Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT A673_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT A673_FFPE_RNA_0001_B23LG7FLT4_1.md.bam --METRICS_FILE A673_FFPE_RNA_0001_B23LG7FLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:32:17.690 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:32:17 GMT 2026] MarkDuplicates --INPUT A673_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT A673_FFPE_RNA_0001_B23LG7FLT4_1.md.bam --METRICS_FILE A673_FFPE_RNA_0001_B23LG7FLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:32:17 GMT 2026] Executing as ?@nf-8f2e9263d06d21050652c9fc2b0879ff-88110-8mqcd on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:32:17 MarkDuplicates Start of doWork freeMemory: 105826440; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:32:17 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:32:17 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,293,658
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 2536 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,798,582
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 5599 as yet unmatched pairs. 1003 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,525,976
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 7310 as yet unmatched pairs. 217 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:8,866,333
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 10021 as yet unmatched pairs. 709 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,054,646
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 11692 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:12,327,718
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 13961 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:16,315,219
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 16115 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:19,112,524
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 18256 as yet unmatched pairs. 353 records in RAM.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:20,770,941
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 20764 as yet unmatched pairs. 796 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:23,079,615
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 23661 as yet unmatched pairs. 1589 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:24,814,185
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 24633 as yet unmatched pairs. 545 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:26,772,615
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 26446 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:28,334,537
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 28395 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:30,936,752
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 30894 as yet unmatched pairs. 723 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:32,334,885
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 33286 as yet unmatched pairs. 950 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:35,190,841
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 36019 as yet unmatched pairs. 1534 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:35,973,467
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 37205 as yet unmatched pairs. 379 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:38,019,100
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 39310 as yet unmatched pairs. 387 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:40,069,698
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 41257 as yet unmatched pairs. 155 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:42,930,822
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 43476 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:44,412,364
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 45896 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:46,030,147
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 47761 as yet unmatched pairs. 235 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:51,790,560
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 53018 as yet unmatched pairs. 3364 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:51,878,411
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 53722 as yet unmatched pairs. 1989 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:55,103,876
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 54309 as yet unmatched pairs. 381 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:62,552,740
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 56059 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:67,430,019
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 58440 as yet unmatched pairs. 535 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:77,956,483
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 60075 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:90,717,044
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 63621 as yet unmatched pairs. 1633 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:100,058,702
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 64270 as yet unmatched pairs. 401 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:109,280,843
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 67226 as yet unmatched pairs. 1363 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:110,603,655
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 69014 as yet unmatched pairs. 1022 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:113,981,367
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 71733 as yet unmatched pairs. 1640 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:116,388,636
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 73880 as yet unmatched pairs. 1752 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:119,735,302
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 75457 as yet unmatched pairs. 1406 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:143,680,361
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 75834 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:146,376,834
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 77011 as yet unmatched pairs. 94 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:149,488,121
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 78177 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:149,860,852
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 79447 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,226
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 81983 as yet unmatched pairs. 632 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:151,406,226
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 83584 as yet unmatched pairs. 201 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:153,665,255
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 87123 as yet unmatched pairs. 2289 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,172,260
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 90289 as yet unmatched pairs. 3502 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:154,961,006
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 89069 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:155,415,807
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 91096 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,076,904
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 93947 as yet unmatched pairs. 992 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:156,767,864
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 95471 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:161,042,122
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 97832 as yet unmatched pairs. 557 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:165,651,027
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 101625 as yet unmatched pairs. 2281 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:171,571,349
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 101797 as yet unmatched pairs. 462 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:180,014,276
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 103631 as yet unmatched pairs. 289 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:183,900,146
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 105933 as yet unmatched pairs. 484 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:186,023,054
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 108587 as yet unmatched pairs. 1035 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:186,325,808
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 110099 as yet unmatched pairs. 653 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:193,152,381
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 111644 as yet unmatched pairs. 393 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:201,317,668
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 115063 as yet unmatched pairs. 1854 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:202,746,207
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 116444 as yet unmatched pairs. 1077 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:205,810,351
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 117428 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:214,401,717
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 119879 as yet unmatched pairs. 716 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:222,673,390
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 121347 as yet unmatched pairs. 355 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:226,064,404
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 125374 as yet unmatched pairs. 2435 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:228,323,402
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 125301 as yet unmatched pairs. 123 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:235,132,404
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 127798 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:244,856,547
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 130959 as yet unmatched pairs. 1230 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:1,635,447
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 131963 as yet unmatched pairs. 129172 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr2:9,003,550
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 134386 as yet unmatched pairs. 131534 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:11,447,710
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 136451 as yet unmatched pairs. 133562 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:23,869,712
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 138638 as yet unmatched pairs. 135707 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:26,283,003
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 140842 as yet unmatched pairs. 137871 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:27,233,698
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 143846 as yet unmatched pairs. 140843 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:28,778,913
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 148696 as yet unmatched pairs. 145675 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,230
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 147204 as yet unmatched pairs. 143758 records in RAM.
INFO 2026-06-08 08:34:28 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 437719 as yet unmatched pairs. 124813 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,358
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 1012277 as yet unmatched pairs. 88512 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 1083641 as yet unmatched pairs. 83868 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:36,902,729
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 1146844 as yet unmatched pairs. 79547 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:42,288,291
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 1145802 as yet unmatched pairs. 78471 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:44,201,779
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 1143153 as yet unmatched pairs. 75793 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:53,923,387
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 1141459 as yet unmatched pairs. 74064 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:55,418,841
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 1140250 as yet unmatched pairs. 72821 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:62,147,186
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 1137124 as yet unmatched pairs. 69647 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:69,102,878
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 1136723 as yet unmatched pairs. 69192 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:72,465,205
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 1133781 as yet unmatched pairs. 66209 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:74,214,126
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 1134166 as yet unmatched pairs. 66562 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:85,371,085
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 1129219 as yet unmatched pairs. 61564 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:86,994,834
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 1127263 as yet unmatched pairs. 59579 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:96,364,558
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 1126195 as yet unmatched pairs. 58471 records in RAM.
INFO 2026-06-08 08:34:52 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:101,269,229
INFO 2026-06-08 08:34:52 MarkDuplicates Tracking 1124287 as yet unmatched pairs. 56511 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:108,751,891
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 1123382 as yet unmatched pairs. 55575 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:109,585,829
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 1121609 as yet unmatched pairs. 53790 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:110,649,263
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 1120581 as yet unmatched pairs. 52756 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:112,658,876
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 1119205 as yet unmatched pairs. 51349 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:127,070,593
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 1117423 as yet unmatched pairs. 49524 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:131,492,240
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 1115030 as yet unmatched pairs. 47075 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:144,399,810
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 1114650 as yet unmatched pairs. 46635 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:152,735,026
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 1112389 as yet unmatched pairs. 44311 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:169,636,091
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 1109833 as yet unmatched pairs. 41689 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:174,719,882
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 1107814 as yet unmatched pairs. 39622 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:178,384,146
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 1105780 as yet unmatched pairs. 37549 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:189,458,635
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 1104056 as yet unmatched pairs. 35777 records in RAM.
INFO 2026-06-08 08:35:14 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:197,487,170
INFO 2026-06-08 08:35:14 MarkDuplicates Tracking 1102958 as yet unmatched pairs. 34643 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:202,265,857
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 1100865 as yet unmatched pairs. 32503 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:208,243,439
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 1099368 as yet unmatched pairs. 30957 records in RAM.
INFO 2026-06-08 08:35:19 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,979
INFO 2026-06-08 08:35:19 MarkDuplicates Tracking 1110004 as yet unmatched pairs. 41514 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,343
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 1102294 as yet unmatched pairs. 33778 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,381,069
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 1106735 as yet unmatched pairs. 38203 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,686
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 1099021 as yet unmatched pairs. 30470 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,574
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 1102773 as yet unmatched pairs. 34190 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,267
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 1092669 as yet unmatched pairs. 24067 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:216,633,873
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 1087183 as yet unmatched pairs. 18535 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:218,661,117
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 1083062 as yet unmatched pairs. 14381 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:222,232,229
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 1081150 as yet unmatched pairs. 12440 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:229,774,142
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 1078846 as yet unmatched pairs. 10054 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:231,459,077
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 1079691 as yet unmatched pairs. 10878 records in RAM.
INFO 2026-06-08 08:35:36 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:235,807,239
INFO 2026-06-08 08:35:36 MarkDuplicates Tracking 1075053 as yet unmatched pairs. 6202 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:240,740,338
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 1075735 as yet unmatched pairs. 6825 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:241,262,901
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 1071154 as yet unmatched pairs. 2222 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr3:9,474,490
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 1068589 as yet unmatched pairs. 48036 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:12,597,430
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 1068135 as yet unmatched pairs. 47535 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:15,738,580
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 1064426 as yet unmatched pairs. 43779 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:31,579,939
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 1063509 as yet unmatched pairs. 42820 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:39,407,689
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 1061544 as yet unmatched pairs. 40806 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:47,121,684
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 1058959 as yet unmatched pairs. 38177 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:48,609,248
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 1056818 as yet unmatched pairs. 35988 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:49,972,137
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 1055042 as yet unmatched pairs. 34172 records in RAM.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:52,634,796
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 1052627 as yet unmatched pairs. 31716 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:68,636,346
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 1050519 as yet unmatched pairs. 29546 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:100,025,210
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 1048691 as yet unmatched pairs. 27647 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:111,109,820
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 1046840 as yet unmatched pairs. 25765 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:121,698,546
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 1045031 as yet unmatched pairs. 23901 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:127,004,608
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 1043109 as yet unmatched pairs. 21915 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:129,171,686
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 1042308 as yet unmatched pairs. 21077 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:134,188,845
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 1038809 as yet unmatched pairs. 17527 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:142,333,031
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 1036927 as yet unmatched pairs. 15586 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:150,742,543
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 1035100 as yet unmatched pairs. 13707 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:160,433,120
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 1033260 as yet unmatched pairs. 11816 records in RAM.
INFO 2026-06-08 08:36:12 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:179,401,299
INFO 2026-06-08 08:36:12 MarkDuplicates Tracking 1031676 as yet unmatched pairs. 10189 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:184,177,061
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 1029676 as yet unmatched pairs. 8148 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:185,586,478
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 1027416 as yet unmatched pairs. 5852 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:190,604,186
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 1026687 as yet unmatched pairs. 5072 records in RAM.
INFO 2026-06-08 08:36:19 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:196,238,612
INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 1023736 as yet unmatched pairs. 2049 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:851,818
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 1021152 as yet unmatched pairs. 36223 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:1,731,191
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 1021743 as yet unmatched pairs. 36794 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:2,497,058
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 1017468 as yet unmatched pairs. 32488 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr4:5,753,870
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 1014490 as yet unmatched pairs. 29456 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:13,603,586
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 1012420 as yet unmatched pairs. 27326 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:22,727,499
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 1010263 as yet unmatched pairs. 25108 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr4:39,221,305
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 1008349 as yet unmatched pairs. 23140 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:44,717,174
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 1006439 as yet unmatched pairs. 21192 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:70,825,351
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 1004724 as yet unmatched pairs. 19425 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:82,856,991
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 1002735 as yet unmatched pairs. 17398 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:94,250,770
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 1000600 as yet unmatched pairs. 15222 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:103,158,664
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 999175 as yet unmatched pairs. 13731 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:109,818,013
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 997059 as yet unmatched pairs. 11575 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:122,254,808
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 995185 as yet unmatched pairs. 9641 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:133,152,340
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 993520 as yet unmatched pairs. 7922 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:145,138,582
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 991307 as yet unmatched pairs. 5665 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:156,949,956
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 989417 as yet unmatched pairs. 3728 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:177,341,514
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 987517 as yet unmatched pairs. 1763 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr5:447,545
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 985619 as yet unmatched pairs. 58896 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:10,254,677
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 984922 as yet unmatched pairs. 58150 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:14,498,215
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 981525 as yet unmatched pairs. 54724 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:21,354,758
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 978962 as yet unmatched pairs. 52124 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:36,039,511
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 981365 as yet unmatched pairs. 54497 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:38,482,180
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 975773 as yet unmatched pairs. 48870 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:54,518,955
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 974966 as yet unmatched pairs. 48013 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:64,977,157
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 971746 as yet unmatched pairs. 44727 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:70,067,081
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 969652 as yet unmatched pairs. 42595 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:71,560,211
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 968745 as yet unmatched pairs. 41660 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:75,355,179
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 967221 as yet unmatched pairs. 40104 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:82,275,153
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 964877 as yet unmatched pairs. 37707 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:98,876,399
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 962992 as yet unmatched pairs. 35762 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:116,051,991
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 961047 as yet unmatched pairs. 33764 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:131,719,317
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 959182 as yet unmatched pairs. 31854 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr5:134,784,420
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 957315 as yet unmatched pairs. 29958 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:138,518,732
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 955722 as yet unmatched pairs. 28339 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:140,506,931
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 953538 as yet unmatched pairs. 26066 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:140,876,785
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 951622 as yet unmatched pairs. 24118 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:141,224,881
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 949582 as yet unmatched pairs. 22059 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:141,495,162
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 948843 as yet unmatched pairs. 21274 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:146,470,671
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 945372 as yet unmatched pairs. 17768 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,444,281
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 944147 as yet unmatched pairs. 16514 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:154,815,381
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 940992 as yet unmatched pairs. 13331 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:168,199,822
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 939271 as yet unmatched pairs. 11567 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,764
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 951559 as yet unmatched pairs. 23830 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:172,840,676
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 935849 as yet unmatched pairs. 8093 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:177,307,374
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 933651 as yet unmatched pairs. 5863 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:178,210,162
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 932719 as yet unmatched pairs. 4908 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:179,869,814
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 929488 as yet unmatched pairs. 1644 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr6:3,154,401
