Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/85187f3da8810bad327fba8c7db4d1/HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1_2.fastp.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/c8d937ce2bbe717917ff0d2e2487fa/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/c8d937ce2bbe717917ff0d2e2487fa/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/85187f3da8810bad327fba8c7db4d1/HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/e67cc2de769685a4f28952ff924403/HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1.Chimeric.out.junction ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.9JQm0xfd57/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary -sample contains 68408748 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir -J /tmp/nxf.9JQm0xfd57/HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.9JQm0xfd57/HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.12 min). -mapping reads to genes [10000], rate=30000.00/min [20000], rate=27906.98/min [30000], rate=31034.48/min [40000], rate=25531.91/min [50000], rate=23809.52/min [60000], rate=24000.00/min [70000], rate=25000.00/min [80000], rate=26373.63/min [90000], rate=27692.31/min [100000], rate=28708.13/min [110000], rate=29464.29/min [120000], rate=30638.30/min [130000], rate=32098.77/min [140000], rate=33333.33/min [150000], rate=33088.24/min [160000], rate=33333.33/min [170000], rate=33663.37/min [180000], rate=31952.66/min [190000], rate=30158.73/min [200000], rate=29850.75/min [210000], rate=30143.54/min [220000], rate=30414.75/min [230000], rate=30666.67/min [240000], rate=31168.83/min [250000], rate=31380.75/min [260000], rate=31707.32/min [270000], rate=32142.86/min [280000], rate=32748.54/min [290000], rate=32830.19/min [300000], rate=32727.27/min [310000], rate=32746.48/min [320000], rate=32820.51/min [330000], rate=32945.09/min [340000], rate=32956.38/min [350000], rate=33386.33/min [360000], rate=33802.82/min [370000], rate=34049.08/min [380000], rate=34182.91/min [390000], rate=34615.38/min [400000], rate=35087.72/min [410000], rate=35395.68/min [420000], rate=35694.05/min [430000], rate=36185.13/min [440000], rate=36065.57/min [450000], rate=36193.03/min [460000], rate=36363.64/min [470000], rate=36575.88/min [480000], rate=36828.64/min [490000], rate=37074.40/min [500000], rate=37406.48/min [510000], rate=37592.14/min [520000], rate=37635.71/min [530000], rate=38175.27/min [540000], rate=38802.40/min [550000], rate=39426.52/min [560000], rate=39857.65/min [570000], rate=40093.79/min [580000], rate=40418.12/min [590000], rate=40877.60/min [600000], rate=41237.11/min [610000], rate=41733.18/min [620000], rate=42320.82/min [630000], rate=42663.66/min [640000], rate=42905.03/min [650000], rate=43285.24/min [660000], rate=43612.33/min [670000], rate=43886.46/min [680000], rate=44203.68/min [690000], rate=44708.42/min [700000], rate=45307.44/min [710000], rate=45806.45/min [720000], rate=46104.59/min [730000], rate=46251.32/min [740000], rate=46589.72/min [750000], rate=46875.00/min [760000], rate=47253.89/min [770000], rate=47776.63/min [780000], rate=48297.21/min [790000], rate=48515.86/min [800000], rate=48730.96/min [810000], rate=49041.37/min [820000], rate=49298.60/min [830000], rate=49502.98/min [840000], rate=49851.63/min [850000], rate=50000.00/min [860000], rate=50390.62/min [870000], rate=50877.19/min [880000], rate=51162.79/min [890000], rate=51346.15/min [900000], rate=51428.57/min [910000], rate=51655.63/min [920000], rate=51733.83/min [930000], rate=51618.87/min [940000], rate=51648.35/min [950000], rate=51724.14/min [960000], rate=51705.57/min [970000], rate=51825.47/min [980000], rate=51989.39/min [990000], rate=52105.26/min [1000000], rate=51813.47/min [1010000], rate=51312.45/min [1020000], rate=50872.82/min [1030000], rate=50614.25/min [1040000], rate=50608.27/min [1050000], rate=50480.77/min [1060000], rate=50118.20/min [1070000], rate=49575.29/min [1080000], rate=49390.24/min [1090000], rate=49395.77/min [1100000], rate=49438.20/min [1110000], rate=49369.90/min [1120000], rate=49194.73/min [1130000], rate=49023.86/min -building interval tree based on /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.12 min). -mapping reads to genes [10000], rate=66666.67/min [20000], rate=80000.00/min [30000], rate=85714.29/min [40000], rate=85714.29/min [50000], rate=78947.37/min [60000], rate=73469.39/min [70000], rate=62686.57/min [80000], rate=59259.26/min [90000], rate=60000.00/min [100000], rate=60606.06/min [110000], rate=53658.54/min [120000], rate=50349.65/min [130000], rate=51655.63/min [140000], rate=52500.00/min [150000], rate=53571.43/min [160000], rate=53932.58/min [170000], rate=54545.45/min [180000], rate=55384.62/min [190000], rate=57000.00/min [200000], rate=58536.59/min [210000], rate=60869.57/min [220000], rate=62264.15/min [230000], rate=63888.89/min [240000], rate=65753.42/min [250000], rate=67264.57/min [260000], rate=68421.05/min [270000], rate=69527.90/min [280000], rate=71489.36/min [290000], rate=73109.24/min [300000], rate=75630.25/min [310000], rate=77500.00/min [320000], rate=79012.35/min [330000], rate=80487.80/min [340000], rate=81927.71/min [350000], rate=83665.34/min [360000], rate=84705.88/min [370000], rate=86046.51/min [380000], rate=84444.44/min [390000], rate=83274.02/min [400000], rate=78431.37/min [410000], rate=75000.00/min [420000], rate=71794.87/min [430000], rate=71666.67/min [440000], rate=72328.77/min [450000], rate=71240.11/min [460000], rate=69521.41/min [470000], rate=68280.87/min [480000], rate=68085.11/min [490000], rate=68213.46/min [500000], rate=68337.13/min [510000], rate=68456.38/min [520000], rate=66666.67/min [530000], rate=66250.00/min [540000], rate=66122.45/min [550000], rate=64960.63/min [560000], rate=62921.35/min [570000], rate=62068.97/min [580000], rate=61052.63/min [590000], rate=60000.00/min [600000], rate=59210.53/min [610000], rate=58187.60/min [620000], rate=57407.41/min [630000], rate=57359.64/min [640000], rate=56973.29/min [650000], rate=56034.48/min [660000], rate=55696.20/min [670000], rate=55295.74/min [680000], rate=54472.63/min [690000], rate=53976.53/min [700000], rate=53367.22/min [710000], rate=53250.00/min [720000], rate=52941.18/min [730000], rate=52517.99/min [740000], rate=52112.68/min [750000], rate=52264.81/min [760000], rate=52173.91/min [770000], rate=52144.47/min [780000], rate=52173.91/min [790000], rate=52317.88/min [800000], rate=52459.02/min [810000], rate=52654.39/min [820000], rate=52846.40/min [830000], rate=51983.30/min [840000], rate=50960.57/min [850000], rate=50345.51/min [860000], rate=49663.14/min [870000], rate=49014.08/min [880000], rate=48843.66/min [890000], rate=48369.57/min [900000], rate=48128.34/min [910000], rate=47560.98/min [920000], rate=47381.97/min [930000], rate=47328.24/min [940000], rate=47196.65/min [950000], rate=47185.43/min [960000], rate=47213.11/min [970000], rate=47278.64/min [980000], rate=47343.00/min [990000], rate=47482.01/min [1000000], rate=47619.05/min [1010000], rate=47678.99/min [1020000], rate=47700.70/min [1030000], rate=47795.82/min [1040000], rate=48000.00/min [1050000], rate=48387.10/min [1060000], rate=48698.32/min [1070000], rate=48821.29/min [1080000], rate=48942.60/min [1090000], rate=49099.10/min [1100000], rate=48780.49/min [1110000], rate=47810.48/min [1120000], rate=47058.82/min -building interval tree based on /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.12 min). -mapping reads to genes [10000], rate=66666.67/min [20000], rate=70588.24/min [30000], rate=78260.87/min [40000], rate=77419.35/min [50000], rate=78947.37/min [60000], rate=90000.00/min [70000], rate=93333.33/min [80000], rate=88888.89/min [90000], rate=60000.00/min [100000], rate=50847.46/min [110000], rate=50000.00/min [120000], rate=49315.07/min [130000], rate=49056.60/min [140000], rate=49704.14/min [150000], rate=50279.33/min [160000], rate=51063.83/min [170000], rate=52577.32/min [180000], rate=54000.00/min [190000], rate=53773.58/min [200000], rate=52631.58/min [210000], rate=52282.16/min [220000], rate=50769.23/min [230000], rate=47750.87/min [240000], rate=46451.61/min [250000], rate=45731.71/min [260000], rate=45747.80/min [270000], rate=45633.80/min [280000], rate=45405.41/min [290000], rate=45077.72/min [300000], rate=45112.78/min [310000], rate=44927.54/min [320000], rate=45714.29/min [330000], rate=46588.24/min [340000], rate=47331.79/min [350000], rate=47191.01/min [360000], rate=46551.72/min [370000], rate=45585.22/min [380000], rate=45238.10/min [390000], rate=44571.43/min [400000], rate=43956.04/min [410000], rate=42782.61/min [420000], rate=42000.00/min [430000], rate=41280.00/min [440000], rate=40930.23/min [450000], rate=40540.54/min [460000], rate=40409.96/min [470000], rate=40285.71/min [480000], rate=40336.13/min [490000], rate=40833.33/min [500000], rate=41265.47/min [510000], rate=41576.09/min [520000], rate=41879.19/min [530000], rate=42063.49/min [540000], rate=41273.89/min [550000], rate=40441.18/min [560000], rate=40384.62/min [570000], rate=40188.01/min [580000], rate=40138.41/min [590000], rate=40318.91/min [600000], rate=40449.44/min [610000], rate=40531.56/min [620000], rate=40655.74/min [630000], rate=40732.76/min [640000], rate=40591.97/min [650000], rate=40667.36/min [660000], rate=40909.09/min [670000], rate=41020.41/min [680000], rate=41170.53/min [690000], rate=41400.00/min [700000], rate=41543.03/min [710000], rate=41846.76/min [720000], rate=42146.34/min [730000], rate=42034.55/min [740000], rate=41886.79/min [750000], rate=41705.28/min [760000], rate=41605.84/min [770000], rate=41546.76/min [780000], rate=41526.18/min [790000], rate=41542.51/min [800000], rate=41702.87/min [810000], rate=41932.70/min [820000], rate=42195.54/min [830000], rate=42491.47/min [840000], rate=42603.55/min [850000], rate=42570.95/min [860000], rate=42644.63/min [870000], rate=42716.86/min [880000], rate=42926.83/min [890000], rate=43064.52/min [900000], rate=43165.47/min [910000], rate=43333.33/min [920000], rate=43226.31/min [930000], rate=43356.64/min [940000], rate=43451.46/min [950000], rate=43913.71/min [960000], rate=44273.64/min [970000], rate=44563.55/min [980000], rate=44748.86/min [990000], rate=45000.00/min [1000000], rate=45146.73/min [1010000], rate=45190.16/min [1020000], rate=45132.74/min [1030000], rate=45208.49/min [1040000], rate=45021.65/min [1050000], rate=44935.81/min [1060000], rate=45010.62/min [1070000], rate=44926.52/min [1080000], rate=45031.27/min [1090000], rate=45072.36/min [1100000], rate=45267.49/min [1110000], rate=45491.80/min [1120000], rate=45559.32/min [1130000], rate=45687.33/min -building interval tree based on /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.12 min). -mapping reads to genes [10000], rate=85714.29/min [20000], rate=100000.00/min [30000], rate=105882.35/min [40000], rate=114285.71/min [50000], rate=120000.00/min [60000], rate=128571.43/min [70000], rate=120000.00/min [80000], rate=129729.73/min [90000], rate=142105.26/min [100000], rate=136363.64/min [110000], rate=124528.30/min [120000], rate=120000.00/min [130000], rate=104000.00/min [140000], rate=95454.55/min [150000], rate=97826.09/min [160000], rate=98969.07/min [170000], rate=100000.00/min [180000], rate=104854.37/min [190000], rate=104587.16/min [200000], rate=101694.92/min [210000], rate=100800.00/min [220000], rate=100763.36/min [230000], rate=102222.22/min [240000], rate=100699.30/min [250000], rate=102739.73/min [260000], rate=104000.00/min [270000], rate=106578.95/min [280000], rate=106329.11/min [290000], rate=106097.56/min [300000], rate=106508.88/min [310000], rate=107514.45/min [320000], rate=107262.57/min [330000], rate=108196.72/min [340000], rate=108510.64/min [350000], rate=109375.00/min [360000], rate=92307.69/min [370000], rate=79569.89/min [380000], rate=67857.14/min [390000], rate=58793.97/min [400000], rate=55299.54/min [410000], rate=53017.24/min [420000], rate=49802.37/min [430000], rate=46402.88/min [440000], rate=43564.36/min [450000], rate=41411.04/min [460000], rate=40469.21/min [470000], rate=39551.19/min [480000], rate=38918.92/min [490000], rate=38281.25/min [500000], rate=38216.56/min [510000], rate=38059.70/min [520000], rate=37454.98/min [530000], rate=37019.79/min [540000], rate=37113.40/min [550000], rate=37246.05/min [560000], rate=37458.19/min [570000], rate=37665.20/min [580000], rate=37867.25/min [590000], rate=38023.63/min [600000], rate=38216.56/min [610000], rate=38324.61/min [620000], rate=38311.02/min [630000], rate=38414.63/min [640000], rate=38709.68/min [650000], rate=38844.62/min [660000], rate=38899.80/min [670000], rate=39105.06/min [680000], rate=39382.24/min [690000], rate=39617.22/min [700000], rate=39848.20/min [710000], rate=39887.64/min [720000], rate=39669.42/min [730000], rate=39673.91/min [740000], rate=39642.86/min [750000], rate=39717.56/min [760000], rate=39755.88/min [770000], rate=39827.59/min [780000], rate=40034.22/min [790000], rate=40203.56/min [800000], rate=40438.08/min [810000], rate=40635.45/min [820000], rate=40863.79/min [830000], rate=41123.04/min [840000], rate=40909.09/min [850000], rate=40800.00/min [860000], rate=40502.35/min [870000], rate=40277.78/min [880000], rate=40243.90/min [890000], rate=40150.38/min [900000], rate=40148.70/min [910000], rate=39795.92/min [920000], rate=39598.28/min [930000], rate=39602.56/min [940000], rate=39468.16/min [950000], rate=39229.18/min [960000], rate=39263.80/min [970000], rate=39297.77/min [980000], rate=39489.59/min [990000], rate=39679.36/min [1000000], rate=39893.62/min [1010000], rate=39789.89/min [1020000], rate=39791.94/min [1030000], rate=39896.71/min [1040000], rate=40000.00/min [1050000], rate=40127.39/min [1060000], rate=40202.28/min [1070000], rate=40150.09/min [1080000], rate=40000.00/min [1090000], rate=39951.13/min [1100000], rate=40048.54/min [1110000], rate=40193.12/min [1120000], rate=40336.13/min [1130000], rate=40501.79/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir --filt_file /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 6000000.00 reads per min processed... 12000000.00 reads per min processed... 9000000.00 reads per min processed... 8000000.00 reads per min processed... 4285714.29 reads per min processed... 4000000.00 reads per min processed... 3818181.82 reads per min processed... 3428571.43 reads per min processed... 3375000.00 reads per min processed... 3157894.74 reads per min processed... 3142857.14 reads per min processed... 2880000.00 reads per min processed... 2689655.17 reads per min processed... 2709677.42 reads per min processed... 2647058.82 reads per min processed... 2666666.67 reads per min processed... 2684210.53 reads per min processed... 2634146.34 reads per min processed... 2651162.79 reads per min processed... 2666666.67 reads per min processed... 2680851.06 reads per min processed... 2693877.55 reads per min processed... 2705882.35 reads per min processed... 2769230.77 reads per min processed... 2830188.68 reads per min processed... 2888888.89 reads per min processed... 2892857.14 reads per min processed... 2847457.63 reads per min processed... 2852459.02 reads per min processed... 2857142.86 reads per min processed... 2861538.46 reads per min processed... 2865671.64 reads per min processed... 2869565.22 reads per min processed... 2833333.33 reads per min processed... 2837837.84 reads per min processed... 2842105.26 reads per min processed... 