Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/954eb60089ff2963822197ca952fb5/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1_1.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/ea34fe03b43c8272a79b6e1b64261f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/45a8a3c95f859aec40650d46f16881/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/ea34fe03b43c8272a79b6e1b64261f/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/954eb60089ff2963822197ca952fb5/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.x1KggYDsQS/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary
-sample contains 49623633 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir -J /tmp/nxf.x1KggYDsQS/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.x1KggYDsQS/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[920000], rate=89320.39/min -building interval tree based on /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[910000], rate=81981.98/min -building interval tree based on /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[910000], rate=72703.06/min -building interval tree based on /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[910000], rate=66504.26/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir --filt_file /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
0.00 reads per min processed...
12000000.00 reads per min processed...
9000000.00 reads per min processed...
8000000.00 reads per min processed...
7500000.00 reads per min processed...
6000000.00 reads per min processed...
6000000.00 reads per min processed...
5333333.33 reads per min processed...
5400000.00 reads per min processed...
5000000.00 reads per min processed...
5076923.08 reads per min processed...
4500000.00 reads per min processed...
4333333.33 reads per min processed...
4200000.00 reads per min processed...
4090909.09 reads per min processed...
4173913.04 reads per min processed...
4080000.00 reads per min processed...
4153846.15 reads per min processed...
4071428.57 reads per min processed...
4137931.03 reads per min processed...
4344827.59 reads per min processed...
4400000.00 reads per min processed...
4451612.90 reads per min processed...
4500000.00 reads per min processed...
4411764.71 reads per min processed...
4457142.86 reads per min processed...
4378378.38 reads per min processed...
4421052.63 reads per min processed...
4350000.00 reads per min processed...
4390243.90 reads per min processed...
4428571.43 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.x1KggYDsQS/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -52996.431305
EM: Round [1] log likelihood: -52841.507743
EM: Round [2] log likelihood: -52777.336840
EM: Round [3] log likelihood: -52745.767675
EM: Round [4] log likelihood: -52728.771002
EM: Round [5] log likelihood: -52719.230889
EM: Round [6] log likelihood: -52713.722158
EM: Round [7] log likelihood: -52710.438669
EM: Round [8] log likelihood: -52708.405973
EM: Round [9] log likelihood: -52707.094497
EM: Round [10] log likelihood: -52706.212773
EM: Round [11] log likelihood: -52705.596902
EM: Round [12] log likelihood: -52705.152033
EM: Round [13] log likelihood: -52704.821402
EM: Round [14] log likelihood: -52704.569794
EM: Round [15] log likelihood: -52704.374555
EM: Round [16] log likelihood: -52704.220599
EM: Round [17] log likelihood: -52704.097555
EM: Round [18] log likelihood: -52703.998091
EM: Round [19] log likelihood: -52703.916896
EM: Round [20] log likelihood: -52703.850044
EM: Round [21] log likelihood: -52703.794580
EM: Round [22] log likelihood: -52703.748246
EM: Round [23] log likelihood: -52703.709295
EM: Round [24] log likelihood: -52703.676362
EM: Round [25] log likelihood: -52703.648366
EM: Round [26] log likelihood: -52703.624448
EM: Round [27] log likelihood: -52703.603916
EM: Round [28] log likelihood: -52703.586211
EM: Round [29] log likelihood: -52703.570880
EM: Round [30] log likelihood: -52703.557550
EM: Round [31] log likelihood: -52703.545914
EM: Round [32] log likelihood: -52703.535719
EM: Round [33] log likelihood: -52703.526754
EM: Round [34] log likelihood: -52703.518844