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 928409 as yet unmatched pairs. 63236 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:7,231,603
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 926148 as yet unmatched pairs. 60936 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:17,502,125
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 923380 as yet unmatched pairs. 58125 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:26,020,776
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 922061 as yet unmatched pairs. 56768 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr6:26,188,861
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 922992 as yet unmatched pairs. 57671 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 2s. Last read position: chr6:26,272,972
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 918271 as yet unmatched pairs. 52912 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:27,814,500
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 919097 as yet unmatched pairs. 53712 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:27,892,859
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 913828 as yet unmatched pairs. 48427 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:30,664,833
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 911269 as yet unmatched pairs. 45851 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:31,627,933
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 910198 as yet unmatched pairs. 44746 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:31,732,247
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 907340 as yet unmatched pairs. 41858 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:31,964,079
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 905031 as yet unmatched pairs. 39514 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,275
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 903256 as yet unmatched pairs. 37708 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:34,392,269
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 900765 as yet unmatched pairs. 35194 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:36,981,626
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 899479 as yet unmatched pairs. 33868 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:42,228,278
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 896237 as yet unmatched pairs. 30584 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:43,355,867
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 894345 as yet unmatched pairs. 28658 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:44,265,231
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 892146 as yet unmatched pairs. 26438 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:56,166,949
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 890809 as yet unmatched pairs. 25001 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:73,519,494
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 889411 as yet unmatched pairs. 23564 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:83,211,901
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 886617 as yet unmatched pairs. 20726 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:89,662,809
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 884451 as yet unmatched pairs. 18527 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:101,399,331
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 882739 as yet unmatched pairs. 16788 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:110,960,422
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 881001 as yet unmatched pairs. 14989 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:122,432,118
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 878535 as yet unmatched pairs. 12480 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr6:132,771,067
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 876597 as yet unmatched pairs. 10510 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:142,198,584
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 874532 as yet unmatched pairs. 8427 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr6:151,351,295
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 872662 as yet unmatched pairs. 6516 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:158,767,034
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 871280 as yet unmatched pairs. 5080 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:161,165,639
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 868425 as yet unmatched pairs. 2204 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr7:193,389
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 866306 as yet unmatched pairs. 58518 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:2,380,504
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 863583 as yet unmatched pairs. 55758 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:5,359,510
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 861475 as yet unmatched pairs. 53608 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,544
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 862183 as yet unmatched pairs. 54268 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:6,805,044
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 856906 as yet unmatched pairs. 48958 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:23,342,180
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 855465 as yet unmatched pairs. 47462 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:30,382,551
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 852746 as yet unmatched pairs. 44685 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:40,078,753
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 851024 as yet unmatched pairs. 42928 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:44,675,162
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 848875 as yet unmatched pairs. 40747 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:56,079,792
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 847044 as yet unmatched pairs. 38894 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:73,077,512
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 844962 as yet unmatched pairs. 36768 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:74,243,146
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 844362 as yet unmatched pairs. 36149 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:75,425,142
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 842116 as yet unmatched pairs. 33885 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:77,840,277
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 840248 as yet unmatched pairs. 31980 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:92,002,423
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 838356 as yet unmatched pairs. 30047 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr7:94,663,580
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 838219 as yet unmatched pairs. 29879 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:98,953,313
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 834364 as yet unmatched pairs. 25992 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,106,333
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 832180 as yet unmatched pairs. 23782 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,867,498
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 830944 as yet unmatched pairs. 22520 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:103,277,754
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 827870 as yet unmatched pairs. 19423 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:107,960,466
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 826298 as yet unmatched pairs. 17798 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:122,304,028
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 826445 as yet unmatched pairs. 17891 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:128,074,666
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 823228 as yet unmatched pairs. 14646 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:130,203,802
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 820919 as yet unmatched pairs. 12286 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:138,504,337
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 819674 as yet unmatched pairs. 10998 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:141,652,815
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 816240 as yet unmatched pairs. 7545 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:149,004,199
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 815106 as yet unmatched pairs. 6365 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:151,082,371
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 812321 as yet unmatched pairs. 3560 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 65s. Last read position: chr7:156,952,570
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 809919 as yet unmatched pairs. 1106 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 2s. Last read position: chr8:9,776,659
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 807707 as yet unmatched pairs. 46601 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:13,102,824
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 805630 as yet unmatched pairs. 44478 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:22,176,228
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 803598 as yet unmatched pairs. 42407 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr8:23,288,534
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 801430 as yet unmatched pairs. 40217 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:26,653,380
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 803067 as yet unmatched pairs. 41836 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:33,389,192
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 797312 as yet unmatched pairs. 36049 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr8:37,966,062
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 795807 as yet unmatched pairs. 34515 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:38,418,291
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 793446 as yet unmatched pairs. 32142 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr8:42,470,244
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 790570 as yet unmatched pairs. 29236 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:47,944,010
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 788980 as yet unmatched pairs. 27607 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:56,962,272
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 786410 as yet unmatched pairs. 25005 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:69,761,762
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 786286 as yet unmatched pairs. 24839 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:80,064,550
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 782611 as yet unmatched pairs. 21124 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:100,704,362
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 782136 as yet unmatched pairs. 20608 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:123,019,240
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 779074 as yet unmatched pairs. 17505 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,631
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 779820 as yet unmatched pairs. 18218 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:140,700,938
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 774608 as yet unmatched pairs. 12967 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,598,908
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 771957 as yet unmatched pairs. 10285 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:143,872,188
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 769824 as yet unmatched pairs. 8126 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:144,108,682
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 767128 as yet unmatched pairs. 5404 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:144,435,899
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 765461 as yet unmatched pairs. 3707 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:144,932,268
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 762039 as yet unmatched pairs. 252 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 2s. Last read position: chr9:9,442,165
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 759882 as yet unmatched pairs. 47336 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:21,816,718
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 758347 as yet unmatched pairs. 45763 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:34,371,383
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 756106 as yet unmatched pairs. 43485 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 2s. Last read position: chr9:35,660,847
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 754002 as yet unmatched pairs. 41360 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:37,776,318
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 751644 as yet unmatched pairs. 38951 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr9:78,300,624
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 751198 as yet unmatched pairs. 38463 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:87,641,975
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 751110 as yet unmatched pairs. 38339 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:92,247,408
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 746297 as yet unmatched pairs. 33499 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:95,978,117
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 743867 as yet unmatched pairs. 31034 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:106,926,536
