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Filename
FFPE_V4_0001_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/fusioninspector/FFPE_V4_0001_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv
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8.4 KB
Workflow Run
dev_rna_exp0008_exp0011_73d51683
Published
Jun 08, 2026 5:34 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 4472 9 4472.00 8.99 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 85 2330 52.12 1.92 GT 1.8892 AG 1.7819 15.1353 627 0
FGFR3--TACC3 5 8 5.00 0.01 FGFR3^ENSG00000068078.20 9874 chr4:1806930:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 117 2296 0.12 0.01 CG 1.9219 AG 1.7819 0.0169 632 0
TMPRSS2--ERG 4312 0 4312.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 0 53 4313.00 79.87 GT 1.6895 AG 1.9219 14.5645 1104 0
TPM3--NTRK1 1434 9 1434.00 9.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 7006 35 0.21 40.11 GT 1.9329 AG 1.6895 4.874 355 0
LMNA--NTRK1 1354 7 1354.00 7.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 3880 255 0.35 5.32 GT 1.7465 AG 1.5058 4.597 947 0
FGFR3--BAIAP2L1 1290 3 1290.00 3.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 87 51 14.70 24.88 GT 1.8892 AG 1.8062 4.3673 1171 0
ETV6--NTRK3 1286 8 1286.00 7.97 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 2453 15 0.53 80.94 GT 1.7819 AG 1.9656 4.3706 1252 0
ETV6--NTRK3 5 8 5.00 0.03 ETV6^ENSG00000139083.11 11235 chr12:11869967:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- INCL_NON_REF_SPLICE NO 2516 15 0.01 0.88 AG 1.9086 AG 1.9656 0.017 1252 0
NCOA4--RET 1052 4 1052.00 4.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 2523 459 0.42 2.30 GT 1.9086 AG 1.8323 3.5668 5144 0
CD74--ROS1 819 4 819.00 3.87 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 23190 24 0.04 32.96 GT 1.7819 AG 1.7465 2.7794 2407 0
CD74--ROS1 12 4 12.00 0.06 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 23189 27 0.00 0.61 AC 1.9329 GA 1.8295 0.0407 2408 0
CD74--ROS1 5 2 5.00 0.01 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48779 chr6:117324367:- INCL_NON_REF_SPLICE YES 24463 220 0.00 0.04 GG 1.7819 TG 1.7465 0.0169 2384 0
CD74--ROS1 4 4 4.00 0.02 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48733 chr6:117324413:- INCL_NON_REF_SPLICE YES 24463 34 0.00 0.26 GG 1.7819 AT 1.8892 0.0136 2405 0
CD74--ROS1 4 4 4.00 0.02 CD74^ENSG00000019582.16 4987 chr5:150404683:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE NO 24786 0 0.00 9.00 AA 1.8295 TT 1.5301 0.0136 2405 0
CD74--ROS1 5 0 5.00 0.00 CD74^ENSG00000019582.16 4561 chr5:150405109:- ROS1^ENSG00000047936.11 49873 chr6:117321336:- INCL_NON_REF_SPLICE YES 21481 668 0.00 0.01 AC 1.7968 AT 1.2419 0.0169 1374 0
CD74--ROS1 4 4 4.00 0.02 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 12651 chr6:117425921:- INCL_NON_REF_SPLICE NO 24463 0 0.00 9.00 GG 1.7819 TT 1.9656 0.0136 3299 0
CD74--ROS1 4 1 4.00 0.00 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 49869 chr6:117321340:- INCL_NON_REF_SPLICE YES 23190 652 0.00 0.01 GT 1.7819 GC 1.7232 0.0135 1651 0
CCDC6--RET 819 2 819.00 2.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 1736 459 0.47 1.79 GT 1.8892 AG 1.8323 2.7731 2092 0
KIF5B--RET 751 8 751.00 7.97 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1388 15 0.55 47.50 GT 1.9656 AG 1.9656 2.5635 3178 0