EM: Round [35] log likelihood: -52703.511841
EM: Round [36] log likelihood: -52703.505621
EM: Round [37] log likelihood: -52703.500079
EM: Round [38] log likelihood: -52703.495128
EM: Round [39] log likelihood: -52703.490690
EM: Round [40] log likelihood: -52703.486702
EM: Round [41] log likelihood: -52703.483108
EM: Round [42] log likelihood: -52703.479862
EM: Round [43] log likelihood: -52703.476922
EM: Round [44] log likelihood: -52703.474254
EM: Round [45] log likelihood: -52703.471826
EM: Round [46] log likelihood: -52703.469612
EM: Round [47] log likelihood: -52703.467589
EM: Round [48] log likelihood: -52703.465737
EM: Round [49] log likelihood: -52703.464038
EM: Round [50] log likelihood: -52703.462476
EM: Round [51] log likelihood: -52703.461039
EM: Round [52] log likelihood: -52703.459714
EM: Round [53] log likelihood: -52703.458489
EM: Round [54] log likelihood: -52703.457357
EM: Round [55] log likelihood: -52703.456308
EM: Round [56] log likelihood: -52703.455335
EM: Round [57] log likelihood: -52703.454431
EM: Round [58] log likelihood: -52703.453590
EM: Round [59] log likelihood: -52703.452807
EM: Round [60] log likelihood: -52703.452077
EM: Round [61] log likelihood: -52703.451396
EM: Round [62] log likelihood: -52703.450760
EM: Round [63] log likelihood: -52703.450164
EM: Round [64] log likelihood: -52703.449607
EM: Round [65] log likelihood: -52703.449086
EM: Round [66] log likelihood: -52703.448596
EM: Round [67] log likelihood: -52703.448137
EM: Round [68] log likelihood: -52703.447706
EM: Round [69] log likelihood: -52703.447300
EM: Round [70] log likelihood: -52703.446919
EM: Round [71] log likelihood: -52703.446560
EM: Round [72] log likelihood: -52703.446222
EM: Round [73] log likelihood: -52703.445903
EM: Round [74] log likelihood: -52703.445603
EM: Round [75] log likelihood: -52703.445320
EM: Round [76] log likelihood: -52703.445052
EM: Round [77] log likelihood: -52703.444799
EM: Round [78] log likelihood: -52703.444560
EM: Round [79] log likelihood: -52703.444335
EM: Round [80] log likelihood: -52703.444121
EM: Round [81] log likelihood: -52703.443919
EM: Round [82] log likelihood: -52703.443727
EM: Round [83] log likelihood: -52703.443546
EM: Round [84] log likelihood: -52703.443374
EM: Round [85] log likelihood: -52703.443212
EM: Round [86] log likelihood: -52703.443057
EM: Round [87] log likelihood: -52703.442911
EM: Round [88] log likelihood: -52703.442772
EM: Round [89] log likelihood: -52703.442640
EM: Round [90] log likelihood: -52703.442514
EM: Round [91] log likelihood: -52703.442395
EM: Round [92] log likelihood: -52703.442282
EM: Round [93] log likelihood: -52703.442175
EM: Round [94] log likelihood: -52703.442073
EM: Round [95] log likelihood: -52703.441976
EM: Stopping iterations at round 95 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -52951.855113
EM: Round [1] log likelihood: -52816.771758
EM: Round [2] log likelihood: -52763.183690
EM: Round [3] log likelihood: -52737.258272
EM: Round [4] log likelihood: -52723.440416
EM: Round [5] log likelihood: -52715.749141
EM: Round [6] log likelihood: -52711.347843
EM: Round [7] log likelihood: -52708.752358
EM: Round [8] log likelihood: -52707.165295
EM: Round [9] log likelihood: -52706.154823
EM: Round [10] log likelihood: -52705.484296
EM: Round [11] log likelihood: -52705.021448
EM: Round [12] log likelihood: -52704.690370
EM: Round [13] log likelihood: -52704.446123
EM: Round [14] log likelihood: -52704.261186
EM: Round [15] log likelihood: -52704.118103
EM: Round [16] log likelihood: -52704.005417
EM: Round [17] log likelihood: -52703.915356
EM: Round [18] log likelihood: -52703.842491
EM: Round [19] log likelihood: -52703.782926
EM: Round [20] log likelihood: -52703.733800
EM: Round [21] log likelihood: -52703.692970
EM: Round [22] log likelihood: -52703.658805
EM: Round [23] log likelihood: -52703.630044
EM: Round [24] log likelihood: -52703.605699
EM: Round [25] log likelihood: -52703.584989
EM: Round [26] log likelihood: -52703.567292
EM: Round [27] log likelihood: -52703.552105
EM: Round [28] log likelihood: -52703.539020
