File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/58227e1c14ac14aafed9910bff60a2/.command.log
Size
7.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (786-O_FFPE_RNA_0001_B23LG7FLT4_3)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-f79a17a0-988d-46c3-a0fc-cc7f26b06d9c/db/27263bb39e3cbdc9558e9c4c8a77db/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/58227e1c14ac14aafed9910bff60a2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/58227e1c14ac14aafed9910bff60a2/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/a47fe44a10e9750e8d1c4fc08c993b/786-O_FFPE_RNA_0001_B23LG7FLT4_3.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/dbdddd6e0e1379b75e9d8c8e2274fa/786-O_FFPE_RNA_0001_B23LG7FLT4_3.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/33 [00:00<?, ?it/s]LRP1B--AC078882.1
starfusion
arriba
CENPU--ENPP6
starfusion
arriba
LMNA--MEX3A
starfusion
DHX38--AMPD1
starfusion
arriba
BNC2--AL358117.1
starfusion
arriba
ZKSCAN7--KIF15
starfusion
arriba
AC008969.1--SMARCA4
starfusion
arriba
ARHGEF3--RRP9
starfusion
arriba
TLK2--AC240565.1
starfusion
GUSBP13--NAIP
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
HIF1A--SNAPC1
arriba
TMED7--TICAM2
arriba
TRIM33--TRIM33
arriba
MTAP--AL157937.1
arriba
ATAD2B--KLHL29
arriba
TVP23C--CDRT4
arriba
KIAA0100--KIAA0100
arriba
HMGB3P23--ACO1
arriba
RNA5SP281--ACO1
arriba
GTF2A1L--STON1-GTF2A1L
arriba
LHCGR--STON1-GTF2A1L
arriba
CCDC169--SOHLH2
arriba
TAS2R14--PRH2
arriba

Processing LRP1B--AC078882.1:   0%|          | 0/33 [00:00<?, ?it/s]
Processing LRP1B--AC078882.1:   3%|▎         | 1/33 [00:00<00:03,  9.20it/s]
Processing CENPU--ENPP6:   3%|▎         | 1/33 [00:00<00:03,  9.20it/s]     
Processing CENPU--ENPP6:   6%|▌         | 2/33 [00:00<00:03,  9.44it/s]
Processing LMNA--MEX3A:   6%|▌         | 2/33 [00:00<00:03,  9.44it/s] 
Processing LMNA--MEX3A:   9%|▉         | 3/33 [00:00<00:03,  9.53it/s]
Processing DHX38--AMPD1:   9%|▉         | 3/33 [00:00<00:03,  9.53it/s]
Processing DHX38--AMPD1:  12%|█▏        | 4/33 [00:00<00:03,  9.56it/s]
Processing BNC2--AL358117.1:  12%|█▏        | 4/33 [00:00<00:03,  9.56it/s]
Processing BNC2--AL358117.1:  15%|█▌        | 5/33 [00:00<00:02,  9.58it/s]
Processing ZKSCAN7--KIF15:  15%|█▌        | 5/33 [00:00<00:02,  9.58it/s]  
Processing ZKSCAN7--KIF15:  18%|█▊        | 6/33 [00:00<00:02,  9.59it/s]
Processing AC008969.1--SMARCA4:  18%|█▊        | 6/33 [00:00<00:02,  9.59it/s]
Processing AC008969.1--SMARCA4:  21%|██        | 7/33 [00:00<00:02,  9.60it/s]
Processing ARHGEF3--RRP9:  21%|██        | 7/33 [00:00<00:02,  9.60it/s]      
Processing ARHGEF3--RRP9:  24%|██▍       | 8/33 [00:00<00:02,  9.60it/s]
Processing TLK2--AC240565.1:  24%|██▍       | 8/33 [00:00<00:02,  9.60it/s]
Processing TLK2--AC240565.1:  27%|██▋       | 9/33 [00:00<00:02,  9.61it/s]
Processing GUSBP13--NAIP:  27%|██▋       | 9/33 [00:00<00:02,  9.61it/s]   
Processing GUSBP13--NAIP:  30%|███       | 10/33 [00:01<00:02,  9.61it/s]
Processing PCDHGB2--PCDHGA8:  30%|███       | 10/33 [00:01<00:02,  9.61it/s]
Processing PCDHGB2--PCDHGA8:  33%|███▎      | 11/33 [00:01<00:02,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  33%|███▎      | 11/33 [00:01<00:02,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  36%|███▋      | 12/33 [00:01<00:02,  9.61it/s]
Processing PCDHGB2--PCDHGB6:  36%|███▋      | 12/33 [00:01<00:02,  9.61it/s] 
Processing PCDHGB2--PCDHGB6:  39%|███▉      | 13/33 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC5:  39%|███▉      | 13/33 [00:01<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC5:  42%|████▏     | 14/33 [00:01<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  42%|████▏     | 14/33 [00:01<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  45%|████▌     | 15/33 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  45%|████▌     | 15/33 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  48%|████▊     | 16/33 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  48%|████▊     | 16/33 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  52%|█████▏    | 17/33 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  52%|█████▏    | 17/33 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  55%|█████▍    | 18/33 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  55%|█████▍    | 18/33 [00:01<00:01,  9.63it/s] 
Processing PCDHGB2--PCDHGA9:  58%|█████▊    | 19/33 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC3:  58%|█████▊    | 19/33 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC3:  61%|██████    | 20/33 [00:02<00:01,  9.63it/s]
Processing HIF1A--SNAPC1:  61%|██████    | 20/33 [00:02<00:01,  9.63it/s]   
Processing HIF1A--SNAPC1:  64%|██████▎   | 21/33 [00:02<00:01,  9.63it/s]
Processing TMED7--TICAM2:  64%|██████▎   | 21/33 [00:02<00:01,  9.63it/s]
Processing TMED7--TICAM2:  67%|██████▋   | 22/33 [00:02<00:01,  9.63it/s]
Processing TRIM33--TRIM33:  67%|██████▋   | 22/33 [00:02<00:01,  9.63it/s]
Processing TRIM33--TRIM33:  70%|██████▉   | 23/33 [00:02<00:01,  9.63it/s]
Processing MTAP--AL157937.1:  70%|██████▉   | 23/33 [00:02<00:01,  9.63it/s]
Processing MTAP--AL157937.1:  73%|███████▎  | 24/33 [00:02<00:00,  9.63it/s]
Processing ATAD2B--KLHL29:  73%|███████▎  | 24/33 [00:02<00:00,  9.63it/s]  
Processing ATAD2B--KLHL29:  76%|███████▌  | 25/33 [00:02<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  76%|███████▌  | 25/33 [00:02<00:00,  9.63it/s] 
Processing TVP23C--CDRT4:  79%|███████▉  | 26/33 [00:02<00:00,  9.63it/s]
Processing KIAA0100--KIAA0100:  79%|███████▉  | 26/33 [00:02<00:00,  9.63it/s]
Processing KIAA0100--KIAA0100:  82%|████████▏ | 27/33 [00:02<00:00,  9.63it/s]
Processing HMGB3P23--ACO1:  82%|████████▏ | 27/33 [00:02<00:00,  9.63it/s]    
Processing HMGB3P23--ACO1:  85%|████████▍ | 28/33 [00:02<00:00,  9.63it/s]
Processing RNA5SP281--ACO1:  85%|████████▍ | 28/33 [00:02<00:00,  9.63it/s]
Processing RNA5SP281--ACO1:  88%|████████▊ | 29/33 [00:03<00:00,  9.63it/s]
Processing GTF2A1L--STON1-GTF2A1L:  88%|████████▊ | 29/33 [00:03<00:00,  9.63it/s]
Processing GTF2A1L--STON1-GTF2A1L:  91%|█████████ | 30/33 [00:03<00:00,  9.63it/s]
Processing LHCGR--STON1-GTF2A1L:  91%|█████████ | 30/33 [00:03<00:00,  9.63it/s]  
Processing LHCGR--STON1-GTF2A1L:  94%|█████████▍| 31/33 [00:03<00:00,  9.63it/s]
Processing CCDC169--SOHLH2:  94%|█████████▍| 31/33 [00:03<00:00,  9.63it/s]     
Processing CCDC169--SOHLH2:  97%|█████████▋| 32/33 [00:03<00:00,  9.63it/s]
Processing TAS2R14--PRH2:  97%|█████████▋| 32/33 [00:03<00:00,  9.63it/s]  
Processing TAS2R14--PRH2: 100%|██████████| 33/33 [00:03<00:00,  9.63it/s]
Processing TAS2R14--PRH2: 100%|██████████| 33/33 [00:03<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory