482838655 16546747788 697170441690 37.72 0.90
8 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 2 18482838655 16871282442 705263191497 38.16 0.91
8 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 1 24314550614 22278200941 927363001261 38.14 0.92
8 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 2 24314550614 22660622527 938257048693 38.59 0.93
8 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 1 19401667162 17803671173 740428655333 38.16 0.92
8 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 2 19401667162 18056655465 747899469678 38.55 0.93
8 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 1 1174944439 969062306 42413016209 36.10 0.82
8 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 2 1174944439 1050560832 44504791923 37.88 0.89
8 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 1 8263370206 7426379620 311908313689 37.75 0.90
8 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 2 8263370206 7602558404 316514517095 38.30 0.92
8 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 1 26267750865 24237899695 1005785053807 38.29 0.92
8 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 2 26267750865 24631506834 1016670920910 38.70 0.94
8 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 1 625917046 489853719 22039646643 35.21 0.78
8 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 2 625917046 557880082 23703269149 37.87 0.89
8 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 1 671541998 540526119 23977573752 35.71 0.80
8 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 2 671541998 609304932 25619857794 38.15 0.91
8 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 1 1826948245 1552961927 67022151695 36.69 0.85
8 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 2 1826948245 1669577147 69884523725 38.25 0.91
8 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 1 5006685860 4559313177 190502111544 38.05 0.91
8 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 2 5006685860 4596176308 191710652905 38.29 0.92
8 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 1 4009650829 3558378592 150479120500 37.53 0.89
8 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 2 4009650829 3650306875 152949163051 38.15 0.91
8 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 1 875363308 712663819 31438079875 35.91 0.81
8 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 2 875363308 782737802 33148645049 37.87 0.89
8 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 1 2761213180 2462741488 103797151315 37.59 0.89
8 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 2 2761213180 2542870027 105898567972 38.35 0.92
8 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 1 36406005474 34180908621 1408006936563 38.68 0.94
8 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 2 36406005474 34301508079 1412351077837 38.79 0.94
8 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 1 31149986451 29214409690 1203824295736 38.65 0.94
8 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 2 31149986451 29254523277 1206312895128 38.73 0.94
8 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 1 37344320682 35439120631 1454000760997 38.93 0.95
8 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 2 37344320682 35354261605 1452651234958 38.90 0.95
8 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 1 92279156089 88879919201 3621581567543 39.25 0.96
8 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 2 92279156089 87642811424 3595135142456 38.96 0.95
8 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 1 73806075809 70426270928 2879971991633 39.02 0.95
8 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 2 73806075809 69996703301 2873574783677 38.93 0.95
8 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 1 43933903 30207004 1460776135 33.25 0.69
8 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 2 43933903 37311372 1636057026 37.24 0.85
8 Undetermined 1 42133849365 33523407983 1489981554596 35.36 0.80
8 Undetermined 2 42133849365 32164559740 1444109461084 34.27 0.76
99 rows