File Info
- Filename
- Adapter_Metrics.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L008/Reports/Adapter_Metrics.csv
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- 7.8 KB
- Workflow Run
- dev_rna_exp0008_exp0011_73d51683
- Published
- Jun 07, 2026 11:46 PM
Content
View in new tab| Lane | Sample_ID | index | index2 | ReadNumber | AdapterBases | SampleBases | % Adapter Bases |
| 8 | LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 | CAACCATACA | ACCGGTTATA | 1 | 0 | 31522800317 | 0.000 |
| 8 | LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 | CAACCATACA | ACCGGTTATA | 2 | 0 | 31522800317 | 0.000 |
| 8 | LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTAGGCCGTT | GCCACTGTCT | 1 | 0 | 6769297082 | 0.000 |
| 8 | LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTAGGCCGTT | GCCACTGTCT | 2 | 0 | 6769297082 | 0.000 |
| 8 | LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CGGATTGATC | AGTCACAACA | 1 | 0 | 23547649398 | 0.000 |
| 8 | LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CGGATTGATC | AGTCACAACA | 2 | 0 | 23547649398 | 0.000 |
| 8 | BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 | ACTGGCAAGA | TGTTGTCCAT | 1 | 0 | 1997387683 | 0.000 |
| 8 | BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 | ACTGGCAAGA | TGTTGTCCAT | 2 | 0 | 1997387683 | 0.000 |
| 8 | BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACAAGAACCT | CGATACTGAA | 1 | 0 | 2129082182 | 0.000 |
| 8 | BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACAAGAACCT | CGATACTGAA | 2 | 0 | 2129082182 | 0.000 |
| 8 | BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 | AGAGTATGTG | AGATGGCTTC | 1 | 0 | 3056292246 | 0.000 |
| 8 | BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 | AGAGTATGTG | AGATGGCTTC | 2 | 0 | 3056292246 | 0.000 |
| 8 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 | ACTTAGATCG | CGGAATTCTT | 1 | 0 | 10348204405 | 0.000 |
| 8 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 | ACTTAGATCG | CGGAATTCTT | 2 | 0 | 10348204405 | 0.000 |
| 8 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 | GATCAACAAG | AAGCACTGTC | 1 | 0 | 5010461162 | 0.000 |
| 8 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 | GATCAACAAG | AAGCACTGTC | 2 | 0 | 5010461162 | 0.000 |
| 8 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 | ACCTTCGGAC | GACCGTAGAT | 1 | 0 | 620441031 | 0.000 |
| 8 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 | ACCTTCGGAC | GACCGTAGAT | 2 | 0 | 620441031 | 0.000 |
| 8 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 | TATCATGTCG | TAATCTGCAC | 1 | 0 | 4365877496 | 0.000 |
| 8 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 | TATCATGTCG | TAATCTGCAC | 2 | 0 | 4365877496 | 0.000 |
| 8 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 | CGTCTAGTAA | TTAATCCAGC | 1 | 0 | 3352399169 | 0.000 |
| 8 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 | CGTCTAGTAA | TTAATCCAGC | 2 | 0 | 3352399169 | 0.000 |
| 8 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 | TCTTAGGTGG | GATCACTGGT | 1 | 0 | 7384160173 | 0.000 |
| 8 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 | TCTTAGGTGG | GATCACTGGT | 2 | 0 | 7384160173 | 0.000 |
| 8 | HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TCGACGTTGG | GATAAGTGTG | 1 | 0 | 2786831991 | 0.000 |
| 8 | HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TCGACGTTGG | GATAAGTGTG | 2 | 0 | 2786831991 | 0.000 |
| 8 | HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AAGAGTACGA | GCAAGGACGT | 1 | 0 | 21216632198 | 0.000 |
| 8 | HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AAGAGTACGA | GCAAGGACGT | 2 | 0 | 21216632198 | 0.000 |
| 8 | ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CACGAGAAGT | GTCTGCGTAG | 1 | 0 | 1499515919 | 0.000 |
| 8 | ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CACGAGAAGT | GTCTGCGTAG | 2 | 0 | 1499515919 | 0.000 |