2846153.85 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.9JQm0xfd57/HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -104943.412917 EM: Round [1] log likelihood: -104749.236454 EM: Round [2] log likelihood: -104673.259221 EM: Round [3] log likelihood: -104636.001163 EM: Round [4] log likelihood: -104615.794743 EM: Round [5] log likelihood: -104604.214798 EM: Round [6] log likelihood: -104597.296525 EM: Round [7] log likelihood: -104592.994605 EM: Round [8] log likelihood: -104590.208956 EM: Round [9] log likelihood: -104588.332501 EM: Round [10] log likelihood: -104587.021552 EM: Round [11] log likelihood: -104586.075623 EM: Round [12] log likelihood: -104585.373783 EM: Round [13] log likelihood: -104584.840512 EM: Round [14] log likelihood: -104584.427038 EM: Round [15] log likelihood: -104584.100858 EM: Round [16] log likelihood: -104583.839698 EM: Round [17] log likelihood: -104583.627900 EM: Round [18] log likelihood: -104583.454215 EM: Round [19] log likelihood: -104583.310397 EM: Round [20] log likelihood: -104583.190294 EM: Round [21] log likelihood: -104583.089243 EM: Round [22] log likelihood: -104583.003659 EM: Round [23] log likelihood: -104582.930747 EM: Round [24] log likelihood: -104582.868306 EM: Round [25] log likelihood: -104582.814579 EM: Round [26] log likelihood: -104582.768154 EM: Round [27] log likelihood: -104582.727883 EM: Round [28] log likelihood: -104582.692827 EM: Round [29] log likelihood: -104582.662211 EM: Round [30] log likelihood: -104582.635393 EM: Round [31] log likelihood: -104582.611835 EM: Round [32] log likelihood: -104582.591087 EM: Round [33] log likelihood: -104582.572768 EM: Round [34] log likelihood: -104582.556555 EM: Round [35] log likelihood: -104582.542175 EM: Round [36] log likelihood: -104582.529393 EM: Round [37] log likelihood: -104582.518007 EM: Round [38] log likelihood: -104582.507845 EM: Round [39] log likelihood: -104582.498757 EM: Round [40] log likelihood: -104582.490614 EM: Round [41] log likelihood: -104582.483305 EM: Round [42] log likelihood: -104582.476732 EM: Round [43] log likelihood: -104582.470811 EM: Round [44] log likelihood: -104582.465467 EM: Round [45] log likelihood: -104582.460635 EM: Round [46] log likelihood: -104582.456258 EM: Round [47] log likelihood: -104582.452287 EM: Round [48] log likelihood: -104582.448678 EM: Round [49] log likelihood: -104582.445392 EM: Round [50] log likelihood: -104582.442395 EM: Round [51] log likelihood: -104582.439657 EM: Round [52] log likelihood: -104582.437150 EM: Round [53] log likelihood: -104582.434852 EM: Round [54] log likelihood: -104582.432741 EM: Round [55] log likelihood: -104582.430798 EM: Round [56] log likelihood: -104582.429007 EM: Round [57] log likelihood: -104582.427353 EM: Round [58] log likelihood: -104582.425822 EM: Round [59] log likelihood: -104582.424404 EM: Round [60] log likelihood: -104582.423087 EM: Round [61] log likelihood: -104582.421862 EM: Round [62] log likelihood: -104582.420720 EM: Round [63] log likelihood: -104582.419654 EM: Round [64] log likelihood: -104582.418657 EM: Round [65] log likelihood: -104582.417722 EM: Round [66] log likelihood: -104582.416845 EM: Round [67] log likelihood: -104582.416021 EM: Round [68] log likelihood: -104582.415244 EM: Round [69] log likelihood: -104582.414511 EM: Round [70] log likelihood: -104582.413818 EM: Round [71] log likelihood: -104582.413162 EM: Round [72] log likelihood: -104582.412540 EM: Round [73] log likelihood: -104582.411949 EM: Round [74] log likelihood: -104582.411386 EM: Round [75] log likelihood: -104582.410851 EM: Round [76] log likelihood: -104582.410339 EM: Round [77] log likelihood: -104582.409850 EM: Round [78] log likelihood: -104582.409383 EM: Round [79] log likelihood: -104582.408934 EM: Round [80] log likelihood: -104582.408504 EM: Round [81] log likelihood: -104582.408091 EM: Round [82] log likelihood: -104582.407693 EM: Round [83] log likelihood: -104582.407310 EM: Round [84] log likelihood: -104582.406940 EM: Round [85] log likelihood: -104582.406583 EM: Round [86] log likelihood: -104582.406239 EM: Round [87] log likelihood: -104582.405905 EM: Round [88] log likelihood: -104582.405582 EM: Round [89] log likelihood: -104582.405269 EM: Round [90] log likelihood: -104582.404965 EM: Round [91] log likelihood: -104582.404670 EM: Round [92] log likelihood: -104582.404383 EM: Round [93] log likelihood: -104582.404104 EM: Round [94] log likelihood: -104582.403833 EM: Round [95] log likelihood: -104582.403568 EM: Round [96] log likelihood: -104582.403311 EM: Round [97] log likelihood: -104582.403060 EM: Round [98] log likelihood: -104582.402815 EM: Round [99] log likelihood: -104582.402575 EM: Round [100] log likelihood: -104582.402341 EM: Round [101] log likelihood: -104582.402113 EM: Round [102] log likelihood: -104582.401890 EM: Round [103] log likelihood: -104582.401671 EM: Round [104] log likelihood: -104582.401457 EM: Round [105] log likelihood: -104582.401248 EM: Round [106] log likelihood: -104582.401043 EM: Round [107] log likelihood: -104582.400842 EM: Round [108] log likelihood: -104582.400645 EM: Round [109] log likelihood: -104582.400452 EM: Round [110] log likelihood: -104582.400263 EM: Round [111] log likelihood: -104582.400077 EM: Round [112] log likelihood: -104582.399895 EM: Round [113] log likelihood: -104582.399716 EM: Round [114] log likelihood: -104582.399541 EM: Round [115] log likelihood: -104582.399369 EM: Round [116] log likelihood: -104582.399200 EM: Round [117] log likelihood: -104582.399033 EM: Round [118] log likelihood: -104582.398870 EM: Round [119] log likelihood: -104582.398710 EM: Round [120] log likelihood: -104582.398552 EM: Round [121] log likelihood: -104582.398397 EM: Round [122] log likelihood: -104582.398245 EM: Round [123] log likelihood: -104582.398095 EM: Round [124] log likelihood: -104582.397948 EM: Round [125] log likelihood: -104582.397804 EM: Round [126] log likelihood: -104582.397661 EM: Round [127] log likelihood: -104582.397521 EM: Round [128] log likelihood: -104582.397384 EM: Round [129] log likelihood: -104582.397248 EM: Round [130] log likelihood: -104582.397115 EM: Round [131] log likelihood: -104582.396984 EM: Round [132] log likelihood: -104582.396855 EM: Round [133] log likelihood: -104582.396729 EM: Round [134] log likelihood: -104582.396604 EM: Round [135] log likelihood: -104582.396481 EM: Round [136] log likelihood: -104582.396361 EM: Round [137] log likelihood: -104582.396242 EM: Round [138] log likelihood: -104582.396125 EM: Round [139] log likelihood: -104582.396010 EM: Round [140] log likelihood: -104582.395897 EM: Round [141] log likelihood: -104582.395786 EM: Round [142] log likelihood: -104582.395676 EM: Round [143] log likelihood: -104582.395568 EM: Round [144] log likelihood: -104582.395462 EM: Round [145] log likelihood: -104582.395358 EM: Round [146] log likelihood: -104582.395255 EM: Round [147] log likelihood: -104582.395154 EM: Round [148] log likelihood: -104582.395054 EM: Stopping iterations at round 148 due to insufficient improvement in likelihood. EM: Starting log likelihood: -104722.588913 EM: Round [1] log likelihood: -104564.087029 EM: Round [2] log likelihood: -104502.984500 EM: Round [3] log likelihood: -104473.777831 EM: Round [4] log likelihood: -104458.290780 EM: Round [5] log likelihood: -104449.606301 EM: Round [6] log likelihood: -104444.532336 EM: Round [7] log likelihood: -104441.445466 EM: Round [8] log likelihood: -104439.485964 EM: Round [9] log likelihood: -104438.188028 EM: Round [10] log likelihood: -104437.293185 EM: Round [11] log likelihood: -104436.653730 EM: Round [12] log likelihood: -104436.182362 EM: Round [13] log likelihood: -104435.825599 EM: Round [14] log likelihood: -104435.549493 EM: Round [15] log likelihood: -104435.331760 EM: Round [16] log likelihood: -104435.157305 EM: Round [17] log likelihood: -104435.015622 EM: Round [18] log likelihood: -104434.899210 EM: Round [19] log likelihood: -104434.802596 EM: Round [20] log likelihood: -104434.721712 EM: Round [21] log likelihood: -104434.653477 EM: Round [22] log likelihood: -104434.595523 EM: Round [23] log likelihood: -104434.546006 EM: Round [24] log likelihood: -104434.503471 EM: Round [25] log likelihood: -104434.466756 EM: Round [26] log likelihood: -104434.434928 EM: Round [27] log likelihood: -104434.407226 EM: Round [28] log likelihood: -104434.383025 EM: Round [29] log likelihood: -104434.361813 EM: Round [30] log likelihood: -104434.343162 EM: Round [31] log likelihood: -104434.326713 EM: Round [32] log likelihood: -104434.312168 EM: Round [33] log likelihood: -104434.299270 EM: Round [34] log likelihood: -104434.287807 EM: Round [35] log likelihood: -104434.277592 EM: Round [36] log likelihood: -104434.268470 EM: Round [37] log likelihood: -104434.260306 EM: Round [38] log likelihood: -104434.252983 EM: Round [39] log likelihood: -104434.246401 EM: Round [40] log likelihood: -104434.240473 EM: Round [41] log likelihood: -104434.235124 EM: Round [42] log likelihood: -104434.230286 EM: Round [43] log likelihood: -104434.225904 EM: Round [44] log likelihood: -104434.221926 EM: Round [45] log likelihood: -104434.218309 EM: Round [46] log likelihood: -104434.215014 EM: Round [47] log likelihood: -104434.212005 EM: Round [48] log likelihood: -104434.209254 EM: Round [49] log likelihood: -104434.206734 EM: Round [50] log likelihood: -104434.204421 EM: Round [51] log likelihood: -104434.202294 EM: Round [52] log likelihood: -104434.200335 EM: Round [53] log likelihood: -104434.198527 EM: Round [54] log likelihood: -104434.196856 EM: Round [55] log likelihood: -104434.195308 EM: Round [56] log likelihood: -104434.193871 EM: Round [57] log likelihood: -104434.192536 EM: Round [58] log likelihood: -104434.191292 EM: Round [59] log likelihood: -104434.190132 EM: Round [60] log likelihood: -104434.189048 EM: Round [61] log likelihood: -104434.188033 EM: Round [62] log likelihood: -104434.187081 EM: Round [63] log likelihood: -104434.186187 EM: Round [64] log likelihood: -104434.185345 EM: Round [65] log likelihood: -104434.184552 EM: Round [66] log likelihood: -104434.183803 EM: Round [67] log likelihood: -104434.183094 EM: Round [68] log likelihood: -104434.182423 EM: Round [69] log likelihood: -104434.181786 EM: Round [70] log likelihood: -104434.181181 EM: Round [71] log likelihood: -104434.180604 EM: Round [72] log likelihood: -104434.180055 EM: Round [73] log likelihood: -104434.179531 EM: Round [74] log likelihood: -104434.179030 EM: Round [75] log likelihood: -104434.178550 EM: Round [76] log likelihood: -104434.178090 EM: Round [77] log likelihood: -104434.177648 EM: Round [78] log likelihood: -104434.177224 EM: Round [79] log likelihood: -104434.176816 EM: Round [80] log likelihood: -104434.176423 EM: Round [81] log likelihood: -104434.176043 EM: Round [82] log likelihood: -104434.175677 EM: Round [83] log likelihood: -104434.175324 EM: Round [84] log likelihood: -104434.174981 EM: Round [85] log likelihood: -104434.174650 EM: Round [86] log likelihood: -104434.174329 EM: Round [87] log likelihood: -104434.174017 EM: Round [88] log likelihood: -104434.173715 EM: Round [89] log likelihood: -104434.173421 EM: Round [90] log likelihood: -104434.173136 EM: Round [91] log likelihood: -104434.172858 EM: Round [92] log likelihood: -104434.172587 EM: Round [93] log likelihood: -104434.172324 EM: Round [94] log likelihood: -104434.172066 EM: Round [95] log likelihood: -104434.171816 EM: Round [96] log likelihood: -104434.171571 EM: Round [97] log likelihood: -104434.171332 EM: Round [98] log likelihood: -104434.171099 EM: Round [99] log likelihood: -104434.170870 EM: Round [100] log likelihood: -104434.170647 EM: Round [101] log likelihood: -104434.170429 EM: Round [102] log likelihood: -104434.170215 EM: Round [103] log likelihood: -104434.170006 EM: Round [104] log likelihood: -104434.169801 EM: Round [105] log likelihood: -104434.169601 EM: Round [106] log likelihood: -104434.169404 EM: Round [107] log likelihood: -104434.169211 EM: Round [108] log likelihood: -104434.169022 EM: Round [109] log likelihood: -104434.168836 EM: Round [110] log likelihood: -104434.168654 EM: Round [111] log likelihood: -104434.168475 EM: Round [112] log likelihood: -104434.168300 EM: Round [113] log likelihood: -104434.168128 EM: Round [114] log likelihood: -104434.167959 EM: Round [115] log likelihood: -104434.167793 EM: Round [116] log likelihood: -104434.167630 EM: Round [117] log likelihood: -104434.167469 EM: Round [118] log likelihood: -104434.167312 EM: Round [119] log likelihood: -104434.167157 EM: Round [120] log likelihood: -104434.167005 EM: Round [121] log likelihood: -104434.166856 EM: Round [122] log likelihood: -104434.166709 EM: Round [123] log likelihood: -104434.166564 EM: Round [124] log likelihood: -104434.166422 EM: Round [125] log likelihood: -104434.166282 EM: Round [126] log likelihood: -104434.166145 EM: Round [127] log likelihood: -104434.166010 EM: Round [128] log likelihood: -104434.165877 EM: Round [129] log likelihood: -104434.165746 EM: Round [130] log likelihood: -104434.165617 EM: Round [131] log likelihood: -104434.165491 EM: Round [132] log likelihood: -104434.165366 EM: Round [133] log likelihood: -104434.165244 EM: Round [134] log likelihood: -104434.165123 EM: Round [135] log likelihood: -104434.165005 EM: Round [136] log likelihood: -104434.164888 EM: Round [137] log likelihood: -104434.164773 EM: Round [138] log likelihood: -104434.164660 EM: Round [139] log likelihood: -104434.164549 EM: Round [140] log likelihood: -104434.164440 EM: Round [141] log likelihood: -104434.164332 EM: Round [142] log likelihood: -104434.164226 EM: Round [143] log likelihood: -104434.164122 EM: Round [144] log likelihood: -104434.164020 EM: Round [145] log likelihood: -104434.163919 EM: Round [146] log likelihood: -104434.163819 EM: Stopping iterations at round 146 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 68408748 > /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir > /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir --annotate /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir -done, see /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 715, filtered: 6169) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.9JQm0xfd57/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.9JQm0xfd57/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000225594.1] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000128438.10] WARNING, no entry stored in dbm for [ENSG00000238276.6] WARNING, no entry stored in dbm for [ENSG00000230559.1] WARNING, no entry stored in dbm for [ENSG00000239899.3] WARNING, no entry stored in dbm for [ENSG00000241175.3] WARNING, no entry stored in dbm for [ENSG00000227632.2] WARNING, no entry stored in dbm for [ENSG00000287721.1] WARNING, no entry stored in dbm for [ENSG00000272142.4] WARNING, no entry stored in dbm for [ENSG00000181126.13] WARNING, no entry stored in dbm for [ENSG00000260298.2] WARNING, no entry stored in dbm for [ENSG00000188460.4] WARNING, no entry stored in dbm for [ENSG00000225205.5] WARNING, no entry stored in dbm for [ENSG00000217289.3] WARNING, no entry stored in dbm for [ENSG00000257343.1] WARNING, no entry stored in dbm for [ENSG00000264920.2] WARNING, no entry stored in dbm for [ENSG00000287664.1] WARNING, no entry stored in dbm for [ENSG00000234420.7] WARNING, no entry stored in dbm for [ENSG00000237992.3] WARNING, no entry stored in dbm for [ENSG00000220949.2] WARNING, no entry stored in dbm for [ENSG00000282458.1] WARNING, no entry stored in dbm for [ENSG00000234769.7] WARNING, no entry stored in dbm for [ENSG00000225292.2] WARNING, no entry stored in dbm for [ENSG00000286694.1] WARNING, no