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 741947 as yet unmatched pairs. 29077 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:113,199,931
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 739781 as yet unmatched pairs. 26884 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:120,407,012
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 737681 as yet unmatched pairs. 24765 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:123,104,658
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 735431 as yet unmatched pairs. 22486 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:127,788,020
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 733514 as yet unmatched pairs. 20528 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:128,588,886
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 731366 as yet unmatched pairs. 18360 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:129,042,319
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 729090 as yet unmatched pairs. 16049 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:130,878,545
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 728326 as yet unmatched pairs. 15259 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:132,014,426
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 725295 as yet unmatched pairs. 12188 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:134,034,809
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 725048 as yet unmatched pairs. 11912 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:136,209,109
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 720796 as yet unmatched pairs. 7627 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:136,671,979
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 719127 as yet unmatched pairs. 5946 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:137,199,144
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 715427 as yet unmatched pairs. 2224 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr10:632,216
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 713149 as yet unmatched pairs. 44088 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr10:5,880,482
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 710904 as yet unmatched pairs. 41809 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:13,492,715
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 708960 as yet unmatched pairs. 39842 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr10:21,730,866
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 707082 as yet unmatched pairs. 37929 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr10:27,170,812
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 705548 as yet unmatched pairs. 36375 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:32,031,171
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 703960 as yet unmatched pairs. 34770 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:35,044,657
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 701530 as yet unmatched pairs. 32324 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:45,787,100
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 699234 as yet unmatched pairs. 29995 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:59,324,068
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 697663 as yet unmatched pairs. 28386 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:68,691,677
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 695757 as yet unmatched pairs. 26456 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:70,409,436
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 694108 as yet unmatched pairs. 24780 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:73,791,963
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 691908 as yet unmatched pairs. 22558 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:79,938,016
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 689600 as yet unmatched pairs. 20217 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:89,007,835
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 688061 as yet unmatched pairs. 18642 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:94,593,547
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 686148 as yet unmatched pairs. 16688 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:98,423,818
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 684121 as yet unmatched pairs. 14645 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:101,810,187
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 682008 as yet unmatched pairs. 12508 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:103,089,683
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 679860 as yet unmatched pairs. 10347 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:112,464,643
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 677799 as yet unmatched pairs. 8257 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:119,056,786
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 675932 as yet unmatched pairs. 6369 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:124,942,638
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 673885 as yet unmatched pairs. 4292 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:128,111,740
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 672385 as yet unmatched pairs. 2777 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 2s. Last read position: chr11:212,458
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 669923 as yet unmatched pairs. 79054 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:2,395,433
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 667677 as yet unmatched pairs. 76785 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:6,629,741
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 665172 as yet unmatched pairs. 74264 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:11,353,019
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 662895 as yet unmatched pairs. 71967 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:27,498,663
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 662025 as yet unmatched pairs. 71054 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:32,976,351
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 659487 as yet unmatched pairs. 68498 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:34,090,561
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 664157 as yet unmatched pairs. 73149 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:40,114,781
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 655571 as yet unmatched pairs. 64538 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:45,805,871
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 653372 as yet unmatched pairs. 62311 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:46,679,413
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 651152 as yet unmatched pairs. 60063 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:47,173,434
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 649744 as yet unmatched pairs. 58632 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:47,584,440
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 646912 as yet unmatched pairs. 55784 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:57,425,615
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 645481 as yet unmatched pairs. 54347 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:60,922,251
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 642836 as yet unmatched pairs. 51681 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:61,811,031
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 643052 as yet unmatched pairs. 51863 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:62,520,131
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 638545 as yet unmatched pairs. 47336 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:62,720,107
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 636884 as yet unmatched pairs. 45666 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 2s. Last read position: chr11:63,904,933
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 634350 as yet unmatched pairs. 43116 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:64,766,030
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 632257 as yet unmatched pairs. 40996 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:65,183,518
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 629378 as yet unmatched pairs. 38101 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr11:65,654,792
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 628923 as yet unmatched pairs. 37612 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:66,265,195
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 624684 as yet unmatched pairs. 33344 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:66,690,073
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 622379 as yet unmatched pairs. 31028 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:67,586,486
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 620911 as yet unmatched pairs. 29546 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,300
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 626647 as yet unmatched pairs. 35258 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:69,648,118
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 635068 as yet unmatched pairs. 43672 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,495
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 613636 as yet unmatched pairs. 22225 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:74,906,413
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 611083 as yet unmatched pairs. 19648 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:78,113,951
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 610416 as yet unmatched pairs. 18965 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:87,220,624
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 607816 as yet unmatched pairs. 16321 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:102,111,048
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 607742 as yet unmatched pairs. 16225 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:108,161,452
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 603452 as yet unmatched pairs. 11912 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:114,252,781
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 601230 as yet unmatched pairs. 9673 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:118,502,403
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 599577 as yet unmatched pairs. 8003 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:119,095,282
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 597657 as yet unmatched pairs. 6061 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,171
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 598258 as yet unmatched pairs. 6644 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr11:128,972,759
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 593460 as yet unmatched pairs. 1774 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 3s. Last read position: chr12:812,369
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 591590 as yet unmatched pairs. 73201 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr12:4,556,359
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 589285 as yet unmatched pairs. 70865 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:6,729,411
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 587484 as yet unmatched pairs. 69041 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:6,944,076
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 586508 as yet unmatched pairs. 68050 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:11,429,931
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 583312 as yet unmatched pairs. 64832 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:16,576,501
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 581572 as yet unmatched pairs. 63078 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:29,660,841
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 579409 as yet unmatched pairs. 60890 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:44,523,415
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 579709 as yet unmatched pairs. 61170 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:45,730,085
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 576439 as yet unmatched pairs. 57878 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:48,776,449
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 573425 as yet unmatched pairs. 54852 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,016
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 574302 as yet unmatched pairs. 55713 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:49,323,340
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 570526 as yet unmatched pairs. 51922 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:50,537,290
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 567860 as yet unmatched pairs. 49239 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:53,297,879
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 567771 as yet unmatched pairs. 49116 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:54,028,873
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 563903 as yet unmatched pairs. 45238 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:54,516,272
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 564802 as yet unmatched pairs. 46123 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:56,128,296
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 560138 as yet unmatched pairs. 41435 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr12:56,600,237
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 558130 as yet unmatched pairs. 39415 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr12:57,003,556
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 555978 as yet unmatched pairs. 37256 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr12:57,206,651