| 8 | ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 | GACAATTAGC | CCGGTCATGA | 1 | 0 | 1757499268 | 0.000 |
| 8 | ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 | GACAATTAGC | CCGGTCATGA | 2 | 0 | 1757499268 | 0.000 |
| 8 | BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 | TTCTACCGGC | TACTCGTAAG | 1 | 0 | 1586542957 | 0.000 |
| 8 | BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 | TTCTACCGGC | TACTCGTAAG | 2 | 0 | 1586542957 | 0.000 |
| 8 | SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTGAGAGTAT | ATCTGTGAGG | 1 | 0 | 3120490651 | 0.000 |
| 8 | SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTGAGAGTAT | ATCTGTGAGG | 2 | 0 | 3120490651 | 0.000 |
| 8 | SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 | CTGGAGAATA | TCCATACAAC | 1 | 0 | 8346828661 | 0.000 |
| 8 | SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 | CTGGAGAATA | TCCATACAAC | 2 | 0 | 8346828661 | 0.000 |
| 8 | EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TGACAAGAGG | AATCTGTTGG | 1 | 0 | 4258469837 | 0.000 |
| 8 | EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TGACAAGAGG | AATCTGTTGG | 2 | 0 | 4258469837 | 0.000 |
| 8 | EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TGTTCGCTCT | ACTTGCGTGT | 1 | 0 | 1571511058 | 0.000 |
| 8 | EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TGTTCGCTCT | ACTTGCGTGT | 2 | 0 | 1571511058 | 0.000 |
| 8 | OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AGGTATTCGG | AGATGTGCGC | 1 | 0 | 19088551146 | 0.000 |
| 8 | OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AGGTATTCGG | AGATGTGCGC | 2 | 0 | 19088551146 | 0.000 |
| 8 | HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 | ACGGCCTACA | TCTCACTCTA | 1 | 0 | 2201866296 | 0.000 |
| 8 | HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 | ACGGCCTACA | TCTCACTCTA | 2 | 0 | 2201866296 | 0.000 |
| 8 | HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 | CACGTAAGAG | TCAATCCGCG | 1 | 0 | 5618894069 | 0.000 |
| 8 | HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 | CACGTAAGAG | TCAATCCGCG | 2 | 0 | 5618894069 | 0.000 |
| 8 | ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | AATCGAACTC | ACGAACCTTA | 1 | 0 | 713589760 | 0.000 |
| 8 | ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | AATCGAACTC | ACGAACCTTA | 2 | 0 | 713589760 | 0.000 |
| 8 | ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AGGCTGGAGA | CAACTGTCAT | 1 | 0 | 4384094136 | 0.000 |
| 8 | ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AGGCTGGAGA | CAACTGTCAT | 2 | 0 | 4384094136 | 0.000 |
| 8 | BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 | TAAGCCACGC | TTACGAACGA | 1 | 0 | 1446840626 | 0.000 |
| 8 | BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 | TAAGCCACGC | TTACGAACGA | 2 | 0 | 1446840626 | 0.000 |
| 8 | SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TCAATCAGAG | GACTCTGGTT | 1 | 0 | 2803902843 | 0.000 |
| 8 | SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TCAATCAGAG | GACTCTGGTT | 2 | 0 | 2803902843 | 0.000 |
| 8 | SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AACATAAGGC | GTTAGCTTAG | 1 | 0 | 14170610553 | 0.000 |
| 8 | SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AACATAAGGC | GTTAGCTTAG | 2 | 0 | 14170610553 | 0.000 |
| 8 | SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 | TTGCAATGCG | CGAGACTTCA | 1 | 0 | 18482838655 | 0.000 |
| 8 | SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 | TTGCAATGCG | CGAGACTTCA | 2 | 0 | 18482838655 | 0.000 |
| 8 | EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | AACCGGCCTT | TGTTCAGATC | 1 | 0 | 24314550614 | 0.000 |
| 8 | EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | AACCGGCCTT | TGTTCAGATC | 2 | 0 | 24314550614 | 0.000 |
| 8 | EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 | CATTATCGCT | CGAGTTGCTT | 1 | 0 | 19401667162 | 0.000 |
| 8 | EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 | CATTATCGCT | CGAGTTGCTT | 2 | 0 | 19401667162 | 0.000 |
| 8 | EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 | CATTGAGCTA | ACTTCACATC | 1 | 0 | 1174944439 | 0.000 |
| 8 | EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 | CATTGAGCTA | ACTTCACATC | 2 | 0 | 1174944439 | 0.000 |
| 8 | EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | CTTCGGAATC | CGTCGGTAAG | 1 | 0 | 8263370206 | 0.000 |
| 8 | EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | CTTCGGAATC | CGTCGGTAAG | 2 | 0 | 8263370206 | 0.000 |
| 8 | EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 | AACCACACTA | CCTCTGCTGA | 1 | 0 | 26267750865 | 0.000 |
| 8 | EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 | AACCACACTA | CCTCTGCTGA | 2 | 0 | 26267750865 | 0.000 |
| 8 | OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 | GTACAGCGGA | CAATCTGTGT | 1 | 0 | 625917046 | 0.000 |
| 8 | OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 | GTACAGCGGA | CAATCTGTGT | 2 | 0 | 625917046 | 0.000 |
| 8 | OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACTTCAACAG | GCGTGAGCAT | 1 | 0 | 671541998 | 0.000 |
| 8 | OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACTTCAACAG | GCGTGAGCAT | 2 | 0 | 671541998 | 0.000 |
| 8 | OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 | TGGACAATAG | GAGTCCTGTG | 1 | 0 | 1826948245 | 0.000 |
| 8 | OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 | TGGACAATAG | GAGTCCTGTG | 2 | 0 | 1826948245 | 0.000 |
| 8 | HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCACACGGAT | CTTCTGATCG | 1 | 0 | 5006685860 | 0.000 |
| 8 | HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCACACGGAT | CTTCTGATCG | 2 | 0 | 5006685860 | 0.000 |
| 8 | HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 | AGGATACGGT | AACCACGTCA | 1 | 0 | 4009650829 | 0.000 |
| 8 | HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 | AGGATACGGT | AACCACGTCA | 2 | 0 | 4009650829 | 0.000 |
| 8 | HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 | GCTACAGGTC | TTATGCAGGA | 1 | 0 | 875363308 | 0.000 |
| 8 | HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 | GCTACAGGTC | TTATGCAGGA | 2 | 0 | 875363308 | 0.000 |
| 8 | HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GCCAAGTAAC | TGCGTGATGA | 1 | 0 | 2761213180 | 0.000 |
| 8 | HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GCCAAGTAAC | TGCGTGATGA | 2 | 0 | 2761213180 | 0.000 |
| 8 | OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 | TTGTGAAGGC | TCGTCAGTAC | 1 | 0 | 36406005474 | 0.000 |
| 8 | OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 | TTGTGAAGGC | TCGTCAGTAC | 2 | 0 | 36406005474 | 0.000 |
| 8 | OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTCGACTCCT | TGCCGTTAGC | 1 | 0 | 31149986451 | 0.000 |
| 8 | OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTCGACTCCT | TGCCGTTAGC | 2 | 0 | 31149986451 | 0.000 |
| 8 | OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 | CTGAGCTTGT | CTTCTTGCGT | 1 | 0 | 37344320682 | 0.000 |
| 8 | OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 | CTGAGCTTGT | CTTCTTGCGT | 2 | 0 | 37344320682 | 0.000 |
| 8 | FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | CCTCTGTCAT | CGTATCGATT | 1 | 0 | 92279156089 | 0.000 |
| 8 | FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | CCTCTGTCAT | CGTATCGATT | 2 | 0 | 92279156089 | 0.000 |
| 8 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 | GCAGATGTAA | TACACGCCTC | 1 | 0 | 73806075809 | 0.000 |
| 8 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 | GCAGATGTAA | TACACGCCTC | 2 | 0 | 73806075809 | 0.000 |
| 8 | NTC_0001_0001_B23LG7FLT4_2 | CTCATCATCT | TAAGCCTCTA | 1 | 0 | 43933903 | 0.000 |
| 8 | NTC_0001_0001_B23LG7FLT4_2 | CTCATCATCT | TAAGCCTCTA | 2 | 0 | 43933903 | 0.000 |
| 8 | Undetermined | 1 | 0 | 42133849365 | 0.000 | ||
| 8 | Undetermined | 2 | 0 | 42133849365 | 0.000 |
99 rows