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Filename
A673_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/fusioninspector/A673_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv
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11.6 KB
Workflow Run
dev_rna_exp0008_exp0011_73d51683
Published
Jun 08, 2026 4:50 AM

Content

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
EWSR1--FLI1 5840 10 5840.00 9.96 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 37165 chr11:128805366:+ ONLY_REF_SPLICE YES 3589 160 1.63 36.34 GT 1.8062 AG 1.7819 19.8434 1466 0
EWSR1--FLI1 58 0 58.00 0.00 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 40039 chr11:128809157:+ ONLY_REF_SPLICE YES 3589 1696 0.02 0.03 GT 1.8062 AG 1.9329 0.1967 1609 0
EWSR1--FLI1 46 1 46.00 0.01 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 38979 chr11:128807180:+ ONLY_REF_SPLICE YES 3589 961 0.01 0.05 GT 1.8062 AG 1.8062 0.156 1231 0
EWSR1--FLI1 7 10 7.00 0.01 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 35687 chr11:128803888:+ INCL_NON_REF_SPLICE YES 3589 2 0.01 6.00 GT 1.8062 AG 1.8892 0.0237 1464 0
EWSR1--FLI1 3 10 3.00 0.01 EWSR1^ENSG00000182944.18 11550 chr22:29287130:+ FLI1^ENSG00000151702.17 37164 chr11:128805365:+ INCL_NON_REF_SPLICE YES 3820 157 0.00 0.09 CA 1.8062 TA 1.9086 0.0102 1469 0
EWSR1--FLI1 3 10 3.00 0.01 EWSR1^ENSG00000182944.18 16555 chr22:29292606:+ FLI1^ENSG00000151702.17 33527 chr11:128772904:+ INCL_NON_REF_SPLICE NO 4853 6 0.00 2.00 GT 1.4295 AA 1.6895 0.0102 1475 0
EWSR1--FLI1 3 10 3.00 0.01 EWSR1^ENSG00000182944.18 11553 chr22:29287133:+ FLI1^ENSG00000151702.17 29727 chr11:128758219:+ INCL_NON_REF_SPLICE NO 3695 3 0.00 3.50 AG 1.8062 GA 1.7465 0.0102 3 2
EWSR1--FLI1 3 0 3.00 0.00 EWSR1^ENSG00000182944.18 11508 chr22:29287088:+ FLI1^ENSG00000151702.17 41087 chr11:128810459:+ INCL_NON_REF_SPLICE YES 4584 1897 0.00 0.00 GC 1.9086 AG 1.8062 0.0102 1668 0
EWSR1--FLI1 1 0 1.00 0.00 EWSR1^ENSG00000182944.18 10342 chr22:29282557:+ FLI1^ENSG00000151702.17 37165 chr11:128805366:+ ONLY_REF_SPLICE YES 4099 160 0.00 0.01 GT 1.6729 AG 1.7819 0.0034 697 0
EWSR1--FLI1 1 0 1.00 0.00 EWSR1^ENSG00000182944.18 9174 chr22:29278216:+ FLI1^ENSG00000151702.17 37165 chr11:128805366:+ ONLY_REF_SPLICE YES 3470 160 0.00 0.01 GT 1.8323 AG 1.7819 0.0034 1110 0
RBM14--RBM4 587 7 587.00 6.37 RBM14^ENSG00000239306.5 1432 chr11:66617057:+ RBM4^ENSG00000173933.21 16040 chr11:66639700:+ ONLY_REF_SPLICE YES 1161 987 0.51 0.60 GT 1.7465 AG 1.9086 2.0127 80 1
RBM14--RBM4 69 4 69.00 0.40 RBM14^ENSG00000239306.5 1432 chr11:66617057:+ RBM4^ENSG00000173933.21 20827 chr11:66646027:+ ONLY_REF_SPLICE YES 1161 1606 0.06 0.05 GT 1.7465 AG 1.2310 0.2355 156 0
RBM14--RBM4 7 7 7.00 0.08 RBM14^ENSG00000239306.5 1432 chr11:66617057:+ RBM4^ENSG00000173933.21 16018 chr11:66639678:+ INCL_NON_REF_SPLICE YES 1161 884 0.01 0.02 GT 1.7465 AG 1.4256 0.024 100 0
