Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/74352ee18400110eaeb5bd105517d5/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/ac164ca419e88ac7a4d028d9da2104/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/ac164ca419e88ac7a4d028d9da2104/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory