AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)

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ARRIBA FILTERING SUMMARY
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Total fusions: 691
  Pass (FILTER=PASS): 155 (22.4%)
  Fail (FILTER=FAIL): 536 (77.6%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 9
  All 9 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 143
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 103
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 31
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 30
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 29
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 26
  confidence_below_min(low<high): 26
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 25
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 22
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 18
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 17
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 15
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 14
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 10
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 5

Breakdown by confidence:
  high: 155 pass, 10 fail (total: 165)
  low: 0 pass, 240 fail (total: 240)
  medium: 0 pass, 286 fail (total: 286)
Arriba filter: 691 rows -> 155 PASS; wrote MCF7_FFPE_RNA_0001_B23LG7FLT4_3.arriba.fusions.filtered.tsv and MCF7_FFPE_RNA_0001_B23LG7FLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: MCF7_FFPE_RNA_0001_B23LG7FLT4_3.arriba.fusions.filter_summary.txt