RBM14--RBM4 5 7 5.00 0.05 RBM14^ENSG00000239306.5 7750 chr11:66625678:+ RBM4^ENSG00000173933.21 16040 chr11:66639700:+ ONLY_REF_SPLICE YES 727 987 0.02 0.01 GT 1.9329 AG 1.9086 0.0172 1067 0
RBM14--RBM4 4 4 4.00 0.02 RBM14^ENSG00000239306.5 1432 chr11:66617057:+ RBM4^ENSG00000173933.21 18533 chr11:66643450:+ ONLY_REF_SPLICE YES 1161 1985 0.01 0.00 GT 1.7465 AG 1.8062 0.0137 648 0
RBM14--RBM4 3 7 3.00 0.03 RBM14^ENSG00000239306.5 6396 chr11:66624324:+ RBM4^ENSG00000173933.21 16040 chr11:66639700:+ ONLY_REF_SPLICE YES 1397 987 0.01 0.01 GT 1.8323 AG 1.9086 0.0103 202 0
RBM14--RBM4 3 5 3.00 0.02 RBM14^ENSG00000239306.5 1433 chr11:66617058:+ RBM4^ENSG00000173933.21 16043 chr11:66639703:+ INCL_NON_REF_SPLICE YES 1143 1015 0.01 0.01 TA 1.7465 CT 1.8323 0.0103 77 1
RBM14--RBM4 1 7 1.00 0.01 RBM14^ENSG00000239306.5 1925 chr11:66617550:+ RBM4^ENSG00000173933.21 16040 chr11:66639700:+ ONLY_REF_SPLICE YES 988 987 0.01 0.01 GT 1.8892 AG 1.9086 0.0034 534 0
RBM14--RBM4 1 4 1.00 0.01 RBM14^ENSG00000239306.5 1432 chr11:66617057:+ RBM4^ENSG00000173933.21 18942 chr11:66643859:+ ONLY_REF_SPLICE YES 1161 1753 0.01 0.00 GT 1.7465 AG 1.9219 0.0034 255 0
RBM14--RBM4 1 4 1.00 0.01 RBM14^ENSG00000239306.5 7750 chr11:66625678:+ RBM4^ENSG00000173933.21 20827 chr11:66646027:+ ONLY_REF_SPLICE YES 727 1606 0.01 0.00 GT 1.9329 AG 1.2310 0.0034 401 0
RBM14--RBM4 1 0 1.00 0.00 RBM14^ENSG00000239306.5 7750 chr11:66625678:+ RBM4^ENSG00000173933.21 22269 chr11:66649736:+ ONLY_REF_SPLICE YES 727 433 0.00 0.00 GT 1.9329 AG 1.8892 0.0034 1284 0
PCDHA6--PCDHAC2 448 3 423.83 2.84 PCDHA6^ENSG00000081842.18 3528 chr5:140830485:+ PCDHAC2^ENSG00000243232.6 11279 chr5:140978949:+ INCL_NON_REF_SPLICE YES 109 332 4.11 1.36 GT 1.9219 AG 1.3996 1.4473 1069 0
PCDHA6--PCDHAC2 11 0 5.50 0.00 PCDHA6^ENSG00000081842.18 2736 chr5:140829693:+ PCDHAC2^ENSG00000243232.6 11279 chr5:140978949:+ INCL_NON_REF_SPLICE YES 570 332 0.02 0.04 GT 1.9329 AG 1.3996 0.0187 1106 0
PCDHA6--PCDHAC1 447 3 24.17 0.16 PCDHA6^ENSG00000081842.18 3528 chr5:140830485:+ PCDHAC1^ENSG00000248383.5 12415 chr5:140978949:+ INCL_NON_REF_SPLICE YES 109 112 4.10 3.99 GT 1.9219 AG 1.3996 0.0825 1175 0
PCDHA6--PCDHAC1 11 0 5.50 0.00 PCDHA6^ENSG00000081842.18 2736 chr5:140829693:+ PCDHAC1^ENSG00000248383.5 12415 chr5:140978949:+ INCL_NON_REF_SPLICE YES 570 112 0.02 0.11 GT 1.9329 AG 1.3996 0.0187 1433 0
SMURF2P1--SP2 403 2 403.00 1.97 SMURF2P1^ENSG00000248121.8 4220 chr17:30610942:+ SP2^ENSG00000167182.15 13324 chr17:47915312:+ ONLY_REF_SPLICE YES 0 288 406.00 1.40 GT 1.7819 AG 1.7056 1.3737 2882 0
SMURF2P1--SP2 3 0 3.00 0.00 SMURF2P1^ENSG00000248121.8 1121 chr17:30600916:+ SP2^ENSG00000167182.15 13324 chr17:47915312:+ ONLY_REF_SPLICE YES 36 288 0.11 0.01 GT 1.7819 AG 1.7056 0.0102 1468 0
SMURF2P1--SP2 2 3 2.00 0.51 SMURF2P1^ENSG00000248121.8 4220 chr17:30610942:+ SP2^ENSG00000167182.15 11671 chr17:47909664:+ ONLY_REF_SPLICE YES 0 181 6.00 0.03 GT 1.7819 AG 1.6895 0.0085 4099 0
