File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp0008_exp0011_73d51683
- Published
- Jun 08, 2026 6:33 AM
Content
View in new tab| sample_id | AFTER_FILTERING_Q30_RATE | CONTAMINATION_PCT | FRAC_ANTISENSE | FRAC_UNMAPPED | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | IS_CONTAMINATED | N_Q30 | PERCENT_DUPLICATION | PCT_MITO_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE | UNIQUE_READS_RSEQC | UNIQUELY_MAPPED_PERCENT | GC_BIAS | PCT_ADAPTER | PCT_DUPLICATION | PCT_HK_EST_COUNTS | PCT_HK_TPM | PCT_MALE_EST_COUNTS | PCT_MALE_TPM | PCT_RIBO_EST_COUNTS | RIBOSOMAL_CONTAMINATION | PCT_SURVIVING | PERCENT_GC | READS | MAPPED_READS | AVG_SEQUENCE_LENGTH | PERCENT_DUPLICATES | PERCENT_FAILS | TOTAL_SEQUENCES | FRAC_BASES_GT30X | FRAC_READS_OFF_TARGET | FRAC_READS_ON_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT100X | FRAC_PAIRS_OFF_TARGET | FRAC_PAIRS_ON_TARGET | PAIRS_OFF_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | READS_ON_TARGET | EXPECTED_DISTINCT | FRAC_DUPES | UNIQUE_READS | TOTAL_READS | AFTER_FILTERING_GC_CONTENT | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | FRAGMENT_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_ALIGNED | PROPER_PAIRS_PERCENT | PSEUDOALIGNED_READS |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | 0.968095 | 63.27 | 0.9239 | 0.006106 | 151.4 | 139.0 | Yes | 0.96928 | 0.458006 | 0.096 | 0.189 | 3.908 | 567572924.0 | 95.65 | 0.0 | 50.754407166666674 | 27.3978 | 0.473 | 0.706 | 0.0 | 0.0 | 0.994 | 2.895 | 98.14505166666667 | 588870310.0 | 281617739.0 | 0.712514 | 0.09425 | 0.894541 | 587.338071 | 255.0 | 0.612498 | 0.078434 | 0.921566 | 12354015.0 | 145154687.0 | 30236558.0 | 286978661.0 | 394474736.0 | 0.455209 | 320811083.0 | 9990000000.0 | 0.556816 | 75010425461.0 | 588870310.0 | 88.08179471098867 | |||||||||
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | 0.973286 | 63.11 | 0.9561 | 0.005429 | 158.3 | 143.0 | Yes | 0.974228 | 0.476427 | 0.032 | 0.061 | 3.666 | 572408847.0 | 96.02 | 0.0 | 46.071608166666664 | 35.410399999999996 | 1.17 | 1.579 | 0.0 | 0.0 | 2.058 | 5.638 | 98.68791999999999 | 592127520.0 | 284287520.0 | 0.699599 | 0.054379 | 0.935302 | 608.984806 | 225.0 | 0.596879 | 0.037093 | 0.962907 | 5682729.0 | 147517792.0 | 16942065.0 | 291396838.0 | 405762343.0 | 0.47384 | 311553794.0 | 9990000000.0 | 0.551953 | 76697120515.0 | 592127520.0 | 90.34269625547327 | |||||||||
| NTC_0001_0001_B23LG7FLT4_1 | 0.887084 | N/A | 0.4343 | 0.314682 | 43.8 | 31.0 | Skipped | 0.939674 | 0.664757 | 0.0 | 0.0 | 0.0 | 12425.0 | 11.18 | 0.0 | 51.76868764828632 | 53.3761 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 5.25775376611497 | 91966.0 | 5139.0 | 0.0 | 0.406419 | 0.015579 | 0.000359 | 0.0 | 0.0 | 0.965544 | 0.034456 | 9836.0 | 351.0 | 20349.0 | 780.0 | 50663.0 | 0.455571 | 50069.0 | 9999000000.0 | 0.710838 | 4837420.0 | 91966.0 | 2.1375834475441002 | |||||||||
| NTC_0001_0001_B23LG7FLT4_2 | 0.779184 | N/A | 0.5533 | 0.987378 | 55.1 | 31.0 | Skipped | 0.895556 | 0.653707 | 0.0 | 0.0 | 0.0 | 6099.0 | 0.18 | 0.0 | 2.253457497815756 | 78.2173 | 0.0 | 0.0 | 0.0 | 0.0 | 0.083 | 0.392 | 97.78592281628913 | 2294400.0 | 2085.0 | 0.0 | 0.004232 | 0.000175 | 0.000437 | 0.0 | 0.0 | 0.959578 | 0.040423 | 4724.0 | 199.0 | 9630.0 | 399.0 | 44662.0 | 0.008251 | 2275468.0 | 9999000000.0 | 0.861146 | 266303719.0 | 2294400.0 | 0.2136276926643007 |
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