File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__73d51683--20260607-225254/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 4.7 KB
- Workflow Run
- dev_rna_exp0008_exp0011_73d51683
- Published
- Jun 08, 2026 6:34 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 80.2735 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 92.553 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 94.7062 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9889.424065204 | bclconvert | |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 381010539 | bclconvert |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 2419440325 | bclconvert |
| NTC_0001_0001_B23LG7FLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 874575 | bclconvert |
| NTC_0001_0001_B23LG7FLT4_2 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 1173175 | bclconvert |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 588870310.0 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.894541 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.921566 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.09425 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.078434 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 286978661.0 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 145154687.0 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 30236558.0 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 12354015.0 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 281617739.0 | star |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.006106 | star |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 139.0 | kallisto |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.189 | kallisto |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 2.895 | kallisto |
| FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 63.27 | contamination |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 592127520.0 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.935302 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.962907 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.054379 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.037093 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 291396838.0 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 147517792.0 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 16942065.0 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 5682729.0 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 284287520.0 | star |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.005429 | star |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 143.0 | kallisto |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.061 | kallisto |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 5.638 | kallisto |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 63.11 | contamination |
| NTC_0001_0001_B23LG7FLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 91966.0 | seqtools |
| NTC_0001_0001_B23LG7FLT4_2 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 2294400.0 | seqtools |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 60 | fusion |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 60 | fusion |
47 rows