SMURF2P1--SP2 2 3 2.00 0.51 SMURF2P1^ENSG00000248121.8 4220 chr17:30610942:+ SP2^ENSG00000167182.15 12738 chr17:47914726:+ ONLY_REF_SPLICE YES 0 191 6.00 0.03 GT 1.7819 AG 1.7819 0.0085 3270 0
SMURF2P1--SP2 2 2 2.00 0.01 SMURF2P1^ENSG00000248121.8 5305 chr17:30615980:+ SP2^ENSG00000167182.15 13324 chr17:47915312:+ ONLY_REF_SPLICE YES 0 288 5.00 0.02 GT 1.8892 AG 1.7056 0.0068 3802 0
SMURF2P1--SP2 2 0 2.00 0.00 SMURF2P1^ENSG00000248121.8 4220 chr17:30610942:+ SP2^ENSG00000167182.15 16869 chr17:47922962:+ ONLY_REF_SPLICE YES 0 297 3.00 0.01 GT 1.7819 AG 1.9219 0.0068 2910 0
PCDHGB2--PCDHGA10 200 0 25.00 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA10^ENSG00000253846.2 12051 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 5 201.00 33.50 GT 1.7819 AG 1.3383 0.0848 1890 0
PCDHGB2--PCDHGA11 200 0 25.00 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA11^ENSG00000253873.6 11222 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 635 201.00 0.32 GT 1.7819 AG 1.3383 0.0848 1018 0
PCDHGB2--PCDHGA12 200 0 25.00 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA12^ENSG00000253159.3 10305 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 2 201.00 67.00 GT 1.7819 AG 1.3383 0.0848 1413 0
PCDHGB2--PCDHGA8 200 0 25.00 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA8^ENSG00000253767.3 14069 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 15 201.00 12.56 GT 1.7819 AG 1.3383 0.0848 1419 0
PCDHGB2--PCDHGA9 200 0 25.00 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA9^ENSG00000261934.2 10157 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 11 201.00 16.75 GT 1.7819 AG 1.3383 0.0848 1493 0
PCDHGB2--PCDHGC3 200 0 25.00 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC3^ENSG00000240184.7 10438 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 936 201.00 0.21 GT 1.7819 AG 1.3383 0.0848 1210 0
PCDHGB2--PCDHGC4 200 0 25.00 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC4^ENSG00000242419.5 10382 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 6 201.00 28.71 GT 1.7819 AG 1.3383 0.0848 1585 0
PCDHGB2--PCDHGC5 200 0 25.00 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC5^ENSG00000240764.4 10438 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 31 201.00 6.28 GT 1.7819 AG 1.3383 0.0848 1206 0
SUPT20H--CHRDL2 70 0 70.00 0.00 SUPT20H^ENSG00000102710.20 1155 chr13:37059559:- CHRDL2^ENSG00000054938.16 46703 chr11:74697297:- ONLY_REF_SPLICE YES 579 35 0.12 1.97 GT 1.5656 AG 1.9329 0.2374 5352 0
SUPT20H--CHRDL2 25 0 25.00 0.00 SUPT20H^ENSG00000102710.20 1234 chr13:37059480:- CHRDL2^ENSG00000054938.16 46703 chr11:74697297:- ONLY_REF_SPLICE YES 624 35 0.04 0.72 GT 1.7465 AG 1.9329 0.0848 5278 0
CCDC169--SOHLH2 69 0 69.00 0.00 CCDC169^ENSG00000242715.8 10007 chr13:36248606:- SOHLH2^ENSG00000120669.16 24280 chr13:36202093:- ONLY_REF_SPLICE YES 65 1 1.06 35.00 GT 1.8295 AG 1.7232 0.2341 1362 0
CCDC169--SOHLH2 1 0 1.00 0.00 CCDC169^ENSG00000242715.8 12277 chr13:36240570:- SOHLH2^ENSG00000120669.16 24280 chr13:36202093:- ONLY_REF_SPLICE YES 48 1 0.04 1.00 GT 1.9329 AG 1.7232 0.0034 2711 0