entry stored in dbm for [ENSG00000277739.1] WARNING, no entry stored in dbm for [ENSG00000283568.1] WARNING, no entry stored in dbm for [ENSG00000199568.1] WARNING, no entry stored in dbm for [ENSG00000238040.1] WARNING, no entry stored in dbm for [ENSG00000227195.11] WARNING, no entry stored in dbm for [ENSG00000235904.3] WARNING, no entry stored in dbm for [ENSG00000170919.16] WARNING, no entry stored in dbm for [ENSG00000260072.1] WARNING, no entry stored in dbm for [ENSG00000266733.7] WARNING, no entry stored in dbm for [ENSG00000228862.4] WARNING, no entry stored in dbm for [ENSG00000253642.6] WARNING, no entry stored in dbm for [ENSG00000270890.1] WARNING, no entry stored in dbm for [ENSG00000228695.10] WARNING, no entry stored in dbm for [ENSG00000288535.1] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for [ENSG00000276721.1] WARNING, no entry stored in dbm for [ENSG00000242207.1] WARNING, no entry stored in dbm for [ENSG00000283795.1] WARNING, no entry stored in dbm for [ENSG00000245556.3] WARNING, no entry stored in dbm for [ENSG00000279159.1] WARNING, no entry stored in dbm for [ENSG00000230629.2] WARNING, no entry stored in dbm for [ENSG00000175886.10] WARNING, no entry stored in dbm for [ENSG00000231562.1] WARNING, no entry stored in dbm for [ENSG00000251474.6] WARNING, no entry stored in dbm for [ENSG00000242993.1] WARNING, no entry stored in dbm for [ENSG00000213295.3] WARNING, no entry stored in dbm for [ENSG00000241129.3] WARNING, no entry stored in dbm for [ENSG00000206975.1] WARNING, no entry stored in dbm for [ENSG00000121089.4] WARNING, no entry stored in dbm for [ENSG00000222177.1] WARNING, no entry stored in dbm for [ENSG00000201342.1] WARNING, no entry stored in dbm for [ENSG00000200296.1] WARNING, no entry stored in dbm for [ENSG00000276047.1] WARNING, no entry stored in dbm for [ENSG00000241529.3] WARNING, no entry stored in dbm for [ENSG00000244056.3] WARNING, no entry stored in dbm for [ENSG00000239437.3] WARNING, no entry stored in dbm for [ENSG00000201758.1] WARNING, no entry stored in dbm for [ENSG00000222240.1] WARNING, no entry stored in dbm for [ENSG00000201315.1] WARNING, no entry stored in dbm for [ENSG00000222240.1] WARNING, no entry stored in dbm for [ENSG00000131401.11] WARNING, no entry stored in dbm for [ENSG00000280219.1] WARNING, no entry stored in dbm for [ENSG00000242894.3] WARNING, no entry stored in dbm for [ENSG00000281128.2] WARNING, no entry stored in dbm for [ENSG00000249859.12] WARNING, no entry stored in dbm for [ENSG00000204434.6] WARNING, no entry stored in dbm for [ENSG00000269350.1] WARNING, no entry stored in dbm for [ENSG00000273125.2] WARNING, no entry stored in dbm for [ENSG00000281649.2] WARNING, no entry stored in dbm for [ENSG00000287901.1] WARNING, no entry stored in dbm for [ENSG00000214465.3] WARNING, no entry stored in dbm for [ENSG00000258853.1] WARNING, no entry stored in dbm for [ENSG00000265802.2] WARNING, no entry stored in dbm for [ENSG00000281692.2] WARNING, no entry stored in dbm for [ENSG00000203709.12] WARNING, no entry stored in dbm for [ENSG00000229167.2] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000235644.1] WARNING, no entry stored in dbm for [ENSG00000260793.2] WARNING, no entry stored in dbm for [ENSG00000251562.8] WARNING, no entry stored in dbm for [ENSG00000232527.8] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000251129.2] WARNING, no entry stored in dbm for [ENSG00000238837.3] WARNING, no entry stored in dbm for [ENSG00000236720.2] WARNING, no entry stored in dbm for [ENSG00000236052.2] WARNING, no entry stored in dbm for [ENSG00000235437.8] WARNING, no entry stored in dbm for [ENSG00000266256.3] WARNING, no entry stored in dbm for [ENSG00000236790.6] WARNING, no entry stored in dbm for [ENSG00000231028.9] WARNING, no entry stored in dbm for [ENSG00000203809.7] WARNING, no entry stored in dbm for [ENSG00000249641.2] WARNING, no entry stored in dbm for [ENSG00000259388.1] WARNING, no entry stored in dbm for [ENSG00000253218.1] WARNING, no entry stored in dbm for [ENSG00000254452.1] WARNING, no entry stored in dbm for [ENSG00000234929.2] WARNING, no entry stored in dbm for [ENSG00000251347.2] WARNING, no entry stored in dbm for [ENSG00000231156.1] WARNING, no entry stored in dbm for [ENSG00000286675.1] WARNING, no entry stored in dbm for [ENSG00000253158.1] WARNING, no entry stored in dbm for [ENSG00000271375.1] WARNING, no entry stored in dbm for [ENSG00000271620.1] WARNING, no entry stored in dbm for [ENSG00000261834.2] WARNING, no entry stored in dbm for [ENSG00000270864.1] WARNING, no entry stored in dbm for [ENSG00000223931.2] WARNING, no entry stored in dbm for [ENSG00000260464.1] WARNING, no entry stored in dbm for [ENSG00000204622.11] WARNING, no entry stored in dbm for [ENSG00000235290.1] WARNING, no entry stored in dbm for [ENSG00000206341.7] WARNING, no entry stored in dbm for [ENSG00000176318.8] WARNING, no entry stored in dbm for [ENSG00000270255.1] WARNING, no entry stored in dbm for [ENSG00000237781.3] WARNING, no entry stored in dbm for [ENSG00000279036.1] WARNING, no entry stored in dbm for [ENSG00000285108.1] WARNING, no entry stored in dbm for [ENSG00000253438.4] WARNING, no entry stored in dbm for [ENSG00000281103.2] WARNING, no entry stored in dbm for [ENSG00000224165.6] WARNING, no entry stored in dbm for [ENSG00000261195.1] WARNING, no entry stored in dbm for [ENSG00000285108.1] WARNING, no entry stored in dbm for [ENSG00000204623.9] WARNING, no entry stored in dbm for [ENSG00000280890.1] WARNING, no entry stored in dbm for [ENSG00000263883.1] WARNING, no entry stored in dbm for [ENSG00000281649.2] WARNING, no entry stored in dbm for [ENSG00000227288.3] WARNING, no entry stored in dbm for [ENSG00000186704.9] WARNING, no entry stored in dbm for [ENSG00000235192.1] WARNING, no entry stored in dbm for [ENSG00000245532.9] WARNING, no entry stored in dbm for [ENSG00000245384.2] WARNING, no entry stored in dbm for [ENSG00000270352.1] WARNING, no entry stored in dbm for [ENSG00000235673.1] WARNING, no entry stored in dbm for [ENSG00000249047.2] WARNING, no entry stored in dbm for [ENSG00000287774.1] WARNING, no entry stored in dbm for [ENSG00000207691.1] WARNING, no entry stored in dbm for [ENSG00000224287.2] WARNING, no entry stored in dbm for [ENSG00000233652.1] WARNING, no entry stored in dbm for [ENSG00000259755.1] WARNING, no entry stored in dbm for [ENSG00000226937.9] WARNING, no entry stored in dbm for [ENSG00000230681.1] WARNING, no entry stored in dbm for [ENSG00000224660.2] WARNING, no entry stored in dbm for [ENSG00000250033.5] WARNING, no entry stored in dbm for [ENSG00000250437.1] WARNING, no entry stored in dbm for [ENSG00000213671.3] WARNING, no entry stored in dbm for [ENSG00000182352.8] WARNING, no entry stored in dbm for [ENSG00000182352.8] WARNING, no entry stored in dbm for [ENSG00000262413.1] WARNING, no entry stored in dbm for [ENSG00000204177.10] WARNING, no entry stored in dbm for [ENSG00000243289.1] WARNING, no entry stored in dbm for [ENSG00000240205.3] WARNING, no entry stored in dbm for [ENSG00000257252.6] WARNING, no entry stored in dbm for [ENSG00000261187.1] WARNING, no entry stored in dbm for [ENSG00000231991.4] WARNING, no entry stored in dbm for [ENSG00000230006.7] WARNING, no entry stored in dbm for [ENSG00000232576.2] WARNING, no entry stored in dbm for [ENSG00000227619.3] WARNING, no entry stored in dbm for [ENSG00000285280.2] WARNING, no entry stored in dbm for [ENSG00000235582.2] WARNING, no entry stored in dbm for [ENSG00000215016.2] WARNING, no entry stored in dbm for [ENSG00000231703.2] WARNING, no entry stored in dbm for [ENSG00000274090.1] WARNING, no entry stored in dbm for [ENSG00000268628.2] WARNING, no entry stored in dbm for [ENSG00000244756.1] WARNING, no entry stored in dbm for [ENSG00000243423.1] WARNING, no entry stored in dbm for [ENSG00000280395.1] WARNING, no entry stored in dbm for [ENSG00000215022.7] WARNING, no entry stored in dbm for [ENSG00000233955.1] WARNING, no entry stored in dbm for [ENSG00000230869.1] WARNING, no entry stored in dbm for [ENSG00000230869.1] WARNING, no entry stored in dbm for [ENSG00000272140.2] WARNING, no entry stored in dbm for [ENSG00000250421.5] WARNING, no entry stored in dbm for [ENSG00000218052.5] WARNING, no entry stored in dbm for [ENSG00000223804.5] WARNING, no entry stored in dbm for [ENSG00000263590.2] WARNING, no entry stored in dbm for [ENSG00000223612.3] WARNING, no entry stored in dbm for [ENSG00000223931.2] WARNING, no entry stored in dbm for [ENSG00000224585.1] WARNING, no entry stored in dbm for [ENSG00000229930.1] WARNING, no entry stored in dbm for [ENSG00000243596.1] WARNING, no entry stored in dbm for [ENSG00000273156.2] WARNING, no entry stored in dbm for [ENSG00000260235.1] WARNING, no entry stored in dbm for [ENSG00000253284.2] WARNING, no entry stored in dbm for [ENSG00000267749.1] WARNING, no entry stored in dbm for [ENSG00000250643.1] WARNING, no entry stored in dbm for [ENSG00000287893.1] WARNING, no entry stored in dbm for [ENSG00000258324.2] WARNING, no entry stored in dbm for [ENSG00000232053.7] WARNING, no entry stored in dbm for [ENSG00000288077.1] WARNING, no entry stored in dbm for [ENSG00000257817.2] WARNING, no entry stored in dbm for [ENSG00000260693.1] WARNING, no entry stored in dbm for [ENSG00000250764.1] WARNING, no entry stored in dbm for [ENSG00000254668.1] WARNING, no entry stored in dbm for [ENSG00000260276.2] WARNING, no entry stored in dbm for [ENSG00000285106.2] WARNING, no entry stored in dbm for [ENSG00000270776.1] WARNING, no entry stored in dbm for [ENSG00000280394.1] WARNING, no entry stored in dbm for [ENSG00000284649.1] WARNING, no entry stored in dbm for [ENSG00000261273.1] WARNING, no entry stored in dbm for [ENSG00000267207.1] WARNING, no entry stored in dbm for [ENSG00000268650.3] WARNING, no entry stored in dbm for [ENSG00000274712.2] WARNING, no entry stored in dbm for [ENSG00000286045.1] WARNING, no entry stored in dbm for [ENSG00000248278.1] WARNING, no entry stored in dbm for [ENSG00000254610.3] WARNING, no entry stored in dbm for [ENSG00000241278.1] WARNING, no entry stored in dbm for [ENSG00000253507.5] WARNING, no entry stored in dbm for [ENSG00000271394.1] WARNING, no entry stored in dbm for [ENSG00000222240.1] * STAR-Fusion complete. See output: /tmp/nxf.9JQm0xfd57/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)