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 553863 as yet unmatched pairs. 35120 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:57,532,575
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 552279 as yet unmatched pairs. 33530 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:64,445,077
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 550007 as yet unmatched pairs. 31236 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:69,574,777
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 547911 as yet unmatched pairs. 29118 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:76,067,447
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 548431 as yet unmatched pairs. 29626 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:93,410,830
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 545900 as yet unmatched pairs. 27074 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:98,598,673
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 542439 as yet unmatched pairs. 23589 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:104,304,702
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 540513 as yet unmatched pairs. 21634 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:110,019,147
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 538380 as yet unmatched pairs. 19483 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr12:111,665,746
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 536159 as yet unmatched pairs. 17242 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 2s. Last read position: chr12:113,268,804
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 534286 as yet unmatched pairs. 15351 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:119,735,194
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 532127 as yet unmatched pairs. 13168 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:121,004,382
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 529971 as yet unmatched pairs. 10992 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:122,603,135
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 527789 as yet unmatched pairs. 8792 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:124,336,817
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 525976 as yet unmatched pairs. 6953 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:130,875,894
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 525438 as yet unmatched pairs. 6401 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:132,583,085
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 521136 as yet unmatched pairs. 2087 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr13:19,993,156
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 522537 as yet unmatched pairs. 29620 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr13:23,335,790
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 517076 as yet unmatched pairs. 24147 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr13:27,621,915
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 516315 as yet unmatched pairs. 23358 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr13:32,536,036
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 513781 as yet unmatched pairs. 20800 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr13:39,013,595
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 511638 as yet unmatched pairs. 18629 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr13:45,965,280
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 509745 as yet unmatched pairs. 16708 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr13:48,233,363
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 507583 as yet unmatched pairs. 14532 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr13:57,633,755
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 505606 as yet unmatched pairs. 12529 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr13:77,719,597
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 505177 as yet unmatched pairs. 12073 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr13:98,015,551
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 501921 as yet unmatched pairs. 8793 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr13:102,244,032
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 498956 as yet unmatched pairs. 5813 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr13:109,785,633
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 497662 as yet unmatched pairs. 4499 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr13:113,320,408
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 494329 as yet unmatched pairs. 1148 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr14:21,092,287
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 492242 as yet unmatched pairs. 41062 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:21,523,462
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 490708 as yet unmatched pairs. 39515 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:23,055,072
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 487524 as yet unmatched pairs. 36323 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr14:24,184,714
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 485799 as yet unmatched pairs. 34581 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:31,128,852
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 483572 as yet unmatched pairs. 32335 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:39,122,495
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 481494 as yet unmatched pairs. 30241 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,741
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 479797 as yet unmatched pairs. 28513 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:50,729,690
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 478530 as yet unmatched pairs. 27215 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:55,637,777
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 476472 as yet unmatched pairs. 25145 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:60,982,628
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 474495 as yet unmatched pairs. 23158 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:64,460,334
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 472286 as yet unmatched pairs. 20934 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:69,453,247
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 470603 as yet unmatched pairs. 19231 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:73,851,919
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 468379 as yet unmatched pairs. 16993 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:77,027,145
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 466232 as yet unmatched pairs. 14838 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 3s. Last read position: chr14:90,401,299
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 466427 as yet unmatched pairs. 15005 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:95,132,537
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 462128 as yet unmatched pairs. 10692 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:99,878,547
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 460063 as yet unmatched pairs. 8581 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:102,018,604
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 458298 as yet unmatched pairs. 6796 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:102,939,830
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 456105 as yet unmatched pairs. 4579 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:104,774,952
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 454155 as yet unmatched pairs. 2602 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:22,925,978
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 451232 as yet unmatched pairs. 37783 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:30,904,957
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 449523 as yet unmatched pairs. 36057 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:40,161,241
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 447569 as yet unmatched pairs. 34090 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:41,537,020
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 445606 as yet unmatched pairs. 32116 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:42,652,555
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 443665 as yet unmatched pairs. 30168 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:43,527,694
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 442571 as yet unmatched pairs. 29063 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr15:45,023,226
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 439710 as yet unmatched pairs. 26186 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:51,450,263
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 437478 as yet unmatched pairs. 23930 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:57,231,246
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 445803 as yet unmatched pairs. 32240 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:60,349,075
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 433870 as yet unmatched pairs. 20294 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:64,819,916
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 431864 as yet unmatched pairs. 18276 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:68,193,974
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 429451 as yet unmatched pairs. 15849 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:72,209,700
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 428237 as yet unmatched pairs. 14610 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr15:74,801,018
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 425414 as yet unmatched pairs. 11781 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:76,795,315
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 423356 as yet unmatched pairs. 9715 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:80,121,752
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 421534 as yet unmatched pairs. 7868 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:85,693,405
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 419515 as yet unmatched pairs. 5825 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:90,388,308
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 417559 as yet unmatched pairs. 3863 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:96,334,260
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 416659 as yet unmatched pairs. 2943 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr16:381,701
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 412882 as yet unmatched pairs. 71636 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:794,192
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 411244 as yet unmatched pairs. 69980 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:1,697,818
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 408194 as yet unmatched pairs. 66918 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:2,090,074
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 404809 as yet unmatched pairs. 63523 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,514,101
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 403399 as yet unmatched pairs. 62109 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,770,624
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 401716 as yet unmatched pairs. 60412 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr16:3,770,832
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 397931 as yet unmatched pairs. 56618 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr16:8,858,387
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 397478 as yet unmatched pairs. 56157 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr16:14,247,252
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 393929 as yet unmatched pairs. 52595 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:15,104,684
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 392371 as yet unmatched pairs. 51030 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:16,328,702
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 391254 as yet unmatched pairs. 49909 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:18,372,578
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 391011 as yet unmatched pairs. 49665 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:19,545,848
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 389383 as yet unmatched pairs. 48032 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,284
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 388102 as yet unmatched pairs. 46739 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,010
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 387413 as yet unmatched pairs. 46043 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:24,571,639
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 385420 as yet unmatched pairs. 44040 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:28,379,743
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 383293 as yet unmatched pairs. 41878 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:28,836,807
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 381741 as yet unmatched pairs. 40312 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:29,695,136
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 380641 as yet unmatched pairs. 39206 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,220
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 379128 as yet unmatched pairs. 37681 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:30,655,500
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 376196 as yet unmatched pairs. 34743 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 2s. Last read position: chr16:31,076,951