KIF5B--RET 3 8 3.00 0.03 KIF5B^ENSG00000170759.11 19979 chr10:32017141:- RET^ENSG00000165731.20 38836 chr10:43114484:+ INCL_NON_REF_SPLICE YES 1387 20 0.01 0.57 TA 1.9656 CC 1.9656 0.0102 3175 0
EML4--ALK 622 0 622.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 551 42 1.13 14.49 GT 1.6895 AG 1.9086 2.1009 1550 0
PAX8--PPARG 591 0 591.00 0.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 82 10 7.13 53.82 GT 1.8295 AG 1.9329 1.9962 1923 0
PAX8--PPARG 6 0 6.00 0.00 PAX8^ENSG00000125618.18 9704 chr2:113235404:- PPARG^ENSG00000132170.23 31395 chr3:12379695:+ INCL_NON_REF_SPLICE YES 107 4 0.06 1.40 CT 1.8323 TT 1.9086 0.0203 1933 0
PAX8--PPARG 3 0 3.00 0.00 PAX8^ENSG00000125618.18 9705 chr2:113235403:- PPARG^ENSG00000132170.23 31428 chr3:12379728:+ INCL_NON_REF_SPLICE YES 105 20 0.04 0.19 TC 1.6895 GA 1.8892 0.0101 1932 0
SLC45A3--BRAF 536 0 536.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 1150 537.00 0.47 GT 1.5628 AG 1.7465 1.8104 2599 0
SLC34A2--ROS1 519 22 519.00 22.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 25 542.00 20.85 GT 1.8892 AG 1.7465 1.8273 999 0
SLC34A2--ROS1 3 0 3.00 0.00 SLC34A2^ENSG00000157765.13 4945 chr4:25662832:+ ROS1^ENSG00000047936.11 60323 chr6:117319952:- INCL_NON_REF_SPLICE YES 636 1472 0.01 0.00 AA 1.8892 GG 1.8892 0.0101 1148 0
SLC34A2--ROS1 3 0 3.00 0.00 SLC34A2^ENSG00000157765.13 4883 chr4:25662770:+ ROS1^ENSG00000047936.11 59164 chr6:117321339:- INCL_NON_REF_SPLICE YES 683 666 0.01 0.01 TA 1.8892 CT 1.6049 0.0101 2274 0
EGFR--SEPTIN14 417 1 417.00 1.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 7 26 52.38 15.52 GT 1.8892 AG 1.9899 1.4119 658 0
TFG--NTRK1 414 2 414.00 2.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 1734 35 0.24 11.58 GT 1.9329 AG 1.6895 1.4052 883 0
STX16--NPEPL1 141 1 141.00 1.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 825 93 0.17 1.52 GT 1.7968 AG 1.8256 0.4797 1940 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 19290 chr20:58693737:+ ONLY_REF_SPLICE YES 825 899 0.00 0.00 GT 1.7968 AG 1.7819 0.0034 1248 0
TLK2--AC240565.1 55 0 50.17 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 465 15 0.12 3.50 GT 1.8892 AG 1.8892 0.1695 1734 0
TVP23C--CDRT4 45 0 45.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 96 4 0.47 9.20 GT 1.9329 AG 1.9899 0.152 1215 0
TVP23C--CDRT4 19 0 19.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 429 4 0.05 4.00 GT 1.8323 AG 1.9899 0.0642 2126 0
TVP23C--CDRT4 11 0 11.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 27 4 0.43 2.40 GT 1.8892 AG 1.9899 0.0372 1949 0
TVP23C--CDRT4 9 0 9.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 96 21 0.10 0.45 GT 1.9329 AG 1.6402 0.0304 137 0
TVP23C--CDRT4 6 0 6.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 429 21 0.02 0.32 GT 1.8323 AG 1.6402 0.0203 1363 0
TVP23C--CDRT4 2 0 2.00 0.00 TVP23C^ENSG00000175106.17 6853 chr17:15545785:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 253 4 0.01 0.60 GT 1.9086 AG 1.9899 0.0068 1774 0
TVP23C--CDRT4 1 0 1.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 27 21 0.07 0.09 GT 1.8892 AG 1.6402 0.0034 873 0
TLK2P1--AC110079.1 34 0 23.83 0.00 TLK2P1^ENSG00000226049.3 1830 chr17:34039043:- AC110079.1^ENSG00000260404.3 8316 chr4:118595912:+ INCL_NON_REF_SPLICE YES 60 83 0.57 0.42 GT 1.7465 AG 1.8892 0.0805 311 0
SOGA3--KIAA0408 13 0 13.00 0.00 SOGA3^ENSG00000214338.10 11088 chr6:127473080:- KIAA0408^ENSG00000189367.15 15731 chr6:127454101:- INCL_NON_REF_SPLICE YES 0 11 14.00 1.17 GT 1.6895 AG 1.7465 0.0439 176 0
43 rows