EM: Round [29] log likelihood: -52703.527707
EM: Round [30] log likelihood: -52703.517891
EM: Round [31] log likelihood: -52703.509346
EM: Round [32] log likelihood: -52703.501886
EM: Round [33] log likelihood: -52703.495353
EM: Round [34] log likelihood: -52703.489618
EM: Round [35] log likelihood: -52703.484569
EM: Round [36] log likelihood: -52703.480113
EM: Round [37] log likelihood: -52703.476172
EM: Round [38] log likelihood: -52703.472678
EM: Round [39] log likelihood: -52703.469574
EM: Round [40] log likelihood: -52703.466811
EM: Round [41] log likelihood: -52703.464345
EM: Round [42] log likelihood: -52703.462142
EM: Round [43] log likelihood: -52703.460170
EM: Round [44] log likelihood: -52703.458401
EM: Round [45] log likelihood: -52703.456811
EM: Round [46] log likelihood: -52703.455381
EM: Round [47] log likelihood: -52703.454091
EM: Round [48] log likelihood: -52703.452927
EM: Round [49] log likelihood: -52703.451875
EM: Round [50] log likelihood: -52703.450923
EM: Round [51] log likelihood: -52703.450059
EM: Round [52] log likelihood: -52703.449275
EM: Round [53] log likelihood: -52703.448562
EM: Round [54] log likelihood: -52703.447913
EM: Round [55] log likelihood: -52703.447322
EM: Round [56] log likelihood: -52703.446782
EM: Round [57] log likelihood: -52703.446289
EM: Round [58] log likelihood: -52703.445838
EM: Round [59] log likelihood: -52703.445425
EM: Round [60] log likelihood: -52703.445047
EM: Round [61] log likelihood: -52703.444699
EM: Round [62] log likelihood: -52703.444379
EM: Round [63] log likelihood: -52703.444085
EM: Round [64] log likelihood: -52703.443814
EM: Round [65] log likelihood: -52703.443565
EM: Round [66] log likelihood: -52703.443334
EM: Round [67] log likelihood: -52703.443121
EM: Round [68] log likelihood: -52703.442924
EM: Round [69] log likelihood: -52703.442742
EM: Round [70] log likelihood: -52703.442573
EM: Round [71] log likelihood: -52703.442416
EM: Round [72] log likelihood: -52703.442270
EM: Round [73] log likelihood: -52703.442135
EM: Round [74] log likelihood: -52703.442009
EM: Round [75] log likelihood: -52703.441892
EM: Round [76] log likelihood: -52703.441782
EM: Round [77] log likelihood: -52703.441680
EM: Round [78] log likelihood: -52703.441584
EM: Stopping iterations at round 78 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 49623633 > /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir > /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir --annotate /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir
-done, see /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 278, filtered: 3166)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.x1KggYDsQS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.x1KggYDsQS/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000240498.9]
WARNING, no entry stored in dbm for [ENSG00000181126.13]
WARNING, no entry stored in dbm for [ENSG00000255108.1]
WARNING, no entry stored in dbm for [ENSG00000251143.1]
WARNING, no entry stored in dbm for [ENSG00000205959.4]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000205853.12]
WARNING, no entry stored in dbm for [ENSG00000212939.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000212939.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000228655.7]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000265788.2]
WARNING, no entry stored in dbm for [ENSG00000235217.6]
WARNING, no entry stored in dbm for [ENSG00000227598.1]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000239809.1]
WARNING, no entry stored in dbm for [ENSG00000270830.1]
WARNING, no entry stored in dbm for [ENSG00000257074.3]
WARNING, no entry stored in dbm for [ENSG00000241030.1]
WARNING, no entry stored in dbm for [ENSG00000206585.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000270722.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000273768.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000277918.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000206737.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000206888.1]
WARNING, no entry stored in dbm for [ENSG00000264940.5]
WARNING, no entry stored in dbm for [ENSG00000206975.1]
WARNING, no entry stored in dbm for [ENSG00000264940.5]
WARNING, no entry stored in dbm for [ENSG00000207389.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000207513.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000206588.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000206596.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000207005.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000206652.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000240606.3]
WARNING, no entry stored in dbm for [ENSG00000266828.2]
WARNING, no entry stored in dbm for [ENSG00000200312.1]
WARNING, no entry stored in dbm for [ENSG00000222969.1]
WARNING, no entry stored in dbm for [ENSG00000127957.18]
WARNING, no entry stored in dbm for [ENSG00000237000.1]
WARNING, no entry stored in dbm for [ENSG00000285681.2]
WARNING, no entry stored in dbm for [ENSG00000239636.1]
WARNING, no entry stored in dbm for [ENSG00000273643.1]
WARNING, no entry stored in dbm for [ENSG00000237468.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000273986.1]
WARNING, no entry stored in dbm for [ENSG00000224699.9]
WARNING, no entry stored in dbm for [ENSG00000249878.1]
WARNING, no entry stored in dbm for [ENSG00000265413.1]
WARNING, no entry stored in dbm for [ENSG00000233098.9]
WARNING, no entry stored in dbm for [ENSG00000288663.1]
WARNING, no entry stored in dbm for [ENSG00000224110.3]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000204241.8]
WARNING, no entry stored in dbm for [ENSG00000230415.1]
WARNING, no entry stored in dbm for [ENSG00000280734.3]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000237750.2]
WARNING, no entry stored in dbm for [ENSG00000244040.7]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000245067.7]
WARNING, no entry stored in dbm for [ENSG00000226239.2]
WARNING, no entry stored in dbm for [ENSG00000243478.9]
WARNING, no entry stored in dbm for [ENSG00000281383.1]
WARNING, no entry stored in dbm for [ENSG00000280800.1]
WARNING, no entry stored in dbm for [ENSG00000281181.1]
WARNING, no entry stored in dbm for [ENSG00000280614.1]
WARNING, no entry stored in dbm for [ENSG00000229321.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234709.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000228604.3]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000280013.1]
WARNING, no entry stored in dbm for [ENSG00000080947.15]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000267280.5]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000251562.8]
WARNING, no entry stored in dbm for [ENSG00000238013.1]
WARNING, no entry stored in dbm for [ENSG00000239899.3]
WARNING, no entry stored in dbm for [ENSG00000242158.3]
WARNING, no entry stored in dbm for [ENSG00000229807.12]
WARNING, no entry stored in dbm for [ENSG00000231649.3]
WARNING, no entry stored in dbm for [ENSG00000224905.7]
WARNING, no entry stored in dbm for [ENSG00000215559.8]
WARNING, no entry stored in dbm for [ENSG00000274502.1]
WARNING, no entry stored in dbm for [ENSG00000215559.8]
WARNING, no entry stored in dbm for [ENSG00000272574.1]
WARNING, no entry stored in dbm for [ENSG00000218426.5]
WARNING, no entry stored in dbm for [ENSG00000236667.1]
WARNING, no entry stored in dbm for [ENSG00000272668.2]
WARNING, no entry stored in dbm for [ENSG00000287991.1]
WARNING, no entry stored in dbm for [ENSG00000271989.1]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000283345.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000261441.1]
WARNING, no entry stored in dbm for [ENSG00000251244.2]
WARNING, no entry stored in dbm for [ENSG00000286935.1]
WARNING, no entry stored in dbm for [ENSG00000259511.3]
WARNING, no entry stored in dbm for [ENSG00000242299.1]
WARNING, no entry stored in dbm for [ENSG00000249072.1]
WARNING, no entry stored in dbm for [ENSG00000268509.2]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
* STAR-Fusion complete. See output: /tmp/nxf.x1KggYDsQS/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)