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 374014 as yet unmatched pairs. 32556 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 3s. Last read position: chr16:31,186,801
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 388567 as yet unmatched pairs. 47089 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:31,459,746
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 370008 as yet unmatched pairs. 28520 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:51,646,724
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 368017 as yet unmatched pairs. 26516 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:56,453,262
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 366535 as yet unmatched pairs. 25017 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:58,545,425
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 364185 as yet unmatched pairs. 22657 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:67,200,170
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 361759 as yet unmatched pairs. 20217 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:68,259,331
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 359494 as yet unmatched pairs. 17934 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:70,217,189
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 357513 as yet unmatched pairs. 15938 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:71,895,579
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 355653 as yet unmatched pairs. 14071 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:74,485,890
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 353856 as yet unmatched pairs. 12255 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr16:79,154,865
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 351177 as yet unmatched pairs. 9554 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr16:87,383,467
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 349126 as yet unmatched pairs. 7488 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr16:88,804,588
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 346799 as yet unmatched pairs. 5145 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,736
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 346256 as yet unmatched pairs. 4588 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:90,031,439
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 341845 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,873
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 345461 as yet unmatched pairs. 78828 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:1,787,579
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 337712 as yet unmatched pairs. 71074 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:4,044,275
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 335390 as yet unmatched pairs. 68742 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:4,946,806
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 334003 as yet unmatched pairs. 67340 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:7,220,124
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 331304 as yet unmatched pairs. 64634 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:7,462,770
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 328778 as yet unmatched pairs. 62100 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:7,577,133
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 328414 as yet unmatched pairs. 61728 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:7,910,909
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 325121 as yet unmatched pairs. 58424 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr17:9,779,670
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 322338 as yet unmatched pairs. 55631 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:17,078,010
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 320805 as yet unmatched pairs. 54081 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr17:18,247,330
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 318252 as yet unmatched pairs. 51512 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:26,774,512
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 316054 as yet unmatched pairs. 49310 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:28,700,412
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 314230 as yet unmatched pairs. 47473 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:29,612,137
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 312095 as yet unmatched pairs. 45322 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:32,933,290
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 310667 as yet unmatched pairs. 43880 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:38,196,372
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 308138 as yet unmatched pairs. 41338 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 125s. Last read position: chr17:40,392,222
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 306247 as yet unmatched pairs. 39440 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:42,673,497
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 303786 as yet unmatched pairs. 36971 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:44,902,460
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 301570 as yet unmatched pairs. 34748 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr17:47,973,543
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 300335 as yet unmatched pairs. 33511 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:49,378,658
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 297731 as yet unmatched pairs. 30890 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 2s. Last read position: chr17:51,041,641
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 295702 as yet unmatched pairs. 28853 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 2s. Last read position: chr17:58,980,913
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 293370 as yet unmatched pairs. 26510 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:59,680,921
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 298977 as yet unmatched pairs. 32113 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:61,801,285
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 289295 as yet unmatched pairs. 22418 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:63,834,524
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 287552 as yet unmatched pairs. 20663 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:67,945,592
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 285353 as yet unmatched pairs. 18454 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:75,128,791
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 283208 as yet unmatched pairs. 16298 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:75,910,770
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 280919 as yet unmatched pairs. 13989 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:78,175,083
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 279315 as yet unmatched pairs. 12379 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr17:80,389,311
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 276252 as yet unmatched pairs. 9304 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:81,597,245
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 274283 as yet unmatched pairs. 7321 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:82,009,164
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 271915 as yet unmatched pairs. 4943 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:82,093,289
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 269948 as yet unmatched pairs. 2968 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr18:742,979
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 266506 as yet unmatched pairs. 16598 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr18:9,611,312
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 264459 as yet unmatched pairs. 14540 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr18:13,113,625
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 262324 as yet unmatched pairs. 12402 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr18:32,412,495
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 260281 as yet unmatched pairs. 10347 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 2s. Last read position: chr18:46,509,713
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 258660 as yet unmatched pairs. 8709 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 2s. Last read position: chr18:52,340,726
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 258565 as yet unmatched pairs. 8599 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr18:58,919,130
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 255017 as yet unmatched pairs. 5023 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr18:63,355,283
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 253726 as yet unmatched pairs. 3726 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr18:80,160,516
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 250092 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 2s. Last read position: chr19:811,265
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 247548 as yet unmatched pairs. 107024 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 2s. Last read position: chr19:1,254,242
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 246206 as yet unmatched pairs. 105673 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:1,611,711
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 242739 as yet unmatched pairs. 102204 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:2,137,745
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 240225 as yet unmatched pairs. 99682 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:2,807,626
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 237450 as yet unmatched pairs. 96906 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:4,090,660
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 234857 as yet unmatched pairs. 94307 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:4,929,295
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 233674 as yet unmatched pairs. 93121 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:5,591,750
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 230071 as yet unmatched pairs. 89509 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:6,415,123
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 228011 as yet unmatched pairs. 87443 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:7,869,306
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 224869 as yet unmatched pairs. 84298 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:9,653,284
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 222626 as yet unmatched pairs. 82053 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:10,328,660
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 220905 as yet unmatched pairs. 80328 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:10,904,967
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 217974 as yet unmatched pairs. 77395 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr19:11,436,155
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 215949 as yet unmatched pairs. 75363 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr19:12,800,995
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 214440 as yet unmatched pairs. 73845 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:13,772,131
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 211208 as yet unmatched pairs. 70606 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,533
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 210105 as yet unmatched pairs. 69494 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,534
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 208175 as yet unmatched pairs. 67561 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:15,544,226
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 204726 as yet unmatched pairs. 64104 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:17,315,974
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 201931 as yet unmatched pairs. 61307 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:18,419,638
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 200111 as yet unmatched pairs. 59482 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:18,865,308
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 196837 as yet unmatched pairs. 56202 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:19,679,596
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 194343 as yet unmatched pairs. 53702 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:34,172,702
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 192221 as yet unmatched pairs. 51562 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:35,721,033
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 189838 as yet unmatched pairs. 49175 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:37,414,120
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 187251 as yet unmatched pairs. 46584 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:39,314,964
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 184994 as yet unmatched pairs. 44326 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr19:39,885,696
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 183126 as yet unmatched pairs. 42453 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 2s. Last read position: chr19:40,580,871
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 180823 as yet unmatched pairs. 40146 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:41,506,155
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 177906 as yet unmatched pairs. 37225 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:42,286,856
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 177718 as yet unmatched pairs. 37030 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:43,551,658