CCDC169--SOHLH2 1 0 1.00 0.00 CCDC169^ENSG00000242715.8 3518 chr13:36283469:- SOHLH2^ENSG00000120669.16 24280 chr13:36202093:- ONLY_REF_SPLICE YES 114 1 0.02 1.00 GT 1.9086 AG 1.7232 0.0034 1270 0
CYP7B1--LINC01414 65 0 65.00 0.00 CYP7B1^ENSG00000172817.4 1272 chr8:64798466:- LINC01414^ENSG00000253554.7 33162 chr8:63687231:- ONLY_REF_SPLICE YES 202 0 0.33 66.00 GT 1.8323 AG 1.6895 0.2205 5396 0
TLK2--AC240565.1 55 0 49.20 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 453 28 0.12 1.93 GT 1.8892 AG 1.8892 0.1669 1734 0
TLK2--AC240565.1 1 0 1.00 0.00 TLK2^ENSG00000146872.18 14714 chr17:62552397:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 626 28 0.00 0.07 GT 1.5219 AG 1.8892 0.0034 1594 0
NPM1--MT-RNR2 49 0 49.00 0.00 NPM1^ENSG00000181163.14 5684 chr5:171391799:+ MT-RNR2^ENSG00000210082.2 18922 chrM:1959:+ INCL_NON_REF_SPLICE YES 11550 2 0.00 16.67 GT 1.9656 AG 1.6895 0.1662 186 0
TLK2P1--AC110079.1 43 0 34.80 0.00 TLK2P1^ENSG00000226049.3 1830 chr17:34039043:- AC110079.1^ENSG00000260404.3 8316 chr4:118595912:+ INCL_NON_REF_SPLICE YES 32 47 1.33 0.92 GT 1.7465 AG 1.8892 0.118 311 0
SOGA3--KIAA0408 30 2 30.00 2.00 SOGA3^ENSG00000214338.10 11088 chr6:127473080:- KIAA0408^ENSG00000189367.15 15731 chr6:127454101:- INCL_NON_REF_SPLICE YES 0 31 33.00 1.03 GT 1.6895 AG 1.7465 0.1086 176 0
SOGA3--KIAA0408 2 0 2.00 0.00 SOGA3^ENSG00000214338.10 9776 chr6:127475293:- KIAA0408^ENSG00000189367.15 19482 chr6:127447740:- ONLY_REF_SPLICE YES 474 901 0.01 0.00 GT 1.9656 AG 1.9329 0.0068 575 0
SOGA3--KIAA0408 2 0 2.00 0.00 SOGA3^ENSG00000214338.10 9776 chr6:127475293:- KIAA0408^ENSG00000189367.15 21815 chr6:127444282:- ONLY_REF_SPLICE YES 474 751 0.01 0.00 GT 1.9656 AG 1.9899 0.0068 304 0
SOGA3--KIAA0408 1 0 1.00 0.00 SOGA3^ENSG00000214338.10 9767 chr6:127475302:- KIAA0408^ENSG00000189367.15 19482 chr6:127447740:- ONLY_REF_SPLICE YES 508 901 0.00 0.00 GT 1.9656 AG 1.9329 0.0034 573 0
LINC00221--SPG7 19 0 19.00 0.00 LINC00221^ENSG00000270816.6 11167 chr14:106506447:+ SPG7^ENSG00000197912.16 35087 chr16:89526329:+ ONLY_REF_SPLICE YES 0 458 20.00 0.04 GT 1.5219 AG 1.9329 0.0644 1167 0
LINC00221--SPG7 4 0 4.00 0.00 LINC00221^ENSG00000270816.6 11167 chr14:106506447:+ SPG7^ENSG00000197912.16 37984 chr16:89529477:+ ONLY_REF_SPLICE YES 0 398 5.00 0.01 GT 1.5219 AG 1.7819 0.0136 1647 0
LINC00221--SPG7 2 0 2.00 0.00 LINC00221^ENSG00000270816.6 11167 chr14:106506447:+ SPG7^ENSG00000197912.16 39190 chr16:89530683:+ ONLY_REF_SPLICE YES 0 308 3.00 0.01 GT 1.5219 AG 1.7968 0.0068 1170 0
SELENOOLP--HOOK1 9 0 9.00 0.00 SELENOOLP^ENSG00000227932.2 9888 chr10:26668407:- HOOK1^ENSG00000134709.12 25207 chr1:59847045:+ ONLY_REF_SPLICE YES 24 1771 0.40 0.01 GT 1.7819 AG 1.9656 0.0305 1491 0
IGH-@-ext--SPG7 3 0 3.00 0.00 IGH-@-ext^IGH-.g@-ext 1292288 chr14:106875018:+ SPG7^ENSG00000197912.16 1314799 chr16:89526329:+ INCL_NON_REF_SPLICE YES 0 464 4.00 0.01 GT 1.9656 AG 1.9329 0.0102 879 0
59 rows