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 173659 as yet unmatched pairs. 32959 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 2s. Last read position: chr19:45,363,990
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 171406 as yet unmatched pairs. 30702 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:46,605,847
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 169643 as yet unmatched pairs. 28935 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:47,372,730
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 166318 as yet unmatched pairs. 25607 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:48,616,128
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 165482 as yet unmatched pairs. 24766 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:49,343,287
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 161925 as yet unmatched pairs. 21204 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:49,597,434
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 159543 as yet unmatched pairs. 18819 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:49,851,268
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 158689 as yet unmatched pairs. 17962 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:50,403,057
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 154699 as yet unmatched pairs. 13969 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:53,381,074
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 151770 as yet unmatched pairs. 11032 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:55,231,821
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 149960 as yet unmatched pairs. 9218 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:55,673,932
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 146926 as yet unmatched pairs. 6183 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:57,280,781
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 144756 as yet unmatched pairs. 4005 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:58,471,772
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 142503 as yet unmatched pairs. 1751 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr20:495,787
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 141050 as yet unmatched pairs. 32959 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr20:3,148,652
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 137774 as yet unmatched pairs. 29669 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr20:5,750,383
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 135298 as yet unmatched pairs. 27192 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr20:18,525,916
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 133391 as yet unmatched pairs. 25280 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr20:25,453,378
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 131184 as yet unmatched pairs. 23068 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr20:33,662,313
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 129180 as yet unmatched pairs. 21057 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr20:35,284,250
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 127037 as yet unmatched pairs. 18909 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:36,793,968
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 124399 as yet unmatched pairs. 16268 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr20:41,173,748
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 122400 as yet unmatched pairs. 14266 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr20:44,943,011
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 119962 as yet unmatched pairs. 11824 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:48,649,536
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 118017 as yet unmatched pairs. 9876 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:50,830,341
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 115608 as yet unmatched pairs. 7461 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:58,895,654
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 115391 as yet unmatched pairs. 7241 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:62,804,960
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 111032 as yet unmatched pairs. 2880 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:63,960,107
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 108904 as yet unmatched pairs. 751 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr21:8,209,671
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 107037 as yet unmatched pairs. 19914 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,880
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 105900 as yet unmatched pairs. 18764 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:8,257,904
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 103934 as yet unmatched pairs. 16796 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 0s. Last read position: chr21:8,396,598
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 103706 as yet unmatched pairs. 16567 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:8,435,037
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 102828 as yet unmatched pairs. 15686 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 0s. Last read position: chr21:8,443,256
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 102738 as yet unmatched pairs. 15595 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr21:14,166,384
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 101671 as yet unmatched pairs. 14526 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr21:28,935,221
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 98301 as yet unmatched pairs. 11155 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr21:33,517,058
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 96103 as yet unmatched pairs. 8946 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr21:37,067,257
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 94015 as yet unmatched pairs. 6855 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr21:43,056,824
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 91910 as yet unmatched pairs. 4749 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr21:44,777,321
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 90592 as yet unmatched pairs. 3428 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr21:46,438,256
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 87858 as yet unmatched pairs. 692 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr22:19,508,610
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 86078 as yet unmatched pairs. 33589 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:20,999,872
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 83174 as yet unmatched pairs. 30679 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr22:23,613,308
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 80679 as yet unmatched pairs. 28177 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:26,561,203
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 78467 as yet unmatched pairs. 25964 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:29,287,074
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 80725 as yet unmatched pairs. 28218 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:30,340,362
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 74623 as yet unmatched pairs. 22114 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:31,944,792
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 72691 as yet unmatched pairs. 20182 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:36,511,522
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 69973 as yet unmatched pairs. 17461 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr22:38,374,174
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 67381 as yet unmatched pairs. 14864 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr22:39,522,055
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 66989 as yet unmatched pairs. 14472 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:41,249,362
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 63410 as yet unmatched pairs. 10891 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr22:41,923,429
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 61089 as yet unmatched pairs. 8568 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:44,702,501
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 58638 as yet unmatched pairs. 6115 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr22:49,919,235
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 56304 as yet unmatched pairs. 3778 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr22:50,468,389
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 54159 as yet unmatched pairs. 1632 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:2,691,409
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 56308 as yet unmatched pairs. 42831 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:16,683,108
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 49116 as yet unmatched pairs. 35636 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chrX:24,812,836
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 47099 as yet unmatched pairs. 33599 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:41,152,965
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 45186 as yet unmatched pairs. 31685 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chrX:47,202,446
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 43601 as yet unmatched pairs. 30098 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:48,604,898
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 40765 as yet unmatched pairs. 27262 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:51,827,967
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 38736 as yet unmatched pairs. 25231 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:53,194,942
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 37383 as yet unmatched pairs. 23878 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrX:53,617,404
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 35362 as yet unmatched pairs. 21856 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:68,511,848
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 32995 as yet unmatched pairs. 19488 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:71,392,620
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 30766 as yet unmatched pairs. 17257 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:77,682,486
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 29194 as yet unmatched pairs. 15685 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:86,160,221
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 26913 as yet unmatched pairs. 13402 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:109,659,452
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 25268 as yet unmatched pairs. 11757 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:124,200,113
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 23120 as yet unmatched pairs. 9609 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:135,032,641
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 21390 as yet unmatched pairs. 7879 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:150,852,794
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 19256 as yet unmatched pairs. 5745 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chrX:154,092,188
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 17026 as yet unmatched pairs. 3515 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:154,448,904
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 14963 as yet unmatched pairs. 1452 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrM:6,960
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 14501 as yet unmatched pairs. 2492 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: GL000220.1:109,937
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 11791 as yet unmatched pairs. 3161 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,393
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 8811 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 0s. Last read position: GL000220.1:157,046
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 8793 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,792
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 8632 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,882
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 8648 as yet unmatched pairs. 8587 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,614
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 4433 as yet unmatched pairs. 4372 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,755
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 2032 as yet unmatched pairs. 1971 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,585
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 71 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 635252060 records. 0 pairs never matched.
INFO 2026-06-08 08:54:27 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139456; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:54:27 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:54:32 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:54:32 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:55:17 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 08:55:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,157
INFO 2026-06-08 08:55:39 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:55:39 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:56:40 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:56:49 MarkDuplicates After generateDuplicateIndexes freeMemory: 23442717304; totalMemory: 39392903168; maxMemory: 63585648640
INFO 2026-06-08 08:56:49 MarkDuplicates Marking 244100365 records as duplicates.
INFO 2026-06-08 08:56:49 MarkDuplicates Found 17734041 optical duplicate clusters.
INFO 2026-06-08 08:56:49 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:57:09 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:20s. Time for last 10,000,000: 20s. Last read position: chr1:23,079,615
INFO 2026-06-08 08:57:27 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:38s. Time for last 10,000,000: 17s. Last read position: chr1:42,930,822
INFO 2026-06-08 08:57:45 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:56s. Time for last 10,000,000: 18s. Last read position: chr1:100,058,702
INFO 2026-06-08 08:58:04 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:14s. Time for last 10,000,000: 18s. Last read position: chr1:150,579,226
INFO 2026-06-08 08:58:22 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:32s. Time for last 10,000,000: 18s. Last read position: chr1:171,571,349
INFO 2026-06-08 08:58:40 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:50s. Time for last 10,000,000: 18s. Last read position: chr1:222,673,390
INFO 2026-06-08 08:58:58 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:08s. Time for last 10,000,000: 17s. Last read position: chr2:27,233,698
INFO 2026-06-08 08:59:14 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:25s. Time for last 10,000,000: 16s. Last read position: chr2:55,418,841
INFO 2026-06-08 08:59:31 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:42s. Time for last 10,000,000: 17s. Last read position: chr2:109,585,829
INFO 2026-06-08 08:59:48 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:58s. Time for last 10,000,000: 16s. Last read position: chr2:189,458,635
INFO 2026-06-08 09:00:05 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 17s. Last read position: chr2:216,633,873
INFO 2026-06-08 09:00:22 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:33s. Time for last 10,000,000: 17s. Last read position: chr3:15,738,580
INFO 2026-06-08 09:00:41 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:51s. Time for last 10,000,000: 18s. Last read position: chr3:121,698,546
INFO 2026-06-08 09:00:58 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:09s. Time for last 10,000,000: 17s. Last read position: chr3:190,604,186
INFO 2026-06-08 09:01:15 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:26s. Time for last 10,000,000: 16s. Last read position: chr4:70,825,351
INFO 2026-06-08 09:01:32 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 16s. Last read position: chr5:447,545
INFO 2026-06-08 09:01:49 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:00s. Time for last 10,000,000: 17s. Last read position: chr5:75,355,179
INFO 2026-06-08 09:02:06 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 16s. Last read position: chr5:141,495,162
INFO 2026-06-08 09:02:23 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:34s. Time for last 10,000,000: 16s. Last read position: chr6:3,154,401
INFO 2026-06-08 09:02:39 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:50s. Time for last 10,000,000: 16s. Last read position: chr6:31,732,247
INFO 2026-06-08 09:02:57 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:07s. Time for last 10,000,000: 17s. Last read position: chr6:83,211,901
INFO 2026-06-08 09:03:18 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:28s. Time for last 10,000,000: 20s. Last read position: chr7:193,389
INFO 2026-06-08 09:03:37 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:48s. Time for last 10,000,000: 19s. Last read position: chr7:73,077,512
INFO 2026-06-08 09:03:55 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:06s. Time for last 10,000,000: 17s. Last read position: chr7:107,960,466
INFO 2026-06-08 09:04:13 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:24s. Time for last 10,000,000: 17s. Last read position: chr8:13,102,824
INFO 2026-06-08 09:04:31 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:41s. Time for last 10,000,000: 17s. Last read position: chr8:69,761,762
INFO 2026-06-08 09:04:49 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 18s. Last read position: chr8:144,932,268
INFO 2026-06-08 09:05:08 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:19s. Time for last 10,000,000: 18s. Last read position: chr9:106,926,536
INFO 2026-06-08 09:05:27 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:37s. Time for last 10,000,000: 18s. Last read position: chr9:136,209,109
INFO 2026-06-08 09:05:45 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:55s. Time for last 10,000,000: 17s. Last read position: chr10:45,787,100
INFO 2026-06-08 09:06:04 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 18s. Last read position: chr10:103,089,683
INFO 2026-06-08 09:06:21 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:31s. Time for last 10,000,000: 17s. Last read position: chr11:32,976,351
INFO 2026-06-08 09:06:39 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:50s. Time for last 10,000,000: 18s. Last read position: chr11:62,520,131
INFO 2026-06-08 09:06:55 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:06s. Time for last 10,000,000: 16s. Last read position: chr11:69,648,118
INFO 2026-06-08 09:07:12 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:23s. Time for last 10,000,000: 16s. Last read position: chr11:123,060,171
INFO 2026-06-08 09:07:29 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:40s. Time for last 10,000,000: 16s. Last read position: chr12:45,730,085
INFO 2026-06-08 09:07:46 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 16s. Last read position: chr12:57,003,556
INFO 2026-06-08 09:08:03 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:13s. Time for last 10,000,000: 16s. Last read position: chr12:111,665,746
INFO 2026-06-08 09:08:19 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:30s. Time for last 10,000,000: 16s. Last read position: chr13:27,621,915
INFO 2026-06-08 09:08:36 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:47s. Time for last 10,000,000: 17s. Last read position: chr13:113,320,408
INFO 2026-06-08 09:08:53 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:04s. Time for last 10,000,000: 16s. Last read position: chr14:60,982,628
INFO 2026-06-08 09:09:10 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:21s. Time for last 10,000,000: 17s. Last read position: chr14:104,774,952
INFO 2026-06-08 09:09:28 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:38s. Time for last 10,000,000: 17s. Last read position: chr15:60,349,075
INFO 2026-06-08 09:09:45 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:55s. Time for last 10,000,000: 17s. Last read position: chr16:381,701
INFO 2026-06-08 09:10:01 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:12s. Time for last 10,000,000: 16s. Last read position: chr16:16,328,702
INFO 2026-06-08 09:10:19 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:30s. Time for last 10,000,000: 17s. Last read position: chr16:30,655,500
INFO 2026-06-08 09:10:39 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 19s. Last read position: chr16:71,895,579
INFO 2026-06-08 09:10:57 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:08s. Time for last 10,000,000: 18s. Last read position: chr17:4,946,806
INFO 2026-06-08 09:11:14 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:24s. Time for last 10,000,000: 16s. Last read position: chr17:29,612,137
INFO 2026-06-08 09:11:31 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 17s. Last read position: chr17:59,680,921
INFO 2026-06-08 09:11:48 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:59s. Time for last 10,000,000: 17s. Last read position: chr17:82,093,289
INFO 2026-06-08 09:12:05 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 16s. Last read position: chr19:811,265
INFO 2026-06-08 09:12:21 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:32s. Time for last 10,000,000: 16s. Last read position: chr19:9,653,284
INFO 2026-06-08 09:12:38 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:49s. Time for last 10,000,000: 16s. Last read position: chr19:18,419,638
INFO 2026-06-08 09:12:55 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:06s. Time for last 10,000,000: 16s. Last read position: chr19:42,286,856
INFO 2026-06-08 09:13:11 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:22s. Time for last 10,000,000: 16s. Last read position: chr19:53,381,074
INFO 2026-06-08 09:13:28 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:39s. Time for last 10,000,000: 16s. Last read position: chr20:33,662,313
INFO 2026-06-08 09:13:45 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:55s. Time for last 10,000,000: 16s. Last read position: chr21:8,209,671
INFO 2026-06-08 09:14:00 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:11s. Time for last 10,000,000: 15s. Last read position: chr21:43,056,824
INFO 2026-06-08 09:14:17 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:28s. Time for last 10,000,000: 17s. Last read position: chr22:36,511,522
INFO 2026-06-08 09:14:34 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:45s. Time for last 10,000,000: 16s. Last read position: chrX:24,812,836
INFO 2026-06-08 09:14:51 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:02s. Time for last 10,000,000: 17s. Last read position: chrX:86,160,221
INFO 2026-06-08 09:15:07 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:18s. Time for last 10,000,000: 15s. Last read position: GL000220.1:157,046
INFO 2026-06-08 09:15:23 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:15:23 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:15:23 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:15:23 MarkDuplicates Before output close freeMemory: 202245320; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:15:23 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:15:23 MarkDuplicates After output close freeMemory: 104172232; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:15:23 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.10 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory