Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/3bdbad2b8799faaf5a1d638d4d409d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/8ee7f1f0353d4ecd0450a457cf1e71/fi_workdir/MCF7_FFPE_RNA_0001_B23LG7FLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/3bdbad2b8799faaf5a1d638d4d409d/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 40340
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 40340
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:40340
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 7 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ABCA1--ELAPOR1 HAVANA gene 58357 82692 . + . FI_gene_label "ELAPOR1^ENSG00000116299.17" ; ID "ABCA1--ELAPOR1^ELAPOR1^ENSG00000116299.17" ; ccdsid "CCDS794.1" ; exon_id "ENSE00002163328.2" ; exon_number 1 ; gene_id "ABCA1--ELAPOR1^ELAPOR1^ENSG00000116299.17" ; gene_name ELAPOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011725.6" ; havana_transcript "OTTHUMT00000032389.3" ; hgnc_id "HGNC:29618" ; level 2 ; orig_coord_info "chr1,109114184,109114336,+" ; protein_id "ENSP00000358955.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ABCA1--ELAPOR1^ENST00000369939.8" ; transcript_name "ELAPOR1-203" ; transcript_support_level 5 ; transcript_type protein_coding
ABCA1--ELAPOR1 HAVANA mRNA 58357 82692 . + . FI_gene_label "ELAPOR1^ENSG00000116299.17" ; ID "ABCA1--ELAPOR1^ENST00000369939.8" ; Parent "ABCA1--ELAPOR1^ELAPOR1^ENSG00000116299.17" ; ccdsid "CCDS794.1" ; exon_id "ENSE00002163328.2" ; exon_number 1 ; gene_id "ABCA1--ELAPOR1^ELAPOR1^ENSG00000116299.17" ; gene_name ELAPOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011725.6" ; havana_transcript "OTTHUMT00000032389.3" ; hgnc_id "HGNC:29618" ; level 2 ; orig_coord_info "chr1,109114184,109114336,+" ; protein_id "ENSP00000358955.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ABCA1--ELAPOR1^ENST00000369939.8" ; transcript_name "ELAPOR1-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ABCA1--ELAPOR1 HAVANA gene 1017 7097 . + . FI_gene_label "ABCA1^ENSG00000165029.17" ; ID "ABCA1--ELAPOR1^ABCA1^ENSG00000165029.17" ; exon_id "ENSE00003635850.1" ; exon_number 3 ; gene_id "ABCA1--ELAPOR1^ABCA1^ENSG00000165029.17" ; gene_name ABCA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020417.2" ; havana_transcript "OTTHUMT00000053493.1" ; hgnc_id "HGNC:29" ; level 2 ; orig_coord_info "chr9,104884427,104884548,-" ; protein_id "ENSP00000363865.1" ; tag basic ; transcript_id "ABCA1--ELAPOR1^ENST00000374733.1" ; transcript_name "ABCA1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ABCA1--ELAPOR1 HAVANA mRNA 1017 7097 . + . FI_gene_label "ABCA1^ENSG00000165029.17" ; ID "ABCA1--ELAPOR1^ENST00000374733.1" ; Parent "ABCA1--ELAPOR1^ABCA1^ENSG00000165029.17" ; exon_id "ENSE00003635850.1" ; exon_number 3 ; gene_id "ABCA1--ELAPOR1^ABCA1^ENSG00000165029.17" ; gene_name ABCA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020417.2" ; havana_transcript "OTTHUMT00000053493.1" ; hgnc_id "HGNC:29" ; level 2 ; orig_coord_info "chr9,104884427,104884548,-" ; protein_id "ENSP00000363865.1" ; tag basic ; transcript_id "ABCA1--ELAPOR1^ENST00000374733.1" ; transcript_name "ABCA1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ABCA5--PPP4R1L HAVANA gene 1112 46790 . + . FI_gene_label "ABCA5^ENSG00000154265.16" ; ID "ABCA5--PPP4R1L^ABCA5^ENSG00000154265.16" ; ccdsid "CCDS11685.1" ; exon_id "ENSE00001260588.7" ; exon_number 2 ; gene_id "ABCA5--PPP4R1L^ABCA5^ENSG00000154265.16" ; gene_name ABCA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180303.4" ; havana_transcript "OTTHUMT00000450654.3" ; hgnc_id "HGNC:35" ; level 2 ; orig_coord_info "chr17,69314314,69314415,-" ; protein_id "ENSP00000376443.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ABCA5--PPP4R1L^ENST00000392676.8" ; transcript_name "ABCA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
ABCA5--PPP4R1L HAVANA mRNA 1112 46790 . + . FI_gene_label "ABCA5^ENSG00000154265.16" ; ID "ABCA5--PPP4R1L^ENST00000392676.8" ; Parent "ABCA5--PPP4R1L^ABCA5^ENSG00000154265.16" ; ccdsid "CCDS11685.1" ; exon_id "ENSE00001260588.7" ; exon_number 2 ; gene_id "ABCA5--PPP4R1L^ABCA5^ENSG00000154265.16" ; gene_name ABCA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180303.4" ; havana_transcript "OTTHUMT00000450654.3" ; hgnc_id "HGNC:35" ; level 2 ; orig_coord_info "chr17,69314314,69314415,-" ; protein_id "ENSP00000376443.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ABCA5--PPP4R1L^ENST00000392676.8" ; transcript_name "ABCA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ABL1--AL360020.1 HAVANA gene 3441 17569 . + . FI_gene_label "ABL1^ENSG00000097007.19" ; ID "ABL1--AL360020.1^ABL1^ENSG00000097007.19" ; ccdsid "CCDS35166.1" ; exon_id "ENSE00001955789.2" ; exon_number 1 ; gene_id "ABL1--AL360020.1^ABL1^ENSG00000097007.19" ; gene_name ABL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020813.5" ; havana_transcript "OTTHUMT00000054684.2" ; hgnc_id "HGNC:76" ; level 2 ; orig_coord_info "chr9,130835447,130835525,+" ; protein_id "ENSP00000323315.5" ; tag basic MANE_Select CCDS ; transcript_id "ABL1--AL360020.1^ENST00000318560.6" ; transcript_name "ABL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ABL1--AL360020.1 HAVANA mRNA 3441 17569 . + . FI_gene_label "ABL1^ENSG00000097007.19" ; ID "ABL1--AL360020.1^ENST00000318560.6" ; Parent "ABL1--AL360020.1^ABL1^ENSG00000097007.19" ; ccdsid "CCDS35166.1" ; exon_id "ENSE00001955789.2" ; exon_number 1 ; gene_id "ABL1--AL360020.1^ABL1^ENSG00000097007.19" ; gene_name ABL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020813.5" ; havana_transcript "OTTHUMT00000054684.2" ; hgnc_id "HGNC:76" ; level 2 ; orig_coord_info "chr9,130835447,130835525,+" ; protein_id "ENSP00000323315.5" ; tag basic MANE_Select CCDS ; transcript_id "ABL1--AL360020.1^ENST00000318560.6" ; transcript_name "ABL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC005037.1--NIF3L1 HAVANA gene 7035 15694 . + . FI_gene_label "NIF3L1^ENSG00000196290.16" ; ID "AC005037.1--NIF3L1^NIF3L1^ENSG00000196290.16" ; ccdsid "CCDS42797.1" ; exon_id "ENSE00001526718.1" ; exon_number 2 ; gene_id "AC005037.1--NIF3L1^NIF3L1^ENSG00000196290.16" ; gene_name NIF3L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154588.5" ; havana_transcript "OTTHUMT00000336198.1" ; hgnc_id "HGNC:13390" ; level 2 ; orig_coord_info "chr2,200892025,200892379,+" ; protein_id "ENSP00000352711.4" ; tag basic CCDS ; transcript_id "AC005037.1--NIF3L1^ENST00000359683.8" ; transcript_name "NIF3L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC005037.1--NIF3L1 HAVANA mRNA 7035 15694 . + . FI_gene_label "NIF3L1^ENSG00000196290.16" ; ID "AC005037.1--NIF3L1^ENST00000359683.8" ; Parent "AC005037.1--NIF3L1^NIF3L1^ENSG00000196290.16" ; ccdsid "CCDS42797.1" ; exon_id "ENSE00001526718.1" ; exon_number 2 ; gene_id "AC005037.1--NIF3L1^NIF3L1^ENSG00000196290.16" ; gene_name NIF3L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154588.5" ; havana_transcript "OTTHUMT00000336198.1" ; hgnc_id "HGNC:13390" ; level 2 ; orig_coord_info "chr2,200892025,200892379,+" ; protein_id "ENSP00000352711.4" ; tag basic CCDS ; transcript_id "AC005037.1--NIF3L1^ENST00000359683.8" ; transcript_name "NIF3L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC005993.1--RGS6 ENSEMBL gene 16301 50680 . + . FI_gene_label "RGS6^ENSG00000182732.18" ; ID "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; exon_id "ENSE00003732696.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; gene_name RGS6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171340.6" ; hgnc_id "HGNC:10002" ; level 3 ; orig_coord_info "chr14,72352116,72352194,+" ; protein_id "ENSP00000341199.7" ; tag basic ; transcript_id "AC005993.1--RGS6^ENST00000343854.10" ; transcript_name "RGS6-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC005993.1--RGS6 ENSEMBL mRNA 16301 50680 . + . FI_gene_label "RGS6^ENSG00000182732.18" ; ID "AC005993.1--RGS6^ENST00000343854.10" ; Parent "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; exon_id "ENSE00003732696.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; gene_name RGS6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171340.6" ; hgnc_id "HGNC:10002" ; level 3 ; orig_coord_info "chr14,72352116,72352194,+" ; protein_id "ENSP00000341199.7" ; tag basic ; transcript_id "AC005993.1--RGS6^ENST00000343854.10" ; transcript_name "RGS6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC010173.1--SLC16A7 HAVANA gene 10961 35931 . + . FI_gene_label "SLC16A7^ENSG00000118596.12" ; ID "AC010173.1--SLC16A7^SLC16A7^ENSG00000118596.12" ; ccdsid "CCDS8961.1" ; exon_id "ENSE00003664624.1" ; exon_number 2 ; gene_id "AC010173.1--SLC16A7^SLC16A7^ENSG00000118596.12" ; gene_name SLC16A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169923.6" ; havana_transcript "OTTHUMT00000406587.2" ; hgnc_id "HGNC:10928" ; level 2 ; orig_coord_info "chr12,59704802,59705018,+" ; protein_id "ENSP00000261187.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC010173.1--SLC16A7^ENST00000261187.8" ; transcript_name "SLC16A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC010173.1--SLC16A7 HAVANA mRNA 10961 35931 . + . FI_gene_label "SLC16A7^ENSG00000118596.12" ; ID "AC010173.1--SLC16A7^ENST00000261187.8" ; Parent "AC010173.1--SLC16A7^SLC16A7^ENSG00000118596.12" ; ccdsid "CCDS8961.1" ; exon_id "ENSE00003664624.1" ; exon_number 2 ; gene_id "AC010173.1--SLC16A7^SLC16A7^ENSG00000118596.12" ; gene_name SLC16A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169923.6" ; havana_transcript "OTTHUMT00000406587.2" ; hgnc_id "HGNC:10928" ; level 2 ; orig_coord_info "chr12,59704802,59705018,+" ; protein_id "ENSP00000261187.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC010173.1--SLC16A7^ENST00000261187.8" ; transcript_name "SLC16A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC011921.1--DSCAM HAVANA gene 8382 48350 . + . FI_gene_label "DSCAM^ENSG00000171587.15" ; ID "AC011921.1--DSCAM^DSCAM^ENSG00000171587.15" ; ccdsid "CCDS42929.1" ; exon_id "ENSE00001543050.2" ; exon_number 1 ; gene_id "AC011921.1--DSCAM^DSCAM^ENSG00000171587.15" ; gene_name DSCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000086732.2" ; havana_transcript "OTTHUMT00000195029.2" ; hgnc_id "HGNC:3039" ; level 2 ; orig_coord_info "chr21,40846619,40846661,-" ; protein_id "ENSP00000383303.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC011921.1--DSCAM^ENST00000400454.6" ; transcript_name "DSCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC011921.1--DSCAM HAVANA mRNA 8382 48350 . + . FI_gene_label "DSCAM^ENSG00000171587.15" ; ID "AC011921.1--DSCAM^ENST00000400454.6" ; Parent "AC011921.1--DSCAM^DSCAM^ENSG00000171587.15" ; ccdsid "CCDS42929.1" ; exon_id "ENSE00001543050.2" ; exon_number 1 ; gene_id "AC011921.1--DSCAM^DSCAM^ENSG00000171587.15" ; gene_name DSCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000086732.2" ; havana_transcript "OTTHUMT00000195029.2" ; hgnc_id "HGNC:3039" ; level 2 ; orig_coord_info "chr21,40846619,40846661,-" ; protein_id "ENSP00000383303.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC011921.1--DSCAM^ENST00000400454.6" ; transcript_name "DSCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC011921.1--PLPPR5 HAVANA gene 8553 20080 . + . FI_gene_label "PLPPR5^ENSG00000117598.13" ; ID "AC011921.1--PLPPR5^PLPPR5^ENSG00000117598.13" ; ccdsid "CCDS30778.1" ; exon_id "ENSE00001421078.3" ; exon_number 1 ; gene_id "AC011921.1--PLPPR5^PLPPR5^ENSG00000117598.13" ; gene_name PLPPR5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010738.5" ; havana_transcript "OTTHUMT00000393221.2" ; hgnc_id "HGNC:31703" ; level 2 ; orig_coord_info "chr1,99004435,99004671,-" ; protein_id "ENSP00000263177.4" ; tag basic MANE_Select CCDS ; transcript_id "AC011921.1--PLPPR5^ENST00000263177.5" ; transcript_name "PLPPR5-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC011921.1--PLPPR5 HAVANA mRNA 8553 20080 . + . FI_gene_label "PLPPR5^ENSG00000117598.13" ; ID "AC011921.1--PLPPR5^ENST00000263177.5" ; Parent "AC011921.1--PLPPR5^PLPPR5^ENSG00000117598.13" ; ccdsid "CCDS30778.1" ; exon_id "ENSE00001421078.3" ; exon_number 1 ; gene_id "AC011921.1--PLPPR5^PLPPR5^ENSG00000117598.13" ; gene_name PLPPR5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010738.5" ; havana_transcript "OTTHUMT00000393221.2" ; hgnc_id "HGNC:31703" ; level 2 ; orig_coord_info "chr1,99004435,99004671,-" ; protein_id "ENSP00000263177.4" ; tag basic MANE_Select CCDS ; transcript_id "AC011921.1--PLPPR5^ENST00000263177.5" ; transcript_name "PLPPR5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC020550.2--APBA1 HAVANA gene 5135 29201 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC020550.2--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC020550.2--APBA1 HAVANA mRNA 5135 29201 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC020550.2--APBA1^ENST00000265381.7" ; Parent "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC020550.2--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC099850.1--VMP1 HAVANA gene 6801 25503 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "AC099850.1--VMP1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "AC099850.1--VMP1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC099850.1--VMP1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC099850.1--VMP1 HAVANA mRNA 6801 25503 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "AC099850.1--VMP1^ENST00000262291.9" ; Parent "AC099850.1--VMP1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "AC099850.1--VMP1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC099850.1--VMP1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC104041.1--APBA1 HAVANA gene 27146 51212 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC104041.1--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC104041.1--APBA1 HAVANA mRNA 27146 51212 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC104041.1--APBA1^ENST00000265381.7" ; Parent "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC104041.1--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAMTS19--SLC27A6 HAVANA gene 34865 46727 . + . FI_gene_label "SLC27A6^ENSG00000113396.13" ; ID "ADAMTS19--SLC27A6^SLC27A6^ENSG00000113396.13" ; ccdsid "CCDS4145.1" ; exon_id "ENSE00000822446.5" ; exon_number 1 ; gene_id "ADAMTS19--SLC27A6^SLC27A6^ENSG00000113396.13" ; gene_name SLC27A6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128991.4" ; havana_transcript "OTTHUMT00000250980.2" ; hgnc_id "HGNC:11000" ; level 2 ; orig_coord_info "chr5,128966138,128966618,+" ; protein_id "ENSP00000262462.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAMTS19--SLC27A6^ENST00000262462.9" ; transcript_name "SLC27A6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAMTS19--SLC27A6 HAVANA mRNA 34865 46727 . + . FI_gene_label "SLC27A6^ENSG00000113396.13" ; ID "ADAMTS19--SLC27A6^ENST00000262462.9" ; Parent "ADAMTS19--SLC27A6^SLC27A6^ENSG00000113396.13" ; ccdsid "CCDS4145.1" ; exon_id "ENSE00000822446.5" ; exon_number 1 ; gene_id "ADAMTS19--SLC27A6^SLC27A6^ENSG00000113396.13" ; gene_name SLC27A6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128991.4" ; havana_transcript "OTTHUMT00000250980.2" ; hgnc_id "HGNC:11000" ; level 2 ; orig_coord_info "chr5,128966138,128966618,+" ; protein_id "ENSP00000262462.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAMTS19--SLC27A6^ENST00000262462.9" ; transcript_name "SLC27A6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAMTS19--SLC27A6 HAVANA gene 1018 28601 . + . FI_gene_label "ADAMTS19^ENSG00000145808.10" ; ID "ADAMTS19--SLC27A6^ADAMTS19^ENSG00000145808.10" ; ccdsid "CCDS4146.2" ; exon_id "ENSE00002085506.2" ; exon_number 1 ; gene_id "ADAMTS19--SLC27A6^ADAMTS19^ENSG00000145808.10" ; gene_name ADAMTS19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128990.4" ; havana_transcript "OTTHUMT00000250979.4" ; hgnc_id "HGNC:17111" ; level 2 ; orig_coord_info "chr5,129460392,129460482,+" ; protein_id "ENSP00000274487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAMTS19--SLC27A6^ENST00000274487.9" ; transcript_name "ADAMTS19-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAMTS19--SLC27A6 HAVANA mRNA 1018 28601 . + . FI_gene_label "ADAMTS19^ENSG00000145808.10" ; ID "ADAMTS19--SLC27A6^ENST00000274487.9" ; Parent "ADAMTS19--SLC27A6^ADAMTS19^ENSG00000145808.10" ; ccdsid "CCDS4146.2" ; exon_id "ENSE00002085506.2" ; exon_number 1 ; gene_id "ADAMTS19--SLC27A6^ADAMTS19^ENSG00000145808.10" ; gene_name ADAMTS19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128990.4" ; havana_transcript "OTTHUMT00000250979.4" ; hgnc_id "HGNC:17111" ; level 2 ; orig_coord_info "chr5,129460392,129460482,+" ; protein_id "ENSP00000274487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAMTS19--SLC27A6^ENST00000274487.9" ; transcript_name "ADAMTS19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AFF4--HSPA4 HAVANA gene 1001 30978 . + . FI_gene_label "AFF4^ENSG00000072364.13" ; ID "AFF4--HSPA4^AFF4^ENSG00000072364.13" ; ccdsid "CCDS4164.1" ; exon_id "ENSE00003583237.1" ; exon_number 2 ; gene_id "AFF4--HSPA4^AFF4^ENSG00000072364.13" ; gene_name AFF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059838.10" ; havana_transcript "OTTHUMT00000133049.2" ; hgnc_id "HGNC:17869" ; level 2 ; orig_coord_info "chr5,132937067,132937189,-" ; protein_id "ENSP00000265343.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AFF4--HSPA4^ENST00000265343.10" ; transcript_name "AFF4-201" ; transcript_support_level 1 ; transcript_type protein_coding
AFF4--HSPA4 HAVANA mRNA 1001 30978 . + . FI_gene_label "AFF4^ENSG00000072364.13" ; ID "AFF4--HSPA4^ENST00000265343.10" ; Parent "AFF4--HSPA4^AFF4^ENSG00000072364.13" ; ccdsid "CCDS4164.1" ; exon_id "ENSE00003583237.1" ; exon_number 2 ; gene_id "AFF4--HSPA4^AFF4^ENSG00000072364.13" ; gene_name AFF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059838.10" ; havana_transcript "OTTHUMT00000133049.2" ; hgnc_id "HGNC:17869" ; level 2 ; orig_coord_info "chr5,132937067,132937189,-" ; protein_id "ENSP00000265343.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AFF4--HSPA4^ENST00000265343.10" ; transcript_name "AFF4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AFF4--HSPA4 HAVANA gene 33979 55231 . + . FI_gene_label "HSPA4^ENSG00000170606.15" ; ID "AFF4--HSPA4^HSPA4^ENSG00000170606.15" ; ccdsid "CCDS4166.1" ; exon_id "ENSE00001897299.2" ; exon_number 1 ; gene_id "AFF4--HSPA4^HSPA4^ENSG00000170606.15" ; gene_name HSPA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129012.3" ; havana_transcript "OTTHUMT00000251011.2" ; hgnc_id "HGNC:5237" ; level 2 ; orig_coord_info "chr5,133052251,133052357,+" ; protein_id "ENSP00000302961.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AFF4--HSPA4^ENST00000304858.7" ; transcript_name "HSPA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
AFF4--HSPA4 HAVANA mRNA 33979 55231 . + . FI_gene_label "HSPA4^ENSG00000170606.15" ; ID "AFF4--HSPA4^ENST00000304858.7" ; Parent "AFF4--HSPA4^HSPA4^ENSG00000170606.15" ; ccdsid "CCDS4166.1" ; exon_id "ENSE00001897299.2" ; exon_number 1 ; gene_id "AFF4--HSPA4^HSPA4^ENSG00000170606.15" ; gene_name HSPA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129012.3" ; havana_transcript "OTTHUMT00000251011.2" ; hgnc_id "HGNC:5237" ; level 2 ; orig_coord_info "chr5,133052251,133052357,+" ; protein_id "ENSP00000302961.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AFF4--HSPA4^ENST00000304858.7" ; transcript_name "HSPA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGFG1--MIR5703 HAVANA gene 1005 24923 . + . FI_gene_label "AGFG1^ENSG00000173744.18" ; ID "AGFG1--MIR5703^AGFG1^ENSG00000173744.18" ; ccdsid "CCDS2467.1" ; exon_id "ENSE00001855491.2" ; exon_number 1 ; gene_id "AGFG1--MIR5703^AGFG1^ENSG00000173744.18" ; gene_name AGFG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133186.5" ; havana_transcript "OTTHUMT00000256895.2" ; hgnc_id "HGNC:5175" ; level 2 ; orig_coord_info "chr2,227472422,227472588,+" ; protein_id "ENSP00000312059.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AGFG1--MIR5703^ENST00000310078.13" ; transcript_name "AGFG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AGFG1--MIR5703 HAVANA mRNA 1005 24923 . + . FI_gene_label "AGFG1^ENSG00000173744.18" ; ID "AGFG1--MIR5703^ENST00000310078.13" ; Parent "AGFG1--MIR5703^AGFG1^ENSG00000173744.18" ; ccdsid "CCDS2467.1" ; exon_id "ENSE00001855491.2" ; exon_number 1 ; gene_id "AGFG1--MIR5703^AGFG1^ENSG00000173744.18" ; gene_name AGFG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133186.5" ; havana_transcript "OTTHUMT00000256895.2" ; hgnc_id "HGNC:5175" ; level 2 ; orig_coord_info "chr2,227472422,227472588,+" ; protein_id "ENSP00000312059.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AGFG1--MIR5703^ENST00000310078.13" ; transcript_name "AGFG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGFG1--SCYGR1 HAVANA gene 1005 24923 . + . FI_gene_label "AGFG1^ENSG00000173744.18" ; ID "AGFG1--SCYGR1^AGFG1^ENSG00000173744.18" ; ccdsid "CCDS2467.1" ; exon_id "ENSE00001855491.2" ; exon_number 1 ; gene_id "AGFG1--SCYGR1^AGFG1^ENSG00000173744.18" ; gene_name AGFG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133186.5" ; havana_transcript "OTTHUMT00000256895.2" ; hgnc_id "HGNC:5175" ; level 2 ; orig_coord_info "chr2,227472422,227472588,+" ; protein_id "ENSP00000312059.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AGFG1--SCYGR1^ENST00000310078.13" ; transcript_name "AGFG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AGFG1--SCYGR1 HAVANA mRNA 1005 24923 . + . FI_gene_label "AGFG1^ENSG00000173744.18" ; ID "AGFG1--SCYGR1^ENST00000310078.13" ; Parent "AGFG1--SCYGR1^AGFG1^ENSG00000173744.18" ; ccdsid "CCDS2467.1" ; exon_id "ENSE00001855491.2" ; exon_number 1 ; gene_id "AGFG1--SCYGR1^AGFG1^ENSG00000173744.18" ; gene_name AGFG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133186.5" ; havana_transcript "OTTHUMT00000256895.2" ; hgnc_id "HGNC:5175" ; level 2 ; orig_coord_info "chr2,227472422,227472588,+" ; protein_id "ENSP00000312059.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AGFG1--SCYGR1^ENST00000310078.13" ; transcript_name "AGFG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGFG1--SCYGR1 HAVANA gene 27924 28190 . + . FI_gene_label "SCYGR1^ENSG00000284629.1" ; ID "AGFG1--SCYGR1^SCYGR1^ENSG00000284629.1" ; exon_id "ENSE00003812659.1" ; exon_number 1 ; gene_id "AGFG1--SCYGR1^SCYGR1^ENSG00000284629.1" ; gene_name SCYGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192261.1" ; havana_transcript "OTTHUMT00000493041.1" ; hgnc_id "HGNC:34218" ; level 2 ; orig_coord_info "chr2,227387686,227387949,-" ; protein_id "ENSP00000493109.1" ; tag not_best_in_genome_evidence basic appris_principal_1 ; transcript_id "AGFG1--SCYGR1^ENST00000641359.1" ; transcript_name "SCYGR1-201" ; transcript_type protein_coding
AGFG1--SCYGR1 HAVANA mRNA 27924 28190 . + . FI_gene_label "SCYGR1^ENSG00000284629.1" ; ID "AGFG1--SCYGR1^ENST00000641359.1" ; Parent "AGFG1--SCYGR1^SCYGR1^ENSG00000284629.1" ; exon_id "ENSE00003812659.1" ; exon_number 1 ; gene_id "AGFG1--SCYGR1^SCYGR1^ENSG00000284629.1" ; gene_name SCYGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192261.1" ; havana_transcript "OTTHUMT00000493041.1" ; hgnc_id "HGNC:34218" ; level 2 ; orig_coord_info "chr2,227387686,227387949,-" ; protein_id "ENSP00000493109.1" ; tag not_best_in_genome_evidence basic appris_principal_1 ; transcript_id "AGFG1--SCYGR1^ENST00000641359.1" ; transcript_name "SCYGR1-201" ; transcript_type protein_coding
L1 and L2 created:
AHCYL1--RAD51C HAVANA gene 19900 35454 . + . FI_gene_label "RAD51C^ENSG00000108384.15" ; ID "AHCYL1--RAD51C^RAD51C^ENSG00000108384.15" ; ccdsid "CCDS11611.1" ; exon_id "ENSE00003843383.1" ; exon_number 1 ; gene_id "AHCYL1--RAD51C^RAD51C^ENSG00000108384.15" ; gene_name RAD51C ; gene_type protein_coding ; havana_gene "OTTHUMG00000141292.8" ; havana_transcript "OTTHUMT00000280540.4" ; hgnc_id "HGNC:9820" ; level 2 ; orig_coord_info "chr17,58692644,58692788,+" ; protein_id "ENSP00000336701.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AHCYL1--RAD51C^ENST00000337432.9" ; transcript_name "RAD51C-201" ; transcript_support_level 1 ; transcript_type protein_coding
AHCYL1--RAD51C HAVANA mRNA 19900 35454 . + . FI_gene_label "RAD51C^ENSG00000108384.15" ; ID "AHCYL1--RAD51C^ENST00000337432.9" ; Parent "AHCYL1--RAD51C^RAD51C^ENSG00000108384.15" ; ccdsid "CCDS11611.1" ; exon_id "ENSE00003843383.1" ; exon_number 1 ; gene_id "AHCYL1--RAD51C^RAD51C^ENSG00000108384.15" ; gene_name RAD51C ; gene_type protein_coding ; havana_gene "OTTHUMG00000141292.8" ; havana_transcript "OTTHUMT00000280540.4" ; hgnc_id "HGNC:9820" ; level 2 ; orig_coord_info "chr17,58692644,58692788,+" ; protein_id "ENSP00000336701.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AHCYL1--RAD51C^ENST00000337432.9" ; transcript_name "RAD51C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AHCYL1--RAD51C HAVANA gene 2780 15517 . + . FI_gene_label "AHCYL1^ENSG00000168710.18" ; ID "AHCYL1--RAD51C^AHCYL1^ENSG00000168710.18" ; ccdsid "CCDS55620.1" ; exon_id "ENSE00003657518.1" ; exon_number 2 ; gene_id "AHCYL1--RAD51C^AHCYL1^ENSG00000168710.18" ; gene_name AHCYL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011652.4" ; havana_transcript "OTTHUMT00000032244.2" ; hgnc_id "HGNC:344" ; level 2 ; orig_coord_info "chr1,110009055,110009145,+" ; protein_id "ENSP00000352092.3" ; tag basic appris_principal_1 CCDS ; transcript_id "AHCYL1--RAD51C^ENST00000359172.3" ; transcript_name "AHCYL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AHCYL1--RAD51C HAVANA mRNA 2780 15517 . + . FI_gene_label "AHCYL1^ENSG00000168710.18" ; ID "AHCYL1--RAD51C^ENST00000359172.3" ; Parent "AHCYL1--RAD51C^AHCYL1^ENSG00000168710.18" ; ccdsid "CCDS55620.1" ; exon_id "ENSE00003657518.1" ; exon_number 2 ; gene_id "AHCYL1--RAD51C^AHCYL1^ENSG00000168710.18" ; gene_name AHCYL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011652.4" ; havana_transcript "OTTHUMT00000032244.2" ; hgnc_id "HGNC:344" ; level 2 ; orig_coord_info "chr1,110009055,110009145,+" ; protein_id "ENSP00000352092.3" ; tag basic appris_principal_1 CCDS ; transcript_id "AHCYL1--RAD51C^ENST00000359172.3" ; transcript_name "AHCYL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL109930.1--PTPRT HAVANA gene 6962 52221 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "AL109930.1--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "AL109930.1--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "AL109930.1--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
AL109930.1--PTPRT HAVANA mRNA 6962 52221 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "AL109930.1--PTPRT^ENST00000356100.6" ; Parent "AL109930.1--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "AL109930.1--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "AL109930.1--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AL121578.1--SYTL5 HAVANA gene 6711 28118 . + . FI_gene_label "SYTL5^ENSG00000147041.12" ; ID "AL121578.1--SYTL5^SYTL5^ENSG00000147041.12" ; ccdsid "CCDS14244.1" ; exon_id "ENSE00001431334.1" ; exon_number 2 ; gene_id "AL121578.1--SYTL5^SYTL5^ENSG00000147041.12" ; gene_name SYTL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033176.2" ; havana_transcript "OTTHUMT00000080883.2" ; hgnc_id "HGNC:15589" ; level 2 ; orig_coord_info "chrX,38033890,38034008,+" ; protein_id "ENSP00000297875.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AL121578.1--SYTL5^ENST00000297875.7" ; transcript_name "SYTL5-201" ; transcript_support_level 5 ; transcript_type protein_coding
AL121578.1--SYTL5 HAVANA mRNA 6711 28118 . + . FI_gene_label "SYTL5^ENSG00000147041.12" ; ID "AL121578.1--SYTL5^ENST00000297875.7" ; Parent "AL121578.1--SYTL5^SYTL5^ENSG00000147041.12" ; ccdsid "CCDS14244.1" ; exon_id "ENSE00001431334.1" ; exon_number 2 ; gene_id "AL121578.1--SYTL5^SYTL5^ENSG00000147041.12" ; gene_name SYTL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033176.2" ; havana_transcript "OTTHUMT00000080883.2" ; hgnc_id "HGNC:15589" ; level 2 ; orig_coord_info "chrX,38033890,38034008,+" ; protein_id "ENSP00000297875.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AL121578.1--SYTL5^ENST00000297875.7" ; transcript_name "SYTL5-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AL355306.2--BCAS1 HAVANA gene 29271 43986 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "AL355306.2--BCAS1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "AL355306.2--BCAS1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AL355306.2--BCAS1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL355306.2--BCAS1 HAVANA mRNA 29271 43986 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "AL355306.2--BCAS1^ENST00000371435.6" ; Parent "AL355306.2--BCAS1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "AL355306.2--BCAS1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AL355306.2--BCAS1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL499605.1--BCAS1 HAVANA gene 4453 19168 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "AL499605.1--BCAS1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "AL499605.1--BCAS1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AL499605.1--BCAS1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL499605.1--BCAS1 HAVANA mRNA 4453 19168 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "AL499605.1--BCAS1^ENST00000371435.6" ; Parent "AL499605.1--BCAS1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "AL499605.1--BCAS1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AL499605.1--BCAS1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKS1A--UHRF1BP1 HAVANA gene 31798 52741 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "ANKS1A--UHRF1BP1^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "ANKS1A--UHRF1BP1^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ANKS1A--UHRF1BP1^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKS1A--UHRF1BP1 HAVANA mRNA 31798 52741 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "ANKS1A--UHRF1BP1^ENST00000192788.6" ; Parent "ANKS1A--UHRF1BP1^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "ANKS1A--UHRF1BP1^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ANKS1A--UHRF1BP1^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKS1A--UHRF1BP1 HAVANA gene 1001 28729 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "ANKS1A--UHRF1BP1^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "ANKS1A--UHRF1BP1^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "ANKS1A--UHRF1BP1^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKS1A--UHRF1BP1 HAVANA mRNA 1001 28729 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "ANKS1A--UHRF1BP1^ENST00000360359.5" ; Parent "ANKS1A--UHRF1BP1^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "ANKS1A--UHRF1BP1^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "ANKS1A--UHRF1BP1^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF2--SULF2 HAVANA gene 46888 70920 . + . FI_gene_label "SULF2^ENSG00000196562.14" ; ID "ARFGEF2--SULF2^SULF2^ENSG00000196562.14" ; ccdsid "CCDS13408.1" ; exon_id "ENSE00003553626.1" ; exon_number 2 ; gene_id "ARFGEF2--SULF2^SULF2^ENSG00000196562.14" ; gene_name SULF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032675.9" ; havana_transcript "OTTHUMT00000079606.1" ; hgnc_id "HGNC:20392" ; level 2 ; orig_coord_info "chr20,47757189,47757363,-" ; protein_id "ENSP00000353007.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ARFGEF2--SULF2^ENST00000359930.8" ; transcript_name "SULF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF2--SULF2 HAVANA mRNA 46888 70920 . + . FI_gene_label "SULF2^ENSG00000196562.14" ; ID "ARFGEF2--SULF2^ENST00000359930.8" ; Parent "ARFGEF2--SULF2^SULF2^ENSG00000196562.14" ; ccdsid "CCDS13408.1" ; exon_id "ENSE00003553626.1" ; exon_number 2 ; gene_id "ARFGEF2--SULF2^SULF2^ENSG00000196562.14" ; gene_name SULF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032675.9" ; havana_transcript "OTTHUMT00000079606.1" ; hgnc_id "HGNC:20392" ; level 2 ; orig_coord_info "chr20,47757189,47757363,-" ; protein_id "ENSP00000353007.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ARFGEF2--SULF2^ENST00000359930.8" ; transcript_name "SULF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF2--SULF2 HAVANA gene 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--SULF2^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--SULF2^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--SULF2^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF2--SULF2 HAVANA mRNA 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--SULF2^ENST00000371917.5" ; Parent "ARFGEF2--SULF2^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--SULF2^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--SULF2^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARHGAP10--EDNRA ENSEMBL gene 35561 46999 . + . FI_gene_label "EDNRA^ENSG00000151617.17" ; ID "ARHGAP10--EDNRA^EDNRA^ENSG00000151617.17" ; ccdsid "CCDS3769.1" ; exon_id "ENSE00001000667.4" ; exon_number 2 ; gene_id "ARHGAP10--EDNRA^EDNRA^ENSG00000151617.17" ; gene_name EDNRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000161354.4" ; hgnc_id "HGNC:3179" ; level 3 ; orig_coord_info "chr4,147485682,147486101,+" ; protein_id "ENSP00000315011.5" ; tag basic appris_principal_1 CCDS ; transcript_id "ARHGAP10--EDNRA^ENST00000324300.10" ; transcript_name "EDNRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARHGAP10--EDNRA ENSEMBL mRNA 35561 46999 . + . FI_gene_label "EDNRA^ENSG00000151617.17" ; ID "ARHGAP10--EDNRA^ENST00000324300.10" ; Parent "ARHGAP10--EDNRA^EDNRA^ENSG00000151617.17" ; ccdsid "CCDS3769.1" ; exon_id "ENSE00001000667.4" ; exon_number 2 ; gene_id "ARHGAP10--EDNRA^EDNRA^ENSG00000151617.17" ; gene_name EDNRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000161354.4" ; hgnc_id "HGNC:3179" ; level 3 ; orig_coord_info "chr4,147485682,147486101,+" ; protein_id "ENSP00000315011.5" ; tag basic appris_principal_1 CCDS ; transcript_id "ARHGAP10--EDNRA^ENST00000324300.10" ; transcript_name "EDNRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARHGAP10--EDNRA HAVANA gene 1026 32560 . + . FI_gene_label "ARHGAP10^ENSG00000071205.12" ; ID "ARHGAP10--EDNRA^ARHGAP10^ENSG00000071205.12" ; ccdsid "CCDS34075.1" ; exon_id "ENSE00003691582.2" ; exon_number 1 ; gene_id "ARHGAP10--EDNRA^ARHGAP10^ENSG00000071205.12" ; gene_name ARHGAP10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161460.2" ; havana_transcript "OTTHUMT00000365005.2" ; hgnc_id "HGNC:26099" ; level 2 ; orig_coord_info "chr4,147732302,147732455,+" ; protein_id "ENSP00000336923.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARHGAP10--EDNRA^ENST00000336498.8" ; transcript_name "ARHGAP10-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARHGAP10--EDNRA HAVANA mRNA 1026 32560 . + . FI_gene_label "ARHGAP10^ENSG00000071205.12" ; ID "ARHGAP10--EDNRA^ENST00000336498.8" ; Parent "ARHGAP10--EDNRA^ARHGAP10^ENSG00000071205.12" ; ccdsid "CCDS34075.1" ; exon_id "ENSE00003691582.2" ; exon_number 1 ; gene_id "ARHGAP10--EDNRA^ARHGAP10^ENSG00000071205.12" ; gene_name ARHGAP10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161460.2" ; havana_transcript "OTTHUMT00000365005.2" ; hgnc_id "HGNC:26099" ; level 2 ; orig_coord_info "chr4,147732302,147732455,+" ; protein_id "ENSP00000336923.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARHGAP10--EDNRA^ENST00000336498.8" ; transcript_name "ARHGAP10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARRB1--KLHL35 HAVANA gene 1001 22085 . + . FI_gene_label "ARRB1^ENSG00000137486.17" ; ID "ARRB1--KLHL35^ARRB1^ENSG00000137486.17" ; ccdsid "CCDS31640.1" ; exon_id "ENSE00002143937.1" ; exon_number 1 ; gene_id "ARRB1--KLHL35^ARRB1^ENSG00000137486.17" ; gene_name ARRB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165444.5" ; havana_transcript "OTTHUMT00000384093.1" ; hgnc_id "HGNC:711" ; level 2 ; orig_coord_info "chr11,75351588,75351607,-" ; protein_id "ENSP00000353124.3" ; tag basic CCDS ; transcript_id "ARRB1--KLHL35^ENST00000360025.7" ; transcript_name "ARRB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARRB1--KLHL35 HAVANA mRNA 1001 22085 . + . FI_gene_label "ARRB1^ENSG00000137486.17" ; ID "ARRB1--KLHL35^ENST00000360025.7" ; Parent "ARRB1--KLHL35^ARRB1^ENSG00000137486.17" ; ccdsid "CCDS31640.1" ; exon_id "ENSE00002143937.1" ; exon_number 1 ; gene_id "ARRB1--KLHL35^ARRB1^ENSG00000137486.17" ; gene_name ARRB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165444.5" ; havana_transcript "OTTHUMT00000384093.1" ; hgnc_id "HGNC:711" ; level 2 ; orig_coord_info "chr11,75351588,75351607,-" ; protein_id "ENSP00000353124.3" ; tag basic CCDS ; transcript_id "ARRB1--KLHL35^ENST00000360025.7" ; transcript_name "ARRB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARRB1--KLHL35 HAVANA gene 32163 39260 . + . FI_gene_label "KLHL35^ENSG00000149243.16" ; ID "ARRB1--KLHL35^KLHL35^ENSG00000149243.16" ; exon_id "ENSE00001470101.3" ; exon_number 1 ; gene_id "ARRB1--KLHL35^KLHL35^ENSG00000149243.16" ; gene_name KLHL35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133573.3" ; havana_transcript "OTTHUMT00000257675.3" ; hgnc_id "HGNC:26597" ; level 2 ; orig_coord_info "chr11,75429749,75429969,-" ; protein_id "ENSP00000365469.4" ; tag CAGE_supported_TSS basic ; transcript_id "ARRB1--KLHL35^ENST00000376292.8" ; transcript_name "KLHL35-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARRB1--KLHL35 HAVANA mRNA 32163 39260 . + . FI_gene_label "KLHL35^ENSG00000149243.16" ; ID "ARRB1--KLHL35^ENST00000376292.8" ; Parent "ARRB1--KLHL35^KLHL35^ENSG00000149243.16" ; exon_id "ENSE00001470101.3" ; exon_number 1 ; gene_id "ARRB1--KLHL35^KLHL35^ENSG00000149243.16" ; gene_name KLHL35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133573.3" ; havana_transcript "OTTHUMT00000257675.3" ; hgnc_id "HGNC:26597" ; level 2 ; orig_coord_info "chr11,75429749,75429969,-" ; protein_id "ENSP00000365469.4" ; tag CAGE_supported_TSS basic ; transcript_id "ARRB1--KLHL35^ENST00000376292.8" ; transcript_name "KLHL35-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASTN2--TBX4 HAVANA gene 39959 51493 . + . FI_gene_label "TBX4^ENSG00000121075.11" ; ID "ASTN2--TBX4^TBX4^ENSG00000121075.11" ; ccdsid "CCDS11629.1" ; exon_id "ENSE00000820434.1" ; exon_number 1 ; gene_id "ASTN2--TBX4^TBX4^ENSG00000121075.11" ; gene_name TBX4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180078.4" ; havana_transcript "OTTHUMT00000449649.1" ; hgnc_id "HGNC:11603" ; level 2 ; orig_coord_info "chr17,61456491,61456676,+" ; protein_id "ENSP00000240335.1" ; tag NAGNAG_splice_site basic appris_principal_4 CCDS ; transcript_id "ASTN2--TBX4^ENST00000240335.1" ; transcript_name "TBX4-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASTN2--TBX4 HAVANA mRNA 39959 51493 . + . FI_gene_label "TBX4^ENSG00000121075.11" ; ID "ASTN2--TBX4^ENST00000240335.1" ; Parent "ASTN2--TBX4^TBX4^ENSG00000121075.11" ; ccdsid "CCDS11629.1" ; exon_id "ENSE00000820434.1" ; exon_number 1 ; gene_id "ASTN2--TBX4^TBX4^ENSG00000121075.11" ; gene_name TBX4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180078.4" ; havana_transcript "OTTHUMT00000449649.1" ; hgnc_id "HGNC:11603" ; level 2 ; orig_coord_info "chr17,61456491,61456676,+" ; protein_id "ENSP00000240335.1" ; tag NAGNAG_splice_site basic appris_principal_4 CCDS ; transcript_id "ASTN2--TBX4^ENST00000240335.1" ; transcript_name "TBX4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASTN2--TBX4 HAVANA gene 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--TBX4^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--TBX4^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--TBX4^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASTN2--TBX4 HAVANA mRNA 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--TBX4^ENST00000288520.9" ; Parent "ASTN2--TBX4^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--TBX4^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--TBX4^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP1A1--ZFP64 HAVANA gene 29346 38513 . + . FI_gene_label "ZFP64^ENSG00000020256.20" ; ID "ATP1A1--ZFP64^ZFP64^ENSG00000020256.20" ; ccdsid "CCDS13440.1" ; exon_id "ENSE00001455426.1" ; exon_number 1 ; gene_id "ATP1A1--ZFP64^ZFP64^ENSG00000020256.20" ; gene_name ZFP64 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032756.3" ; havana_transcript "OTTHUMT00000079744.1" ; hgnc_id "HGNC:15940" ; level 2 ; orig_coord_info "chr20,52191591,52191636,-" ; protein_id "ENSP00000216923.4" ; tag basic MANE_Select CCDS ; transcript_id "ATP1A1--ZFP64^ENST00000216923.5" ; transcript_name "ZFP64-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP1A1--ZFP64 HAVANA mRNA 29346 38513 . + . FI_gene_label "ZFP64^ENSG00000020256.20" ; ID "ATP1A1--ZFP64^ENST00000216923.5" ; Parent "ATP1A1--ZFP64^ZFP64^ENSG00000020256.20" ; ccdsid "CCDS13440.1" ; exon_id "ENSE00001455426.1" ; exon_number 1 ; gene_id "ATP1A1--ZFP64^ZFP64^ENSG00000020256.20" ; gene_name ZFP64 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032756.3" ; havana_transcript "OTTHUMT00000079744.1" ; hgnc_id "HGNC:15940" ; level 2 ; orig_coord_info "chr20,52191591,52191636,-" ; protein_id "ENSP00000216923.4" ; tag basic MANE_Select CCDS ; transcript_id "ATP1A1--ZFP64^ENST00000216923.5" ; transcript_name "ZFP64-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP1A1--ZFP64 HAVANA gene 1577 22815 . + . FI_gene_label "ATP1A1^ENSG00000163399.16" ; ID "ATP1A1--ZFP64^ATP1A1^ENSG00000163399.16" ; ccdsid "CCDS887.1" ; exon_id "ENSE00002716005.2" ; exon_number 1 ; gene_id "ATP1A1--ZFP64^ATP1A1^ENSG00000163399.16" ; gene_name ATP1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012109.10" ; havana_transcript "OTTHUMT00000033481.6" ; hgnc_id "HGNC:799" ; level 2 ; orig_coord_info "chr1,116373512,116373523,+" ; protein_id "ENSP00000295598.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ATP1A1--ZFP64^ENST00000295598.10" ; transcript_name "ATP1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP1A1--ZFP64 HAVANA mRNA 1577 22815 . + . FI_gene_label "ATP1A1^ENSG00000163399.16" ; ID "ATP1A1--ZFP64^ENST00000295598.10" ; Parent "ATP1A1--ZFP64^ATP1A1^ENSG00000163399.16" ; ccdsid "CCDS887.1" ; exon_id "ENSE00002716005.2" ; exon_number 1 ; gene_id "ATP1A1--ZFP64^ATP1A1^ENSG00000163399.16" ; gene_name ATP1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012109.10" ; havana_transcript "OTTHUMT00000033481.6" ; hgnc_id "HGNC:799" ; level 2 ; orig_coord_info "chr1,116373512,116373523,+" ; protein_id "ENSP00000295598.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ATP1A1--ZFP64^ENST00000295598.10" ; transcript_name "ATP1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP9A--AL357558.2 HAVANA gene 1063 36153 . + . FI_gene_label "ATP9A^ENSG00000054793.14" ; ID "ATP9A--AL357558.2^ATP9A^ENSG00000054793.14" ; exon_id "ENSE00001455504.1" ; exon_number 1 ; gene_id "ATP9A--AL357558.2^ATP9A^ENSG00000054793.14" ; gene_name ATP9A ; gene_type protein_coding ; havana_gene "OTTHUMG00000032751.4" ; havana_transcript "OTTHUMT00000079736.3" ; hgnc_id "HGNC:13540" ; level 2 ; orig_coord_info "chr20,51768302,51768324,-" ; protein_id "ENSP00000309086.5" ; tag basic ; transcript_id "ATP9A--AL357558.2^ENST00000311637.9" ; transcript_name "ATP9A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP9A--AL357558.2 HAVANA mRNA 1063 36153 . + . FI_gene_label "ATP9A^ENSG00000054793.14" ; ID "ATP9A--AL357558.2^ENST00000311637.9" ; Parent "ATP9A--AL357558.2^ATP9A^ENSG00000054793.14" ; exon_id "ENSE00001455504.1" ; exon_number 1 ; gene_id "ATP9A--AL357558.2^ATP9A^ENSG00000054793.14" ; gene_name ATP9A ; gene_type protein_coding ; havana_gene "OTTHUMG00000032751.4" ; havana_transcript "OTTHUMT00000079736.3" ; hgnc_id "HGNC:13540" ; level 2 ; orig_coord_info "chr20,51768302,51768324,-" ; protein_id "ENSP00000309086.5" ; tag basic ; transcript_id "ATP9A--AL357558.2^ENST00000311637.9" ; transcript_name "ATP9A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP9A--RNU7-92P HAVANA gene 1063 36153 . + . FI_gene_label "ATP9A^ENSG00000054793.14" ; ID "ATP9A--RNU7-92P^ATP9A^ENSG00000054793.14" ; exon_id "ENSE00001455504.1" ; exon_number 1 ; gene_id "ATP9A--RNU7-92P^ATP9A^ENSG00000054793.14" ; gene_name ATP9A ; gene_type protein_coding ; havana_gene "OTTHUMG00000032751.4" ; havana_transcript "OTTHUMT00000079736.3" ; hgnc_id "HGNC:13540" ; level 2 ; orig_coord_info "chr20,51768302,51768324,-" ; protein_id "ENSP00000309086.5" ; tag basic ; transcript_id "ATP9A--RNU7-92P^ENST00000311637.9" ; transcript_name "ATP9A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP9A--RNU7-92P HAVANA mRNA 1063 36153 . + . FI_gene_label "ATP9A^ENSG00000054793.14" ; ID "ATP9A--RNU7-92P^ENST00000311637.9" ; Parent "ATP9A--RNU7-92P^ATP9A^ENSG00000054793.14" ; exon_id "ENSE00001455504.1" ; exon_number 1 ; gene_id "ATP9A--RNU7-92P^ATP9A^ENSG00000054793.14" ; gene_name ATP9A ; gene_type protein_coding ; havana_gene "OTTHUMG00000032751.4" ; havana_transcript "OTTHUMT00000079736.3" ; hgnc_id "HGNC:13540" ; level 2 ; orig_coord_info "chr20,51768302,51768324,-" ; protein_id "ENSP00000309086.5" ; tag basic ; transcript_id "ATP9A--RNU7-92P^ENST00000311637.9" ; transcript_name "ATP9A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATXN7--AL355306.2 HAVANA gene 2406 36220 . + . FI_gene_label "ATXN7^ENSG00000163635.20" ; ID "ATXN7--AL355306.2^ATXN7^ENSG00000163635.20" ; ccdsid "CCDS43102.1" ; exon_id "ENSE00003898371.1" ; exon_number 3 ; gene_id "ATXN7--AL355306.2^ATXN7^ENSG00000163635.20" ; gene_name ATXN7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192515.2" ; havana_transcript "OTTHUMT00000352070.1" ; hgnc_id "HGNC:10560" ; level 2 ; orig_coord_info "chr3,63912599,63912923,+" ; protein_id "ENSP00000295900.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "ATXN7--AL355306.2^ENST00000295900.10" ; transcript_name "ATXN7-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATXN7--AL355306.2 HAVANA mRNA 2406 36220 . + . FI_gene_label "ATXN7^ENSG00000163635.20" ; ID "ATXN7--AL355306.2^ENST00000295900.10" ; Parent "ATXN7--AL355306.2^ATXN7^ENSG00000163635.20" ; ccdsid "CCDS43102.1" ; exon_id "ENSE00003898371.1" ; exon_number 3 ; gene_id "ATXN7--AL355306.2^ATXN7^ENSG00000163635.20" ; gene_name ATXN7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192515.2" ; havana_transcript "OTTHUMT00000352070.1" ; hgnc_id "HGNC:10560" ; level 2 ; orig_coord_info "chr3,63912599,63912923,+" ; protein_id "ENSP00000295900.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "ATXN7--AL355306.2^ENST00000295900.10" ; transcript_name "ATXN7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATXN7--AL499605.1 HAVANA gene 2406 36220 . + . FI_gene_label "ATXN7^ENSG00000163635.20" ; ID "ATXN7--AL499605.1^ATXN7^ENSG00000163635.20" ; ccdsid "CCDS43102.1" ; exon_id "ENSE00003898371.1" ; exon_number 3 ; gene_id "ATXN7--AL499605.1^ATXN7^ENSG00000163635.20" ; gene_name ATXN7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192515.2" ; havana_transcript "OTTHUMT00000352070.1" ; hgnc_id "HGNC:10560" ; level 2 ; orig_coord_info "chr3,63912599,63912923,+" ; protein_id "ENSP00000295900.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "ATXN7--AL499605.1^ENST00000295900.10" ; transcript_name "ATXN7-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATXN7--AL499605.1 HAVANA mRNA 2406 36220 . + . FI_gene_label "ATXN7^ENSG00000163635.20" ; ID "ATXN7--AL499605.1^ENST00000295900.10" ; Parent "ATXN7--AL499605.1^ATXN7^ENSG00000163635.20" ; ccdsid "CCDS43102.1" ; exon_id "ENSE00003898371.1" ; exon_number 3 ; gene_id "ATXN7--AL499605.1^ATXN7^ENSG00000163635.20" ; gene_name ATXN7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192515.2" ; havana_transcript "OTTHUMT00000352070.1" ; hgnc_id "HGNC:10560" ; level 2 ; orig_coord_info "chr3,63912599,63912923,+" ; protein_id "ENSP00000295900.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "ATXN7--AL499605.1^ENST00000295900.10" ; transcript_name "ATXN7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATXN7L3--FAM171A2 HAVANA gene 12310 19128 . + . FI_gene_label "FAM171A2^ENSG00000161682.15" ; ID "ATXN7L3--FAM171A2^FAM171A2^ENSG00000161682.15" ; ccdsid "CCDS45701.1" ; exon_id "ENSE00001899020.2" ; exon_number 1 ; gene_id "ATXN7L3--FAM171A2^FAM171A2^ENSG00000161682.15" ; gene_name FAM171A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132421.4" ; havana_transcript "OTTHUMT00000255559.3" ; hgnc_id "HGNC:30480" ; level 2 ; orig_coord_info "chr17,44363597,44363714,-" ; protein_id "ENSP00000293443.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATXN7L3--FAM171A2^ENST00000293443.12" ; transcript_name "FAM171A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATXN7L3--FAM171A2 HAVANA mRNA 12310 19128 . + . FI_gene_label "FAM171A2^ENSG00000161682.15" ; ID "ATXN7L3--FAM171A2^ENST00000293443.12" ; Parent "ATXN7L3--FAM171A2^FAM171A2^ENSG00000161682.15" ; ccdsid "CCDS45701.1" ; exon_id "ENSE00001899020.2" ; exon_number 1 ; gene_id "ATXN7L3--FAM171A2^FAM171A2^ENSG00000161682.15" ; gene_name FAM171A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132421.4" ; havana_transcript "OTTHUMT00000255559.3" ; hgnc_id "HGNC:30480" ; level 2 ; orig_coord_info "chr17,44363597,44363714,-" ; protein_id "ENSP00000293443.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATXN7L3--FAM171A2^ENST00000293443.12" ; transcript_name "FAM171A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATXN7L3--FAM171A2 HAVANA gene 2735 9309 . + . FI_gene_label "ATXN7L3^ENSG00000087152.15" ; ID "ATXN7L3--FAM171A2^ATXN7L3^ENSG00000087152.15" ; ccdsid "CCDS42345.1" ; exon_id "ENSE00002829236.1" ; exon_number 1 ; gene_id "ATXN7L3--FAM171A2^ATXN7L3^ENSG00000087152.15" ; gene_name ATXN7L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181812.2" ; havana_transcript "OTTHUMT00000457725.1" ; hgnc_id "HGNC:25416" ; level 2 ; orig_coord_info "chr17,44198020,44198070,-" ; protein_id "ENSP00000374035.3" ; tag basic appris_principal_4 CCDS ; transcript_id "ATXN7L3--FAM171A2^ENST00000389384.8" ; transcript_name "ATXN7L3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATXN7L3--FAM171A2 HAVANA mRNA 2735 9309 . + . FI_gene_label "ATXN7L3^ENSG00000087152.15" ; ID "ATXN7L3--FAM171A2^ENST00000389384.8" ; Parent "ATXN7L3--FAM171A2^ATXN7L3^ENSG00000087152.15" ; ccdsid "CCDS42345.1" ; exon_id "ENSE00002829236.1" ; exon_number 1 ; gene_id "ATXN7L3--FAM171A2^ATXN7L3^ENSG00000087152.15" ; gene_name ATXN7L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181812.2" ; havana_transcript "OTTHUMT00000457725.1" ; hgnc_id "HGNC:25416" ; level 2 ; orig_coord_info "chr17,44198020,44198070,-" ; protein_id "ENSP00000374035.3" ; tag basic appris_principal_4 CCDS ; transcript_id "ATXN7L3--FAM171A2^ENST00000389384.8" ; transcript_name "ATXN7L3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B3GNTL1--SLC9A8 HAVANA gene 1001 20192 . + . FI_gene_label "B3GNTL1^ENSG00000175711.8" ; ID "B3GNTL1--SLC9A8^B3GNTL1^ENSG00000175711.8" ; ccdsid "CCDS32778.1" ; exon_id "ENSE00001463771.1" ; exon_number 1 ; gene_id "B3GNTL1--SLC9A8^B3GNTL1^ENSG00000175711.8" ; gene_name B3GNTL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177788.1" ; havana_transcript "OTTHUMT00000438949.1" ; hgnc_id "HGNC:21727" ; level 2 ; orig_coord_info "chr17,83051737,83051796,-" ; protein_id "ENSP00000319979.3" ; tag basic appris_principal_1 CCDS ; transcript_id "B3GNTL1--SLC9A8^ENST00000320865.3" ; transcript_name "B3GNTL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
B3GNTL1--SLC9A8 HAVANA mRNA 1001 20192 . + . FI_gene_label "B3GNTL1^ENSG00000175711.8" ; ID "B3GNTL1--SLC9A8^ENST00000320865.3" ; Parent "B3GNTL1--SLC9A8^B3GNTL1^ENSG00000175711.8" ; ccdsid "CCDS32778.1" ; exon_id "ENSE00001463771.1" ; exon_number 1 ; gene_id "B3GNTL1--SLC9A8^B3GNTL1^ENSG00000175711.8" ; gene_name B3GNTL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177788.1" ; havana_transcript "OTTHUMT00000438949.1" ; hgnc_id "HGNC:21727" ; level 2 ; orig_coord_info "chr17,83051737,83051796,-" ; protein_id "ENSP00000319979.3" ; tag basic appris_principal_1 CCDS ; transcript_id "B3GNTL1--SLC9A8^ENST00000320865.3" ; transcript_name "B3GNTL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B3GNTL1--SLC9A8 HAVANA gene 24836 46596 . + . FI_gene_label "SLC9A8^ENSG00000197818.12" ; ID "B3GNTL1--SLC9A8^SLC9A8^ENSG00000197818.12" ; ccdsid "CCDS13421.1" ; exon_id "ENSE00001958508.2" ; exon_number 1 ; gene_id "B3GNTL1--SLC9A8^SLC9A8^ENSG00000197818.12" ; gene_name SLC9A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032710.4" ; havana_transcript "OTTHUMT00000106483.3" ; hgnc_id "HGNC:20728" ; level 2 ; orig_coord_info "chr20,49812923,49812948,+" ; protein_id "ENSP00000354966.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B3GNTL1--SLC9A8^ENST00000361573.3" ; transcript_name "SLC9A8-201" ; transcript_support_level 1 ; transcript_type protein_coding
B3GNTL1--SLC9A8 HAVANA mRNA 24836 46596 . + . FI_gene_label "SLC9A8^ENSG00000197818.12" ; ID "B3GNTL1--SLC9A8^ENST00000361573.3" ; Parent "B3GNTL1--SLC9A8^SLC9A8^ENSG00000197818.12" ; ccdsid "CCDS13421.1" ; exon_id "ENSE00001958508.2" ; exon_number 1 ; gene_id "B3GNTL1--SLC9A8^SLC9A8^ENSG00000197818.12" ; gene_name SLC9A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032710.4" ; havana_transcript "OTTHUMT00000106483.3" ; hgnc_id "HGNC:20728" ; level 2 ; orig_coord_info "chr20,49812923,49812948,+" ; protein_id "ENSP00000354966.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B3GNTL1--SLC9A8^ENST00000361573.3" ; transcript_name "SLC9A8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS1--AL136102.1 HAVANA gene 1050 15765 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "BCAS1--AL136102.1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "BCAS1--AL136102.1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "BCAS1--AL136102.1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS1--AL136102.1 HAVANA mRNA 1050 15765 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "BCAS1--AL136102.1^ENST00000371435.6" ; Parent "BCAS1--AL136102.1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "BCAS1--AL136102.1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "BCAS1--AL136102.1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS1--AL139351.1 HAVANA gene 1050 15765 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "BCAS1--AL139351.1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "BCAS1--AL139351.1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "BCAS1--AL139351.1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS1--AL139351.1 HAVANA mRNA 1050 15765 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "BCAS1--AL139351.1^ENST00000371435.6" ; Parent "BCAS1--AL139351.1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "BCAS1--AL139351.1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "BCAS1--AL139351.1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--AC104162.1 HAVANA gene 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--AC104162.1^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--AC104162.1^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--AC104162.1^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--AC104162.1 HAVANA mRNA 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--AC104162.1^ENST00000390652.9" ; Parent "BCAS3--AC104162.1^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--AC104162.1^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--AC104162.1^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--ATXN7 HAVANA gene 60934 94748 . + . FI_gene_label "ATXN7^ENSG00000163635.20" ; ID "BCAS3--ATXN7^ATXN7^ENSG00000163635.20" ; ccdsid "CCDS43102.1" ; exon_id "ENSE00003898371.1" ; exon_number 3 ; gene_id "BCAS3--ATXN7^ATXN7^ENSG00000163635.20" ; gene_name ATXN7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192515.2" ; havana_transcript "OTTHUMT00000352070.1" ; hgnc_id "HGNC:10560" ; level 2 ; orig_coord_info "chr3,63912599,63912923,+" ; protein_id "ENSP00000295900.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "BCAS3--ATXN7^ENST00000295900.10" ; transcript_name "ATXN7-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--ATXN7 HAVANA mRNA 60934 94748 . + . FI_gene_label "ATXN7^ENSG00000163635.20" ; ID "BCAS3--ATXN7^ENST00000295900.10" ; Parent "BCAS3--ATXN7^ATXN7^ENSG00000163635.20" ; ccdsid "CCDS43102.1" ; exon_id "ENSE00003898371.1" ; exon_number 3 ; gene_id "BCAS3--ATXN7^ATXN7^ENSG00000163635.20" ; gene_name ATXN7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192515.2" ; havana_transcript "OTTHUMT00000352070.1" ; hgnc_id "HGNC:10560" ; level 2 ; orig_coord_info "chr3,63912599,63912923,+" ; protein_id "ENSP00000295900.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "BCAS3--ATXN7^ENST00000295900.10" ; transcript_name "ATXN7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--ATXN7 HAVANA gene 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--ATXN7^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--ATXN7^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--ATXN7^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--ATXN7 HAVANA mRNA 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--ATXN7^ENST00000390652.9" ; Parent "BCAS3--ATXN7^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--ATXN7^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--ATXN7^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--SNTN HAVANA gene 59529 64342 . + . FI_gene_label "SNTN^ENSG00000188817.8" ; ID "BCAS3--SNTN^SNTN^ENSG00000188817.8" ; ccdsid "CCDS33779.1" ; exon_id "ENSE00001387635.3" ; exon_number 1 ; gene_id "BCAS3--SNTN^SNTN^ENSG00000188817.8" ; gene_name SNTN ; gene_type protein_coding ; havana_gene "OTTHUMG00000158766.3" ; havana_transcript "OTTHUMT00000352094.2" ; hgnc_id "HGNC:33706" ; level 2 ; orig_coord_info "chr3,63652688,63652797,+" ; protein_id "ENSP00000341442.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCAS3--SNTN^ENST00000343837.8" ; transcript_name "SNTN-201" ; transcript_support_level 2 ; transcript_type protein_coding
BCAS3--SNTN HAVANA mRNA 59529 64342 . + . FI_gene_label "SNTN^ENSG00000188817.8" ; ID "BCAS3--SNTN^ENST00000343837.8" ; Parent "BCAS3--SNTN^SNTN^ENSG00000188817.8" ; ccdsid "CCDS33779.1" ; exon_id "ENSE00001387635.3" ; exon_number 1 ; gene_id "BCAS3--SNTN^SNTN^ENSG00000188817.8" ; gene_name SNTN ; gene_type protein_coding ; havana_gene "OTTHUMG00000158766.3" ; havana_transcript "OTTHUMT00000352094.2" ; hgnc_id "HGNC:33706" ; level 2 ; orig_coord_info "chr3,63652688,63652797,+" ; protein_id "ENSP00000341442.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCAS3--SNTN^ENST00000343837.8" ; transcript_name "SNTN-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--SNTN HAVANA gene 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--SNTN^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--SNTN^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--SNTN^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--SNTN HAVANA mRNA 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--SNTN^ENST00000390652.9" ; Parent "BCAS3--SNTN^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--SNTN^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--SNTN^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS4--BCAS3 HAVANA gene 1001 9311 . + . FI_gene_label "BCAS4^ENSG00000124243.18" ; ID "BCAS4--BCAS3^BCAS4^ENSG00000124243.18" ; ccdsid "CCDS33487.1" ; exon_id "ENSE00001952820.1" ; exon_number 1 ; gene_id "BCAS4--BCAS3^BCAS4^ENSG00000124243.18" ; gene_name BCAS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032735.7" ; havana_transcript "OTTHUMT00000079700.1" ; hgnc_id "HGNC:14367" ; level 2 ; orig_coord_info "chr20,50794994,50795173,+" ; protein_id "ENSP00000351642.5" ; tag basic appris_principal_2 CCDS ; transcript_id "BCAS4--BCAS3^ENST00000358791.9" ; transcript_name "BCAS4-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS4--BCAS3 HAVANA mRNA 1001 9311 . + . FI_gene_label "BCAS4^ENSG00000124243.18" ; ID "BCAS4--BCAS3^ENST00000358791.9" ; Parent "BCAS4--BCAS3^BCAS4^ENSG00000124243.18" ; ccdsid "CCDS33487.1" ; exon_id "ENSE00001952820.1" ; exon_number 1 ; gene_id "BCAS4--BCAS3^BCAS4^ENSG00000124243.18" ; gene_name BCAS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032735.7" ; havana_transcript "OTTHUMT00000079700.1" ; hgnc_id "HGNC:14367" ; level 2 ; orig_coord_info "chr20,50794994,50795173,+" ; protein_id "ENSP00000351642.5" ; tag basic appris_principal_2 CCDS ; transcript_id "BCAS4--BCAS3^ENST00000358791.9" ; transcript_name "BCAS4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS4--BCAS3 HAVANA gene 18247 73338 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS4--BCAS3^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS4--BCAS3^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS4--BCAS3^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS4--BCAS3 HAVANA mRNA 18247 73338 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS4--BCAS3^ENST00000390652.9" ; Parent "BCAS4--BCAS3^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS4--BCAS3^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS4--BCAS3^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BEND7--PRPF18 HAVANA gene 26287 33210 . + . FI_gene_label "PRPF18^ENSG00000165630.14" ; ID "BEND7--PRPF18^PRPF18^ENSG00000165630.14" ; exon_id "ENSE00001221275.3" ; exon_number 2 ; gene_id "BEND7--PRPF18^PRPF18^ENSG00000165630.14" ; gene_name PRPF18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017702.3" ; havana_transcript "OTTHUMT00000046880.2" ; hgnc_id "HGNC:17351" ; level 2 ; orig_coord_info "chr10,13591868,13591888,+" ; protein_id "ENSP00000367824.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "BEND7--PRPF18^ENST00000320054.4" ; transcript_name "PRPF18-201" ; transcript_support_level 5 ; transcript_type protein_coding
BEND7--PRPF18 HAVANA mRNA 26287 33210 . + . FI_gene_label "PRPF18^ENSG00000165630.14" ; ID "BEND7--PRPF18^ENST00000320054.4" ; Parent "BEND7--PRPF18^PRPF18^ENSG00000165630.14" ; exon_id "ENSE00001221275.3" ; exon_number 2 ; gene_id "BEND7--PRPF18^PRPF18^ENSG00000165630.14" ; gene_name PRPF18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017702.3" ; havana_transcript "OTTHUMT00000046880.2" ; hgnc_id "HGNC:17351" ; level 2 ; orig_coord_info "chr10,13591868,13591888,+" ; protein_id "ENSP00000367824.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "BEND7--PRPF18^ENST00000320054.4" ; transcript_name "PRPF18-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BEND7--PRPF18 HAVANA gene 5586 23104 . + . FI_gene_label "BEND7^ENSG00000165626.17" ; ID "BEND7--PRPF18^BEND7^ENSG00000165626.17" ; ccdsid "CCDS7099.1" ; exon_id "ENSE00003662027.1" ; exon_number 3 ; gene_id "BEND7--PRPF18^BEND7^ENSG00000165626.17" ; gene_name BEND7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017699.4" ; havana_transcript "OTTHUMT00000046863.1" ; hgnc_id "HGNC:23514" ; level 2 ; orig_coord_info "chr10,13499778,13500069,-" ; protein_id "ENSP00000345773.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "BEND7--PRPF18^ENST00000341083.7" ; transcript_name "BEND7-201" ; transcript_support_level 2 ; transcript_type protein_coding
BEND7--PRPF18 HAVANA mRNA 5586 23104 . + . FI_gene_label "BEND7^ENSG00000165626.17" ; ID "BEND7--PRPF18^ENST00000341083.7" ; Parent "BEND7--PRPF18^BEND7^ENSG00000165626.17" ; ccdsid "CCDS7099.1" ; exon_id "ENSE00003662027.1" ; exon_number 3 ; gene_id "BEND7--PRPF18^BEND7^ENSG00000165626.17" ; gene_name BEND7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017699.4" ; havana_transcript "OTTHUMT00000046863.1" ; hgnc_id "HGNC:23514" ; level 2 ; orig_coord_info "chr10,13499778,13500069,-" ; protein_id "ENSP00000345773.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "BEND7--PRPF18^ENST00000341083.7" ; transcript_name "BEND7-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
BMP7--PRICKLE2-AS1 HAVANA gene 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--PRICKLE2-AS1^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--PRICKLE2-AS1^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--PRICKLE2-AS1^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
BMP7--PRICKLE2-AS1 HAVANA mRNA 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--PRICKLE2-AS1^ENST00000395863.8" ; Parent "BMP7--PRICKLE2-AS1^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--PRICKLE2-AS1^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--PRICKLE2-AS1^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BMP7--PTPRT HAVANA gene 20737 65996 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "BMP7--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "BMP7--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "BMP7--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
BMP7--PTPRT HAVANA mRNA 20737 65996 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "BMP7--PTPRT^ENST00000356100.6" ; Parent "BMP7--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "BMP7--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "BMP7--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BMP7--PTPRT HAVANA gene 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--PTPRT^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--PTPRT^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--PTPRT^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
BMP7--PTPRT HAVANA mRNA 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--PTPRT^ENST00000395863.8" ; Parent "BMP7--PTPRT^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--PTPRT^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--PTPRT^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BMP7--SULF2 HAVANA gene 20530 44562 . + . FI_gene_label "SULF2^ENSG00000196562.14" ; ID "BMP7--SULF2^SULF2^ENSG00000196562.14" ; ccdsid "CCDS13408.1" ; exon_id "ENSE00003553626.1" ; exon_number 2 ; gene_id "BMP7--SULF2^SULF2^ENSG00000196562.14" ; gene_name SULF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032675.9" ; havana_transcript "OTTHUMT00000079606.1" ; hgnc_id "HGNC:20392" ; level 2 ; orig_coord_info "chr20,47757189,47757363,-" ; protein_id "ENSP00000353007.4" ; tag basic appris_principal_4 CCDS ; transcript_id "BMP7--SULF2^ENST00000359930.8" ; transcript_name "SULF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BMP7--SULF2 HAVANA mRNA 20530 44562 . + . FI_gene_label "SULF2^ENSG00000196562.14" ; ID "BMP7--SULF2^ENST00000359930.8" ; Parent "BMP7--SULF2^SULF2^ENSG00000196562.14" ; ccdsid "CCDS13408.1" ; exon_id "ENSE00003553626.1" ; exon_number 2 ; gene_id "BMP7--SULF2^SULF2^ENSG00000196562.14" ; gene_name SULF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032675.9" ; havana_transcript "OTTHUMT00000079606.1" ; hgnc_id "HGNC:20392" ; level 2 ; orig_coord_info "chr20,47757189,47757363,-" ; protein_id "ENSP00000353007.4" ; tag basic appris_principal_4 CCDS ; transcript_id "BMP7--SULF2^ENST00000359930.8" ; transcript_name "SULF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BMP7--SULF2 HAVANA gene 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--SULF2^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--SULF2^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--SULF2^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
BMP7--SULF2 HAVANA mRNA 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--SULF2^ENST00000395863.8" ; Parent "BMP7--SULF2^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--SULF2^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--SULF2^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD180--AC112206.2 HAVANA gene 1001 8668 . + . FI_gene_label "CD180^ENSG00000134061.5" ; ID "CD180--AC112206.2^CD180^ENSG00000134061.5" ; ccdsid "CCDS3992.1" ; exon_id "ENSE00000837139.3" ; exon_number 1 ; gene_id "CD180--AC112206.2^CD180^ENSG00000134061.5" ; gene_name CD180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131229.3" ; havana_transcript "OTTHUMT00000253973.3" ; hgnc_id "HGNC:6726" ; level 2 ; orig_coord_info "chr5,67196552,67196641,-" ; protein_id "ENSP00000256447.4" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD180--AC112206.2^ENST00000256447.5" ; transcript_name "CD180-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD180--AC112206.2 HAVANA mRNA 1001 8668 . + . FI_gene_label "CD180^ENSG00000134061.5" ; ID "CD180--AC112206.2^ENST00000256447.5" ; Parent "CD180--AC112206.2^CD180^ENSG00000134061.5" ; ccdsid "CCDS3992.1" ; exon_id "ENSE00000837139.3" ; exon_number 1 ; gene_id "CD180--AC112206.2^CD180^ENSG00000134061.5" ; gene_name CD180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131229.3" ; havana_transcript "OTTHUMT00000253973.3" ; hgnc_id "HGNC:6726" ; level 2 ; orig_coord_info "chr5,67196552,67196641,-" ; protein_id "ENSP00000256447.4" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD180--AC112206.2^ENST00000256447.5" ; transcript_name "CD180-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHEK2--Z93930.2 HAVANA gene 1589 24603 . + . FI_gene_label "CHEK2^ENSG00000183765.23" ; ID "CHEK2--Z93930.2^CHEK2^ENSG00000183765.23" ; ccdsid "CCDS13844.1" ; exon_id "ENSE00003478809.1" ; exon_number 2 ; gene_id "CHEK2--Z93930.2^CHEK2^ENSG00000183765.23" ; gene_name CHEK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151023.24" ; havana_transcript "OTTHUMT00000321281.1" ; hgnc_id "HGNC:16627" ; level 2 ; orig_coord_info "chr22,28734403,28734721,-" ; protein_id "ENSP00000329012.5" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "CHEK2--Z93930.2^ENST00000348295.7" ; transcript_name "CHEK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
CHEK2--Z93930.2 HAVANA mRNA 1589 24603 . + . FI_gene_label "CHEK2^ENSG00000183765.23" ; ID "CHEK2--Z93930.2^ENST00000348295.7" ; Parent "CHEK2--Z93930.2^CHEK2^ENSG00000183765.23" ; ccdsid "CCDS13844.1" ; exon_id "ENSE00003478809.1" ; exon_number 2 ; gene_id "CHEK2--Z93930.2^CHEK2^ENSG00000183765.23" ; gene_name CHEK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151023.24" ; havana_transcript "OTTHUMT00000321281.1" ; hgnc_id "HGNC:16627" ; level 2 ; orig_coord_info "chr22,28734403,28734721,-" ; protein_id "ENSP00000329012.5" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "CHEK2--Z93930.2^ENST00000348295.7" ; transcript_name "CHEK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CYRIB--ASAP1 ENSEMBL gene 30230 73876 . + . FI_gene_label "ASAP1^ENSG00000153317.15" ; ID "CYRIB--ASAP1^ASAP1^ENSG00000153317.15" ; ccdsid "CCDS75788.1" ; exon_id "ENSE00003501495.1" ; exon_number 3 ; gene_id "CYRIB--ASAP1^ASAP1^ENSG00000153317.15" ; gene_name ASAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164772.4" ; hgnc_id "HGNC:2720" ; level 3 ; orig_coord_info "chr8,130361670,130361707,-" ; protein_id "ENSP00000350297.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CYRIB--ASAP1^ENST00000357668.2" ; transcript_name "ASAP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
CYRIB--ASAP1 ENSEMBL mRNA 30230 73876 . + . FI_gene_label "ASAP1^ENSG00000153317.15" ; ID "CYRIB--ASAP1^ENST00000357668.2" ; Parent "CYRIB--ASAP1^ASAP1^ENSG00000153317.15" ; ccdsid "CCDS75788.1" ; exon_id "ENSE00003501495.1" ; exon_number 3 ; gene_id "CYRIB--ASAP1^ASAP1^ENSG00000153317.15" ; gene_name ASAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164772.4" ; hgnc_id "HGNC:2720" ; level 3 ; orig_coord_info "chr8,130361670,130361707,-" ; protein_id "ENSP00000350297.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CYRIB--ASAP1^ENST00000357668.2" ; transcript_name "ASAP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CYRIB--ASAP1 HAVANA gene 1679 25338 . + . FI_gene_label "CYRIB^ENSG00000153310.19" ; ID "CYRIB--ASAP1^CYRIB^ENSG00000153310.19" ; ccdsid "CCDS6361.1" ; exon_id "ENSE00003596463.1" ; exon_number 6 ; gene_id "CYRIB--ASAP1^CYRIB^ENSG00000153310.19" ; gene_name CYRIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000164805.4" ; havana_transcript "OTTHUMT00000380386.1" ; hgnc_id "HGNC:25216" ; level 2 ; orig_coord_info "chr8,129879389,129879461,-" ; protein_id "ENSP00000384880.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CYRIB--ASAP1^ENST00000401979.6" ; transcript_name "CYRIB-201" ; transcript_support_level 2 ; transcript_type protein_coding
CYRIB--ASAP1 HAVANA mRNA 1679 25338 . + . FI_gene_label "CYRIB^ENSG00000153310.19" ; ID "CYRIB--ASAP1^ENST00000401979.6" ; Parent "CYRIB--ASAP1^CYRIB^ENSG00000153310.19" ; ccdsid "CCDS6361.1" ; exon_id "ENSE00003596463.1" ; exon_number 6 ; gene_id "CYRIB--ASAP1^CYRIB^ENSG00000153310.19" ; gene_name CYRIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000164805.4" ; havana_transcript "OTTHUMT00000380386.1" ; hgnc_id "HGNC:25216" ; level 2 ; orig_coord_info "chr8,129879389,129879461,-" ; protein_id "ENSP00000384880.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CYRIB--ASAP1^ENST00000401979.6" ; transcript_name "CYRIB-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DDX42--RN7SKP33 HAVANA gene 1588 21420 . + . FI_gene_label "DDX42^ENSG00000198231.13" ; ID "DDX42--RN7SKP33^DDX42^ENSG00000198231.13" ; exon_id "ENSE00003656551.1" ; exon_number 2 ; gene_id "DDX42--RN7SKP33^DDX42^ENSG00000198231.13" ; gene_name DDX42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179011.5" ; havana_transcript "OTTHUMT00000444370.2" ; hgnc_id "HGNC:18676" ; level 2 ; orig_coord_info "chr17,63792548,63792562,+" ; protein_id "ENSP00000352308.5" ; tag basic appris_alternative_2 ; transcript_id "DDX42--RN7SKP33^ENST00000359353.9" ; transcript_name "DDX42-201" ; transcript_support_level 5 ; transcript_type protein_coding
DDX42--RN7SKP33 HAVANA mRNA 1588 21420 . + . FI_gene_label "DDX42^ENSG00000198231.13" ; ID "DDX42--RN7SKP33^ENST00000359353.9" ; Parent "DDX42--RN7SKP33^DDX42^ENSG00000198231.13" ; exon_id "ENSE00003656551.1" ; exon_number 2 ; gene_id "DDX42--RN7SKP33^DDX42^ENSG00000198231.13" ; gene_name DDX42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179011.5" ; havana_transcript "OTTHUMT00000444370.2" ; hgnc_id "HGNC:18676" ; level 2 ; orig_coord_info "chr17,63792548,63792562,+" ; protein_id "ENSP00000352308.5" ; tag basic appris_alternative_2 ; transcript_id "DDX42--RN7SKP33^ENST00000359353.9" ; transcript_name "DDX42-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DDX42--SLC2A10 HAVANA gene 25340 34958 . + . FI_gene_label "SLC2A10^ENSG00000197496.6" ; ID "DDX42--SLC2A10^SLC2A10^ENSG00000197496.6" ; ccdsid "CCDS13402.1" ; exon_id "ENSE00001404251.2" ; exon_number 1 ; gene_id "DDX42--SLC2A10^SLC2A10^ENSG00000197496.6" ; gene_name SLC2A10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032657.5" ; havana_transcript "OTTHUMT00000079578.4" ; hgnc_id "HGNC:13444" ; level 2 ; orig_coord_info "chr20,46709737,46709740,+" ; protein_id "ENSP00000352216.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX42--SLC2A10^ENST00000359271.4" ; transcript_name "SLC2A10-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDX42--SLC2A10 HAVANA mRNA 25340 34958 . + . FI_gene_label "SLC2A10^ENSG00000197496.6" ; ID "DDX42--SLC2A10^ENST00000359271.4" ; Parent "DDX42--SLC2A10^SLC2A10^ENSG00000197496.6" ; ccdsid "CCDS13402.1" ; exon_id "ENSE00001404251.2" ; exon_number 1 ; gene_id "DDX42--SLC2A10^SLC2A10^ENSG00000197496.6" ; gene_name SLC2A10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032657.5" ; havana_transcript "OTTHUMT00000079578.4" ; hgnc_id "HGNC:13444" ; level 2 ; orig_coord_info "chr20,46709737,46709740,+" ; protein_id "ENSP00000352216.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX42--SLC2A10^ENST00000359271.4" ; transcript_name "SLC2A10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDX42--SLC2A10 HAVANA gene 1588 21420 . + . FI_gene_label "DDX42^ENSG00000198231.13" ; ID "DDX42--SLC2A10^DDX42^ENSG00000198231.13" ; exon_id "ENSE00003656551.1" ; exon_number 2 ; gene_id "DDX42--SLC2A10^DDX42^ENSG00000198231.13" ; gene_name DDX42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179011.5" ; havana_transcript "OTTHUMT00000444370.2" ; hgnc_id "HGNC:18676" ; level 2 ; orig_coord_info "chr17,63792548,63792562,+" ; protein_id "ENSP00000352308.5" ; tag basic appris_alternative_2 ; transcript_id "DDX42--SLC2A10^ENST00000359353.9" ; transcript_name "DDX42-201" ; transcript_support_level 5 ; transcript_type protein_coding
DDX42--SLC2A10 HAVANA mRNA 1588 21420 . + . FI_gene_label "DDX42^ENSG00000198231.13" ; ID "DDX42--SLC2A10^ENST00000359353.9" ; Parent "DDX42--SLC2A10^DDX42^ENSG00000198231.13" ; exon_id "ENSE00003656551.1" ; exon_number 2 ; gene_id "DDX42--SLC2A10^DDX42^ENSG00000198231.13" ; gene_name DDX42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179011.5" ; havana_transcript "OTTHUMT00000444370.2" ; hgnc_id "HGNC:18676" ; level 2 ; orig_coord_info "chr17,63792548,63792562,+" ; protein_id "ENSP00000352308.5" ; tag basic appris_alternative_2 ; transcript_id "DDX42--SLC2A10^ENST00000359353.9" ; transcript_name "DDX42-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DENND1A--WNK2 HAVANA gene 43214 76864 . + . FI_gene_label "WNK2^ENSG00000165238.16" ; ID "DENND1A--WNK2^WNK2^ENSG00000165238.16" ; ccdsid "CCDS75858.1" ; exon_id "ENSE00003575540.1" ; exon_number 1 ; gene_id "DENND1A--WNK2^WNK2^ENSG00000165238.16" ; gene_name WNK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020247.4" ; havana_transcript "OTTHUMT00000317359.1" ; hgnc_id "HGNC:14542" ; level 2 ; orig_coord_info "chr9,93184930,93185610,+" ; protein_id "ENSP00000297954.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "DENND1A--WNK2^ENST00000297954.8" ; transcript_name "WNK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DENND1A--WNK2 HAVANA mRNA 43214 76864 . + . FI_gene_label "WNK2^ENSG00000165238.16" ; ID "DENND1A--WNK2^ENST00000297954.8" ; Parent "DENND1A--WNK2^WNK2^ENSG00000165238.16" ; ccdsid "CCDS75858.1" ; exon_id "ENSE00003575540.1" ; exon_number 1 ; gene_id "DENND1A--WNK2^WNK2^ENSG00000165238.16" ; gene_name WNK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020247.4" ; havana_transcript "OTTHUMT00000317359.1" ; hgnc_id "HGNC:14542" ; level 2 ; orig_coord_info "chr9,93184930,93185610,+" ; protein_id "ENSP00000297954.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "DENND1A--WNK2^ENST00000297954.8" ; transcript_name "WNK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DENND1A--WNK2 HAVANA gene 1001 28316 . + . FI_gene_label "DENND1A^ENSG00000119522.16" ; ID "DENND1A--WNK2^DENND1A^ENSG00000119522.16" ; ccdsid "CCDS87687.1" ; exon_id "ENSE00003643105.1" ; exon_number 2 ; gene_id "DENND1A--WNK2^DENND1A^ENSG00000119522.16" ; gene_name DENND1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000020643.1" ; havana_transcript "OTTHUMT00000053998.1" ; hgnc_id "HGNC:29324" ; level 2 ; orig_coord_info "chr9,123878951,123878992,-" ; protein_id "ENSP00000362720.1" ; tag basic CCDS ; transcript_id "DENND1A--WNK2^ENST00000373618.1" ; transcript_name "DENND1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
DENND1A--WNK2 HAVANA mRNA 1001 28316 . + . FI_gene_label "DENND1A^ENSG00000119522.16" ; ID "DENND1A--WNK2^ENST00000373618.1" ; Parent "DENND1A--WNK2^DENND1A^ENSG00000119522.16" ; ccdsid "CCDS87687.1" ; exon_id "ENSE00003643105.1" ; exon_number 2 ; gene_id "DENND1A--WNK2^DENND1A^ENSG00000119522.16" ; gene_name DENND1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000020643.1" ; havana_transcript "OTTHUMT00000053998.1" ; hgnc_id "HGNC:29324" ; level 2 ; orig_coord_info "chr9,123878951,123878992,-" ; protein_id "ENSP00000362720.1" ; tag basic CCDS ; transcript_id "DENND1A--WNK2^ENST00000373618.1" ; transcript_name "DENND1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DEPDC1B--ELOVL7 HAVANA gene 1025 16919 . + . FI_gene_label "DEPDC1B^ENSG00000035499.13" ; ID "DEPDC1B--ELOVL7^DEPDC1B^ENSG00000035499.13" ; ccdsid "CCDS3977.1" ; exon_id "ENSE00001838018.2" ; exon_number 1 ; gene_id "DEPDC1B--ELOVL7^DEPDC1B^ENSG00000035499.13" ; gene_name DEPDC1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000097083.4" ; havana_transcript "OTTHUMT00000214207.2" ; hgnc_id "HGNC:24902" ; level 2 ; orig_coord_info "chr5,60700046,60700093,-" ; protein_id "ENSP00000265036.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DEPDC1B--ELOVL7^ENST00000265036.10" ; transcript_name "DEPDC1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
DEPDC1B--ELOVL7 HAVANA mRNA 1025 16919 . + . FI_gene_label "DEPDC1B^ENSG00000035499.13" ; ID "DEPDC1B--ELOVL7^ENST00000265036.10" ; Parent "DEPDC1B--ELOVL7^DEPDC1B^ENSG00000035499.13" ; ccdsid "CCDS3977.1" ; exon_id "ENSE00001838018.2" ; exon_number 1 ; gene_id "DEPDC1B--ELOVL7^DEPDC1B^ENSG00000035499.13" ; gene_name DEPDC1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000097083.4" ; havana_transcript "OTTHUMT00000214207.2" ; hgnc_id "HGNC:24902" ; level 2 ; orig_coord_info "chr5,60700046,60700093,-" ; protein_id "ENSP00000265036.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DEPDC1B--ELOVL7^ENST00000265036.10" ; transcript_name "DEPDC1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DEPDC1B--ELOVL7 ENSEMBL gene 19920 36742 . + . FI_gene_label "ELOVL7^ENSG00000164181.14" ; ID "DEPDC1B--ELOVL7^ELOVL7^ENSG00000164181.14" ; ccdsid "CCDS34164.1" ; exon_id "ENSE00003654440.1" ; exon_number 2 ; gene_id "DEPDC1B--ELOVL7^ELOVL7^ENSG00000164181.14" ; gene_name ELOVL7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162254.3" ; hgnc_id "HGNC:26292" ; level 3 ; orig_coord_info "chr5,60787334,60787397,-" ; protein_id "ENSP00000402634.1" ; tag basic appris_principal_1 CCDS ; transcript_id "DEPDC1B--ELOVL7^ENST00000425382.5" ; transcript_name "ELOVL7-201" ; transcript_support_level 5 ; transcript_type protein_coding
DEPDC1B--ELOVL7 ENSEMBL mRNA 19920 36742 . + . FI_gene_label "ELOVL7^ENSG00000164181.14" ; ID "DEPDC1B--ELOVL7^ENST00000425382.5" ; Parent "DEPDC1B--ELOVL7^ELOVL7^ENSG00000164181.14" ; ccdsid "CCDS34164.1" ; exon_id "ENSE00003654440.1" ; exon_number 2 ; gene_id "DEPDC1B--ELOVL7^ELOVL7^ENSG00000164181.14" ; gene_name ELOVL7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162254.3" ; hgnc_id "HGNC:26292" ; level 3 ; orig_coord_info "chr5,60787334,60787397,-" ; protein_id "ENSP00000402634.1" ; tag basic appris_principal_1 CCDS ; transcript_id "DEPDC1B--ELOVL7^ENST00000425382.5" ; transcript_name "ELOVL7-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DHX30--AP001961.1 HAVANA gene 1257 23841 . + . FI_gene_label "DHX30^ENSG00000132153.15" ; ID "DHX30--AP001961.1^DHX30^ENSG00000132153.15" ; ccdsid "CCDS87074.1" ; exon_id "ENSE00003612531.1" ; exon_number 5 ; gene_id "DHX30--AP001961.1^DHX30^ENSG00000132153.15" ; gene_name DHX30 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133522.3" ; havana_transcript "OTTHUMT00000346137.1" ; hgnc_id "HGNC:16716" ; level 1 ; orig_coord_info "chr3,47818078,47818117,+" ; protein_id "ENSP00000343442.4" ; tag dotter_confirmed not_organism_supported basic exp_conf CCDS ; transcript_id "DHX30--AP001961.1^ENST00000348968.8" ; transcript_name "DHX30-201" ; transcript_support_level 5 ; transcript_type protein_coding
DHX30--AP001961.1 HAVANA mRNA 1257 23841 . + . FI_gene_label "DHX30^ENSG00000132153.15" ; ID "DHX30--AP001961.1^ENST00000348968.8" ; Parent "DHX30--AP001961.1^DHX30^ENSG00000132153.15" ; ccdsid "CCDS87074.1" ; exon_id "ENSE00003612531.1" ; exon_number 5 ; gene_id "DHX30--AP001961.1^DHX30^ENSG00000132153.15" ; gene_name DHX30 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133522.3" ; havana_transcript "OTTHUMT00000346137.1" ; hgnc_id "HGNC:16716" ; level 1 ; orig_coord_info "chr3,47818078,47818117,+" ; protein_id "ENSP00000343442.4" ; tag dotter_confirmed not_organism_supported basic exp_conf CCDS ; transcript_id "DHX30--AP001961.1^ENST00000348968.8" ; transcript_name "DHX30-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DHX30--EMCN HAVANA gene 32347 51205 . + . FI_gene_label "EMCN^ENSG00000164035.10" ; ID "DHX30--EMCN^EMCN^ENSG00000164035.10" ; ccdsid "CCDS3655.1" ; exon_id "ENSE00001899740.2" ; exon_number 1 ; gene_id "DHX30--EMCN^EMCN^ENSG00000164035.10" ; gene_name EMCN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131051.7" ; havana_transcript "OTTHUMT00000253699.3" ; hgnc_id "HGNC:16041" ; level 2 ; orig_coord_info "chr4,100517851,100517914,-" ; protein_id "ENSP00000296420.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DHX30--EMCN^ENST00000296420.9" ; transcript_name "EMCN-201" ; transcript_support_level 1 ; transcript_type protein_coding
DHX30--EMCN HAVANA mRNA 32347 51205 . + . FI_gene_label "EMCN^ENSG00000164035.10" ; ID "DHX30--EMCN^ENST00000296420.9" ; Parent "DHX30--EMCN^EMCN^ENSG00000164035.10" ; ccdsid "CCDS3655.1" ; exon_id "ENSE00001899740.2" ; exon_number 1 ; gene_id "DHX30--EMCN^EMCN^ENSG00000164035.10" ; gene_name EMCN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131051.7" ; havana_transcript "OTTHUMT00000253699.3" ; hgnc_id "HGNC:16041" ; level 2 ; orig_coord_info "chr4,100517851,100517914,-" ; protein_id "ENSP00000296420.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DHX30--EMCN^ENST00000296420.9" ; transcript_name "EMCN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DHX30--EMCN HAVANA gene 1257 23841 . + . FI_gene_label "DHX30^ENSG00000132153.15" ; ID "DHX30--EMCN^DHX30^ENSG00000132153.15" ; ccdsid "CCDS87074.1" ; exon_id "ENSE00003612531.1" ; exon_number 5 ; gene_id "DHX30--EMCN^DHX30^ENSG00000132153.15" ; gene_name DHX30 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133522.3" ; havana_transcript "OTTHUMT00000346137.1" ; hgnc_id "HGNC:16716" ; level 1 ; orig_coord_info "chr3,47818078,47818117,+" ; protein_id "ENSP00000343442.4" ; tag dotter_confirmed not_organism_supported basic exp_conf CCDS ; transcript_id "DHX30--EMCN^ENST00000348968.8" ; transcript_name "DHX30-201" ; transcript_support_level 5 ; transcript_type protein_coding
DHX30--EMCN HAVANA mRNA 1257 23841 . + . FI_gene_label "DHX30^ENSG00000132153.15" ; ID "DHX30--EMCN^ENST00000348968.8" ; Parent "DHX30--EMCN^DHX30^ENSG00000132153.15" ; ccdsid "CCDS87074.1" ; exon_id "ENSE00003612531.1" ; exon_number 5 ; gene_id "DHX30--EMCN^DHX30^ENSG00000132153.15" ; gene_name DHX30 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133522.3" ; havana_transcript "OTTHUMT00000346137.1" ; hgnc_id "HGNC:16716" ; level 1 ; orig_coord_info "chr3,47818078,47818117,+" ; protein_id "ENSP00000343442.4" ; tag dotter_confirmed not_organism_supported basic exp_conf CCDS ; transcript_id "DHX30--EMCN^ENST00000348968.8" ; transcript_name "DHX30-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DSCAM--AC011921.1 HAVANA gene 1001 40969 . + . FI_gene_label "DSCAM^ENSG00000171587.15" ; ID "DSCAM--AC011921.1^DSCAM^ENSG00000171587.15" ; ccdsid "CCDS42929.1" ; exon_id "ENSE00001543050.2" ; exon_number 1 ; gene_id "DSCAM--AC011921.1^DSCAM^ENSG00000171587.15" ; gene_name DSCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000086732.2" ; havana_transcript "OTTHUMT00000195029.2" ; hgnc_id "HGNC:3039" ; level 2 ; orig_coord_info "chr21,40846619,40846661,-" ; protein_id "ENSP00000383303.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DSCAM--AC011921.1^ENST00000400454.6" ; transcript_name "DSCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
DSCAM--AC011921.1 HAVANA mRNA 1001 40969 . + . FI_gene_label "DSCAM^ENSG00000171587.15" ; ID "DSCAM--AC011921.1^ENST00000400454.6" ; Parent "DSCAM--AC011921.1^DSCAM^ENSG00000171587.15" ; ccdsid "CCDS42929.1" ; exon_id "ENSE00001543050.2" ; exon_number 1 ; gene_id "DSCAM--AC011921.1^DSCAM^ENSG00000171587.15" ; gene_name DSCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000086732.2" ; havana_transcript "OTTHUMT00000195029.2" ; hgnc_id "HGNC:3039" ; level 2 ; orig_coord_info "chr21,40846619,40846661,-" ; protein_id "ENSP00000383303.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DSCAM--AC011921.1^ENST00000400454.6" ; transcript_name "DSCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF3H--RAD21 HAVANA gene 1671 17177 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "EIF3H--RAD21^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "EIF3H--RAD21^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "EIF3H--RAD21^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
EIF3H--RAD21 HAVANA mRNA 1671 17177 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "EIF3H--RAD21^ENST00000276682.8" ; Parent "EIF3H--RAD21^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "EIF3H--RAD21^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "EIF3H--RAD21^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
EIF3H--RAD21 HAVANA gene 22881 39091 . + . FI_gene_label "RAD21^ENSG00000164754.15" ; ID "EIF3H--RAD21^RAD21^ENSG00000164754.15" ; ccdsid "CCDS6321.1" ; exon_id "ENSE00003464650.1" ; exon_number 2 ; gene_id "EIF3H--RAD21^RAD21^ENSG00000164754.15" ; gene_name RAD21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164959.4" ; havana_transcript "OTTHUMT00000381184.2" ; hgnc_id "HGNC:9811" ; level 2 ; orig_coord_info "chr8,116866586,116866729,-" ; protein_id "ENSP00000297338.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF3H--RAD21^ENST00000297338.7" ; transcript_name "RAD21-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF3H--RAD21 HAVANA mRNA 22881 39091 . + . FI_gene_label "RAD21^ENSG00000164754.15" ; ID "EIF3H--RAD21^ENST00000297338.7" ; Parent "EIF3H--RAD21^RAD21^ENSG00000164754.15" ; ccdsid "CCDS6321.1" ; exon_id "ENSE00003464650.1" ; exon_number 2 ; gene_id "EIF3H--RAD21^RAD21^ENSG00000164754.15" ; gene_name RAD21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164959.4" ; havana_transcript "OTTHUMT00000381184.2" ; hgnc_id "HGNC:9811" ; level 2 ; orig_coord_info "chr8,116866586,116866729,-" ; protein_id "ENSP00000297338.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF3H--RAD21^ENST00000297338.7" ; transcript_name "RAD21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ELOF1--ZNF823 HAVANA gene 1001 4947 . + . FI_gene_label "ELOF1^ENSG00000130165.10" ; ID "ELOF1--ZNF823^ELOF1^ENSG00000130165.10" ; ccdsid "CCDS12264.1" ; exon_id "ENSE00003469475.1" ; exon_number 2 ; gene_id "ELOF1--ZNF823^ELOF1^ENSG00000130165.10" ; gene_name ELOF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182034.3" ; hgnc_id "HGNC:28691" ; level 2 ; orig_coord_info "chr19,11554232,11554347,-" ; protein_id "ENSP00000252445.3" ; tag RNA_Seq_supported_only basic appris_principal_1 CCDS ; transcript_id "ELOF1--ZNF823^ENST00000252445.7" ; transcript_name "ELOF1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ELOF1--ZNF823 HAVANA mRNA 1001 4947 . + . FI_gene_label "ELOF1^ENSG00000130165.10" ; ID "ELOF1--ZNF823^ENST00000252445.7" ; Parent "ELOF1--ZNF823^ELOF1^ENSG00000130165.10" ; ccdsid "CCDS12264.1" ; exon_id "ENSE00003469475.1" ; exon_number 2 ; gene_id "ELOF1--ZNF823^ELOF1^ENSG00000130165.10" ; gene_name ELOF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182034.3" ; hgnc_id "HGNC:28691" ; level 2 ; orig_coord_info "chr19,11554232,11554347,-" ; protein_id "ENSP00000252445.3" ; tag RNA_Seq_supported_only basic appris_principal_1 CCDS ; transcript_id "ELOF1--ZNF823^ENST00000252445.7" ; transcript_name "ELOF1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ELOF1--ZNF823 HAVANA gene 9907 15099 . + . FI_gene_label "ZNF823^ENSG00000197933.13" ; ID "ELOF1--ZNF823^ZNF823^ENSG00000197933.13" ; ccdsid "CCDS45981.1" ; exon_id "ENSE00003526306.2" ; exon_number 1 ; gene_id "ELOF1--ZNF823^ZNF823^ENSG00000197933.13" ; gene_name ZNF823 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156528.5" ; havana_transcript "OTTHUMT00000344516.3" ; hgnc_id "HGNC:30936" ; level 2 ; orig_coord_info "chr19,11738817,11738819,-" ; protein_id "ENSP00000340683.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ELOF1--ZNF823^ENST00000341191.11" ; transcript_name "ZNF823-201" ; transcript_support_level 1 ; transcript_type protein_coding
ELOF1--ZNF823 HAVANA mRNA 9907 15099 . + . FI_gene_label "ZNF823^ENSG00000197933.13" ; ID "ELOF1--ZNF823^ENST00000341191.11" ; Parent "ELOF1--ZNF823^ZNF823^ENSG00000197933.13" ; ccdsid "CCDS45981.1" ; exon_id "ENSE00003526306.2" ; exon_number 1 ; gene_id "ELOF1--ZNF823^ZNF823^ENSG00000197933.13" ; gene_name ZNF823 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156528.5" ; havana_transcript "OTTHUMT00000344516.3" ; hgnc_id "HGNC:30936" ; level 2 ; orig_coord_info "chr19,11738817,11738819,-" ; protein_id "ENSP00000340683.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ELOF1--ZNF823^ENST00000341191.11" ; transcript_name "ZNF823-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ELP2--FP236383.3 HAVANA gene 1477 24749 . + . FI_gene_label "ELP2^ENSG00000134759.14" ; ID "ELP2--FP236383.3^ELP2^ENSG00000134759.14" ; ccdsid "CCDS56066.1" ; exon_id "ENSE00002248434.1" ; exon_number 1 ; gene_id "ELP2--FP236383.3^ELP2^ENSG00000134759.14" ; gene_name ELP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132589.6" ; havana_transcript "OTTHUMT00000396667.1" ; hgnc_id "HGNC:18248" ; level 1 ; orig_coord_info "chr18,36129934,36130071,+" ; protein_id "ENSP00000316051.6" ; tag basic exp_conf CCDS ; transcript_id "ELP2--FP236383.3^ENST00000350494.10" ; transcript_name "ELP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
ELP2--FP236383.3 HAVANA mRNA 1477 24749 . + . FI_gene_label "ELP2^ENSG00000134759.14" ; ID "ELP2--FP236383.3^ENST00000350494.10" ; Parent "ELP2--FP236383.3^ELP2^ENSG00000134759.14" ; ccdsid "CCDS56066.1" ; exon_id "ENSE00002248434.1" ; exon_number 1 ; gene_id "ELP2--FP236383.3^ELP2^ENSG00000134759.14" ; gene_name ELP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132589.6" ; havana_transcript "OTTHUMT00000396667.1" ; hgnc_id "HGNC:18248" ; level 1 ; orig_coord_info "chr18,36129934,36130071,+" ; protein_id "ENSP00000316051.6" ; tag basic exp_conf CCDS ; transcript_id "ELP2--FP236383.3^ENST00000350494.10" ; transcript_name "ELP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ESR1--CCDC170 HAVANA gene 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--CCDC170^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--CCDC170^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--CCDC170^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ESR1--CCDC170 HAVANA mRNA 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--CCDC170^ENST00000206249.8" ; Parent "ESR1--CCDC170^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--CCDC170^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--CCDC170^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ESR1--CCDC170 HAVANA gene 35052 50483 . + . FI_gene_label "CCDC170^ENSG00000120262.10" ; ID "ESR1--CCDC170^CCDC170^ENSG00000120262.10" ; ccdsid "CCDS43515.1" ; exon_id "ENSE00001952106.3" ; exon_number 1 ; gene_id "ESR1--CCDC170^CCDC170^ENSG00000120262.10" ; gene_name CCDC170 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015839.3" ; havana_transcript "OTTHUMT00000042727.3" ; hgnc_id "HGNC:21177" ; level 2 ; orig_coord_info "chr6,151494129,151494185,+" ; protein_id "ENSP00000239374.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--CCDC170^ENST00000239374.8" ; transcript_name "CCDC170-201" ; transcript_support_level 1 ; transcript_type protein_coding
ESR1--CCDC170 HAVANA mRNA 35052 50483 . + . FI_gene_label "CCDC170^ENSG00000120262.10" ; ID "ESR1--CCDC170^ENST00000239374.8" ; Parent "ESR1--CCDC170^CCDC170^ENSG00000120262.10" ; ccdsid "CCDS43515.1" ; exon_id "ENSE00001952106.3" ; exon_number 1 ; gene_id "ESR1--CCDC170^CCDC170^ENSG00000120262.10" ; gene_name CCDC170 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015839.3" ; havana_transcript "OTTHUMT00000042727.3" ; hgnc_id "HGNC:21177" ; level 2 ; orig_coord_info "chr6,151494129,151494185,+" ; protein_id "ENSP00000239374.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--CCDC170^ENST00000239374.8" ; transcript_name "CCDC170-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBRSL1--AC079031.2 HAVANA gene 1001 24675 . + . FI_gene_label "FBRSL1^ENSG00000112787.14" ; ID "FBRSL1--AC079031.2^FBRSL1^ENSG00000112787.14" ; ccdsid "CCDS45010.1" ; exon_id "ENSE00001762092.2" ; exon_number 1 ; gene_id "FBRSL1--AC079031.2^FBRSL1^ENSG00000112787.14" ; gene_name FBRSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167991.5" ; havana_transcript "OTTHUMT00000397404.2" ; hgnc_id "HGNC:29308" ; level 2 ; orig_coord_info "chr12,132490571,132490861,+" ; protein_id "ENSP00000396160.2" ; tag basic appris_principal_2 CCDS ; transcript_id "FBRSL1--AC079031.2^ENST00000434748.2" ; transcript_name "FBRSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBRSL1--AC079031.2 HAVANA mRNA 1001 24675 . + . FI_gene_label "FBRSL1^ENSG00000112787.14" ; ID "FBRSL1--AC079031.2^ENST00000434748.2" ; Parent "FBRSL1--AC079031.2^FBRSL1^ENSG00000112787.14" ; ccdsid "CCDS45010.1" ; exon_id "ENSE00001762092.2" ; exon_number 1 ; gene_id "FBRSL1--AC079031.2^FBRSL1^ENSG00000112787.14" ; gene_name FBRSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167991.5" ; havana_transcript "OTTHUMT00000397404.2" ; hgnc_id "HGNC:29308" ; level 2 ; orig_coord_info "chr12,132490571,132490861,+" ; protein_id "ENSP00000396160.2" ; tag basic appris_principal_2 CCDS ; transcript_id "FBRSL1--AC079031.2^ENST00000434748.2" ; transcript_name "FBRSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FOXA1--TTC6 HAVANA gene 1811 7345 . + . FI_gene_label "FOXA1^ENSG00000129514.8" ; ID "FOXA1--TTC6^FOXA1^ENSG00000129514.8" ; ccdsid "CCDS9665.1" ; exon_id "ENSE00001269598.5" ; exon_number 1 ; gene_id "FOXA1--TTC6^FOXA1^ENSG00000129514.8" ; gene_name FOXA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140253.4" ; havana_transcript "OTTHUMT00000276735.3" ; hgnc_id "HGNC:5021" ; level 2 ; orig_coord_info "chr14,37594901,37594972,-" ; protein_id "ENSP00000250448.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FOXA1--TTC6^ENST00000250448.5" ; transcript_name "FOXA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FOXA1--TTC6 HAVANA mRNA 1811 7345 . + . FI_gene_label "FOXA1^ENSG00000129514.8" ; ID "FOXA1--TTC6^ENST00000250448.5" ; Parent "FOXA1--TTC6^FOXA1^ENSG00000129514.8" ; ccdsid "CCDS9665.1" ; exon_id "ENSE00001269598.5" ; exon_number 1 ; gene_id "FOXA1--TTC6^FOXA1^ENSG00000129514.8" ; gene_name FOXA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140253.4" ; havana_transcript "OTTHUMT00000276735.3" ; hgnc_id "HGNC:5021" ; level 2 ; orig_coord_info "chr14,37594901,37594972,-" ; protein_id "ENSP00000250448.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FOXA1--TTC6^ENST00000250448.5" ; transcript_name "FOXA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FOXA1--TTC6 ENSEMBL gene 34982 50969 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "FOXA1--TTC6^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "FOXA1--TTC6^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "FOXA1--TTC6^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
FOXA1--TTC6 ENSEMBL mRNA 34982 50969 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "FOXA1--TTC6^ENST00000267368.11" ; Parent "FOXA1--TTC6^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "FOXA1--TTC6^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "FOXA1--TTC6^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GATAD2B--NUP210L ENSEMBL gene 26559 66243 . + . FI_gene_label "NUP210L^ENSG00000143552.9" ; ID "GATAD2B--NUP210L^NUP210L^ENSG00000143552.9" ; ccdsid "CCDS53370.1" ; exon_id "ENSE00002224107.1" ; exon_number 1 ; gene_id "GATAD2B--NUP210L^NUP210L^ENSG00000143552.9" ; gene_name NUP210L ; gene_type protein_coding ; havana_gene "OTTHUMG00000035852.3" ; hgnc_id "HGNC:29915" ; level 3 ; orig_coord_info "chr1,154154842,154155044,-" ; protein_id "ENSP00000271854.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "GATAD2B--NUP210L^ENST00000271854.3" ; transcript_name "NUP210L-201" ; transcript_support_level 5 ; transcript_type protein_coding
GATAD2B--NUP210L ENSEMBL mRNA 26559 66243 . + . FI_gene_label "NUP210L^ENSG00000143552.9" ; ID "GATAD2B--NUP210L^ENST00000271854.3" ; Parent "GATAD2B--NUP210L^NUP210L^ENSG00000143552.9" ; ccdsid "CCDS53370.1" ; exon_id "ENSE00002224107.1" ; exon_number 1 ; gene_id "GATAD2B--NUP210L^NUP210L^ENSG00000143552.9" ; gene_name NUP210L ; gene_type protein_coding ; havana_gene "OTTHUMG00000035852.3" ; hgnc_id "HGNC:29915" ; level 3 ; orig_coord_info "chr1,154154842,154155044,-" ; protein_id "ENSP00000271854.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "GATAD2B--NUP210L^ENST00000271854.3" ; transcript_name "NUP210L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GATAD2B--NUP210L HAVANA gene 1389 21511 . + . FI_gene_label "GATAD2B^ENSG00000143614.10" ; ID "GATAD2B--NUP210L^GATAD2B^ENSG00000143614.10" ; ccdsid "CCDS1054.1" ; exon_id "ENSE00001447689.1" ; exon_number 2 ; gene_id "GATAD2B--NUP210L^GATAD2B^ENSG00000143614.10" ; gene_name GATAD2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000037162.7" ; havana_transcript "OTTHUMT00000090305.3" ; hgnc_id "HGNC:30778" ; level 2 ; orig_coord_info "chr1,153828013,153828347,-" ; protein_id "ENSP00000357644.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GATAD2B--NUP210L^ENST00000368655.5" ; transcript_name "GATAD2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
GATAD2B--NUP210L HAVANA mRNA 1389 21511 . + . FI_gene_label "GATAD2B^ENSG00000143614.10" ; ID "GATAD2B--NUP210L^ENST00000368655.5" ; Parent "GATAD2B--NUP210L^GATAD2B^ENSG00000143614.10" ; ccdsid "CCDS1054.1" ; exon_id "ENSE00001447689.1" ; exon_number 2 ; gene_id "GATAD2B--NUP210L^GATAD2B^ENSG00000143614.10" ; gene_name GATAD2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000037162.7" ; havana_transcript "OTTHUMT00000090305.3" ; hgnc_id "HGNC:30778" ; level 2 ; orig_coord_info "chr1,153828013,153828347,-" ; protein_id "ENSP00000357644.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GATAD2B--NUP210L^ENST00000368655.5" ; transcript_name "GATAD2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GCN1--MSI1 HAVANA gene 47713 62901 . + . FI_gene_label "MSI1^ENSG00000135097.7" ; ID "GCN1--MSI1^MSI1^ENSG00000135097.7" ; ccdsid "CCDS9196.1" ; exon_id "ENSE00001207974.3" ; exon_number 1 ; gene_id "GCN1--MSI1^MSI1^ENSG00000135097.7" ; gene_name MSI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169344.3" ; havana_transcript "OTTHUMT00000403629.2" ; hgnc_id "HGNC:7330" ; level 2 ; orig_coord_info "chr12,120369033,120369091,-" ; protein_id "ENSP00000257552.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GCN1--MSI1^ENST00000257552.7" ; transcript_name "MSI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GCN1--MSI1 HAVANA mRNA 47713 62901 . + . FI_gene_label "MSI1^ENSG00000135097.7" ; ID "GCN1--MSI1^ENST00000257552.7" ; Parent "GCN1--MSI1^MSI1^ENSG00000135097.7" ; ccdsid "CCDS9196.1" ; exon_id "ENSE00001207974.3" ; exon_number 1 ; gene_id "GCN1--MSI1^MSI1^ENSG00000135097.7" ; gene_name MSI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169344.3" ; havana_transcript "OTTHUMT00000403629.2" ; hgnc_id "HGNC:7330" ; level 2 ; orig_coord_info "chr12,120369033,120369091,-" ; protein_id "ENSP00000257552.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GCN1--MSI1^ENST00000257552.7" ; transcript_name "MSI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GCN1--MSI1 HAVANA gene 1001 44712 . + . FI_gene_label "GCN1^ENSG00000089154.11" ; ID "GCN1--MSI1^GCN1^ENSG00000089154.11" ; ccdsid "CCDS41847.1" ; exon_id "ENSE00001260563.3" ; exon_number 1 ; gene_id "GCN1--MSI1^GCN1^ENSG00000089154.11" ; gene_name GCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169338.3" ; havana_transcript "OTTHUMT00000403592.3" ; hgnc_id "HGNC:4199" ; level 2 ; orig_coord_info "chr12,120194680,120194697,-" ; protein_id "ENSP00000300648.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GCN1--MSI1^ENST00000300648.7" ; transcript_name "GCN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GCN1--MSI1 HAVANA mRNA 1001 44712 . + . FI_gene_label "GCN1^ENSG00000089154.11" ; ID "GCN1--MSI1^ENST00000300648.7" ; Parent "GCN1--MSI1^GCN1^ENSG00000089154.11" ; ccdsid "CCDS41847.1" ; exon_id "ENSE00001260563.3" ; exon_number 1 ; gene_id "GCN1--MSI1^GCN1^ENSG00000089154.11" ; gene_name GCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169338.3" ; havana_transcript "OTTHUMT00000403592.3" ; hgnc_id "HGNC:4199" ; level 2 ; orig_coord_info "chr12,120194680,120194697,-" ; protein_id "ENSP00000300648.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GCN1--MSI1^ENST00000300648.7" ; transcript_name "GCN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRHL2--AP001207.3 HAVANA gene 1320 18721 . + . FI_gene_label "GRHL2^ENSG00000083307.12" ; ID "GRHL2--AP001207.3^GRHL2^ENSG00000083307.12" ; ccdsid "CCDS83312.1" ; exon_id "ENSE00003671771.1" ; exon_number 2 ; gene_id "GRHL2--AP001207.3^GRHL2^ENSG00000083307.12" ; gene_name GRHL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149915.5" ; havana_transcript "OTTHUMT00000313883.1" ; hgnc_id "HGNC:2799" ; level 2 ; orig_coord_info "chr8,101543269,101543436,+" ; protein_id "ENSP00000379260.1" ; tag basic CCDS ; transcript_id "GRHL2--AP001207.3^ENST00000395927.1" ; transcript_name "GRHL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
GRHL2--AP001207.3 HAVANA mRNA 1320 18721 . + . FI_gene_label "GRHL2^ENSG00000083307.12" ; ID "GRHL2--AP001207.3^ENST00000395927.1" ; Parent "GRHL2--AP001207.3^GRHL2^ENSG00000083307.12" ; ccdsid "CCDS83312.1" ; exon_id "ENSE00003671771.1" ; exon_number 2 ; gene_id "GRHL2--AP001207.3^GRHL2^ENSG00000083307.12" ; gene_name GRHL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149915.5" ; havana_transcript "OTTHUMT00000313883.1" ; hgnc_id "HGNC:2799" ; level 2 ; orig_coord_info "chr8,101543269,101543436,+" ; protein_id "ENSP00000379260.1" ; tag basic CCDS ; transcript_id "GRHL2--AP001207.3^ENST00000395927.1" ; transcript_name "GRHL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
GSN--SMIM22 HAVANA gene 30444 35082 . + . FI_gene_label "GSN^ENSG00000148180.21" ; ID "GSN--SMIM22^GSN^ENSG00000148180.21" ; exon_id "ENSE00001461614.1" ; exon_number 1 ; gene_id "GSN--SMIM22^GSN^ENSG00000148180.21" ; gene_name GSN ; gene_type protein_coding ; havana_gene "OTTHUMG00000020584.8" ; havana_transcript "OTTHUMT00000053870.2" ; hgnc_id "HGNC:4620" ; level 2 ; orig_coord_info "chr9,121326582,121326781,+" ; protein_id "ENSP00000362912.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "GSN--SMIM22^ENST00000373806.1" ; transcript_name "GSN-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
GSN--SMIM22 HAVANA mRNA 30444 35082 . + . FI_gene_label "GSN^ENSG00000148180.21" ; ID "GSN--SMIM22^ENST00000373806.1" ; Parent "GSN--SMIM22^GSN^ENSG00000148180.21" ; exon_id "ENSE00001461614.1" ; exon_number 1 ; gene_id "GSN--SMIM22^GSN^ENSG00000148180.21" ; gene_name GSN ; gene_type protein_coding ; havana_gene "OTTHUMG00000020584.8" ; havana_transcript "OTTHUMT00000053870.2" ; hgnc_id "HGNC:4620" ; level 2 ; orig_coord_info "chr9,121326582,121326781,+" ; protein_id "ENSP00000362912.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "GSN--SMIM22^ENST00000373806.1" ; transcript_name "GSN-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
GSN--SMIM22 HAVANA gene 41174 42296 . + . FI_gene_label "SMIM22^ENSG00000267795.6" ; ID "GSN--SMIM22^SMIM22^ENSG00000267795.6" ; ccdsid "CCDS59259.1" ; exon_id "ENSE00002761834.1" ; exon_number 2 ; gene_id "GSN--SMIM22^SMIM22^ENSG00000267795.6" ; gene_name SMIM22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177849.3" ; havana_transcript "OTTHUMT00000439464.2" ; hgnc_id "HGNC:48329" ; level 2 ; orig_coord_info "chr16,4795735,4795858,+" ; protein_id "ENSP00000464748.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "GSN--SMIM22^ENST00000586005.6" ; transcript_name "SMIM22-201" ; transcript_support_level 3 ; transcript_type protein_coding
GSN--SMIM22 HAVANA mRNA 41174 42296 . + . FI_gene_label "SMIM22^ENSG00000267795.6" ; ID "GSN--SMIM22^ENST00000586005.6" ; Parent "GSN--SMIM22^SMIM22^ENSG00000267795.6" ; ccdsid "CCDS59259.1" ; exon_id "ENSE00002761834.1" ; exon_number 2 ; gene_id "GSN--SMIM22^SMIM22^ENSG00000267795.6" ; gene_name SMIM22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177849.3" ; havana_transcript "OTTHUMT00000439464.2" ; hgnc_id "HGNC:48329" ; level 2 ; orig_coord_info "chr16,4795735,4795858,+" ; protein_id "ENSP00000464748.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "GSN--SMIM22^ENST00000586005.6" ; transcript_name "SMIM22-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
GUSBP13--NAIP ENSEMBL gene 10656 31835 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "GUSBP13--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "GUSBP13--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "GUSBP13--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
GUSBP13--NAIP ENSEMBL mRNA 10656 31835 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "GUSBP13--NAIP^ENST00000194097.8" ; Parent "GUSBP13--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "GUSBP13--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "GUSBP13--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HGSNAT--AC118650.1 HAVANA gene 1001 25946 . + . FI_gene_label "HGSNAT^ENSG00000165102.15" ; ID "HGSNAT--AC118650.1^HGSNAT^ENSG00000165102.15" ; ccdsid "CCDS47852.1" ; exon_id "ENSE00002139984.2" ; exon_number 1 ; gene_id "HGSNAT--AC118650.1^HGSNAT^ENSG00000165102.15" ; gene_name HGSNAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000164102.3" ; havana_transcript "OTTHUMT00000377293.2" ; hgnc_id "HGNC:26527" ; level 2 ; orig_coord_info "chr8,43140497,43140614,+" ; protein_id "ENSP00000368965.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HGSNAT--AC118650.1^ENST00000379644.9" ; transcript_name "HGSNAT-201" ; transcript_support_level 2 ; transcript_type protein_coding
HGSNAT--AC118650.1 HAVANA mRNA 1001 25946 . + . FI_gene_label "HGSNAT^ENSG00000165102.15" ; ID "HGSNAT--AC118650.1^ENST00000379644.9" ; Parent "HGSNAT--AC118650.1^HGSNAT^ENSG00000165102.15" ; ccdsid "CCDS47852.1" ; exon_id "ENSE00002139984.2" ; exon_number 1 ; gene_id "HGSNAT--AC118650.1^HGSNAT^ENSG00000165102.15" ; gene_name HGSNAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000164102.3" ; havana_transcript "OTTHUMT00000377293.2" ; hgnc_id "HGNC:26527" ; level 2 ; orig_coord_info "chr8,43140497,43140614,+" ; protein_id "ENSP00000368965.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HGSNAT--AC118650.1^ENST00000379644.9" ; transcript_name "HGSNAT-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
HGSNAT--AC139365.1 HAVANA gene 1001 25946 . + . FI_gene_label "HGSNAT^ENSG00000165102.15" ; ID "HGSNAT--AC139365.1^HGSNAT^ENSG00000165102.15" ; ccdsid "CCDS47852.1" ; exon_id "ENSE00002139984.2" ; exon_number 1 ; gene_id "HGSNAT--AC139365.1^HGSNAT^ENSG00000165102.15" ; gene_name HGSNAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000164102.3" ; havana_transcript "OTTHUMT00000377293.2" ; hgnc_id "HGNC:26527" ; level 2 ; orig_coord_info "chr8,43140497,43140614,+" ; protein_id "ENSP00000368965.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HGSNAT--AC139365.1^ENST00000379644.9" ; transcript_name "HGSNAT-201" ; transcript_support_level 2 ; transcript_type protein_coding
HGSNAT--AC139365.1 HAVANA mRNA 1001 25946 . + . FI_gene_label "HGSNAT^ENSG00000165102.15" ; ID "HGSNAT--AC139365.1^ENST00000379644.9" ; Parent "HGSNAT--AC139365.1^HGSNAT^ENSG00000165102.15" ; ccdsid "CCDS47852.1" ; exon_id "ENSE00002139984.2" ; exon_number 1 ; gene_id "HGSNAT--AC139365.1^HGSNAT^ENSG00000165102.15" ; gene_name HGSNAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000164102.3" ; havana_transcript "OTTHUMT00000377293.2" ; hgnc_id "HGNC:26527" ; level 2 ; orig_coord_info "chr8,43140497,43140614,+" ; protein_id "ENSP00000368965.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HGSNAT--AC139365.1^ENST00000379644.9" ; transcript_name "HGSNAT-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
HIPK1--DENND2C HAVANA gene 7649 27776 . + . FI_gene_label "HIPK1^ENSG00000163349.22" ; ID "HIPK1--DENND2C^HIPK1^ENSG00000163349.22" ; ccdsid "CCDS41370.1" ; exon_id "ENSE00003509204.1" ; exon_number 2 ; gene_id "HIPK1--DENND2C^HIPK1^ENSG00000163349.22" ; gene_name HIPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011983.8" ; havana_transcript "OTTHUMT00000033133.2" ; hgnc_id "HGNC:19006" ; level 1 ; orig_coord_info "chr1,113952812,113952889,+" ; protein_id "ENSP00000340956.4" ; tag basic exp_conf CCDS ; transcript_id "HIPK1--DENND2C^ENST00000340480.8" ; transcript_name "HIPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIPK1--DENND2C HAVANA mRNA 7649 27776 . + . FI_gene_label "HIPK1^ENSG00000163349.22" ; ID "HIPK1--DENND2C^ENST00000340480.8" ; Parent "HIPK1--DENND2C^HIPK1^ENSG00000163349.22" ; ccdsid "CCDS41370.1" ; exon_id "ENSE00003509204.1" ; exon_number 2 ; gene_id "HIPK1--DENND2C^HIPK1^ENSG00000163349.22" ; gene_name HIPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011983.8" ; havana_transcript "OTTHUMT00000033133.2" ; hgnc_id "HGNC:19006" ; level 1 ; orig_coord_info "chr1,113952812,113952889,+" ; protein_id "ENSP00000340956.4" ; tag basic exp_conf CCDS ; transcript_id "HIPK1--DENND2C^ENST00000340480.8" ; transcript_name "HIPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIPK1--DENND2C HAVANA gene 31215 55780 . + . FI_gene_label "DENND2C^ENSG00000175984.15" ; ID "HIPK1--DENND2C^DENND2C^ENSG00000175984.15" ; ccdsid "CCDS58018.1" ; exon_id "ENSE00001450295.1" ; exon_number 4 ; gene_id "HIPK1--DENND2C^DENND2C^ENSG00000175984.15" ; gene_name DENND2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000011893.3" ; havana_transcript "OTTHUMT00000314822.2" ; hgnc_id "HGNC:24748" ; level 2 ; orig_coord_info "chr1,114625179,114625984,-" ; protein_id "ENSP00000376955.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HIPK1--DENND2C^ENST00000393274.6" ; transcript_name "DENND2C-201" ; transcript_support_level 5 ; transcript_type protein_coding
HIPK1--DENND2C HAVANA mRNA 31215 55780 . + . FI_gene_label "DENND2C^ENSG00000175984.15" ; ID "HIPK1--DENND2C^ENST00000393274.6" ; Parent "HIPK1--DENND2C^DENND2C^ENSG00000175984.15" ; ccdsid "CCDS58018.1" ; exon_id "ENSE00001450295.1" ; exon_number 4 ; gene_id "HIPK1--DENND2C^DENND2C^ENSG00000175984.15" ; gene_name DENND2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000011893.3" ; havana_transcript "OTTHUMT00000314822.2" ; hgnc_id "HGNC:24748" ; level 2 ; orig_coord_info "chr1,114625179,114625984,-" ; protein_id "ENSP00000376955.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HIPK1--DENND2C^ENST00000393274.6" ; transcript_name "DENND2C-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
HOOK3--AC024153.1 HAVANA gene 1033 38654 . + . FI_gene_label "HOOK3^ENSG00000168172.9" ; ID "HOOK3--AC024153.1^HOOK3^ENSG00000168172.9" ; ccdsid "CCDS6139.1" ; exon_id "ENSE00001238789.5" ; exon_number 1 ; gene_id "HOOK3--AC024153.1^HOOK3^ENSG00000168172.9" ; gene_name HOOK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165278.5" ; havana_transcript "OTTHUMT00000383172.3" ; hgnc_id "HGNC:23576" ; level 2 ; orig_coord_info "chr8,42897132,42897188,+" ; protein_id "ENSP00000305699.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOOK3--AC024153.1^ENST00000307602.9" ; transcript_name "HOOK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
HOOK3--AC024153.1 HAVANA mRNA 1033 38654 . + . FI_gene_label "HOOK3^ENSG00000168172.9" ; ID "HOOK3--AC024153.1^ENST00000307602.9" ; Parent "HOOK3--AC024153.1^HOOK3^ENSG00000168172.9" ; ccdsid "CCDS6139.1" ; exon_id "ENSE00001238789.5" ; exon_number 1 ; gene_id "HOOK3--AC024153.1^HOOK3^ENSG00000168172.9" ; gene_name HOOK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165278.5" ; havana_transcript "OTTHUMT00000383172.3" ; hgnc_id "HGNC:23576" ; level 2 ; orig_coord_info "chr8,42897132,42897188,+" ; protein_id "ENSP00000305699.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOOK3--AC024153.1^ENST00000307602.9" ; transcript_name "HOOK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HOOK3--RNU6-472P HAVANA gene 1033 38654 . + . FI_gene_label "HOOK3^ENSG00000168172.9" ; ID "HOOK3--RNU6-472P^HOOK3^ENSG00000168172.9" ; ccdsid "CCDS6139.1" ; exon_id "ENSE00001238789.5" ; exon_number 1 ; gene_id "HOOK3--RNU6-472P^HOOK3^ENSG00000168172.9" ; gene_name HOOK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165278.5" ; havana_transcript "OTTHUMT00000383172.3" ; hgnc_id "HGNC:23576" ; level 2 ; orig_coord_info "chr8,42897132,42897188,+" ; protein_id "ENSP00000305699.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOOK3--RNU6-472P^ENST00000307602.9" ; transcript_name "HOOK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
HOOK3--RNU6-472P HAVANA mRNA 1033 38654 . + . FI_gene_label "HOOK3^ENSG00000168172.9" ; ID "HOOK3--RNU6-472P^ENST00000307602.9" ; Parent "HOOK3--RNU6-472P^HOOK3^ENSG00000168172.9" ; ccdsid "CCDS6139.1" ; exon_id "ENSE00001238789.5" ; exon_number 1 ; gene_id "HOOK3--RNU6-472P^HOOK3^ENSG00000168172.9" ; gene_name HOOK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165278.5" ; havana_transcript "OTTHUMT00000383172.3" ; hgnc_id "HGNC:23576" ; level 2 ; orig_coord_info "chr8,42897132,42897188,+" ; protein_id "ENSP00000305699.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOOK3--RNU6-472P^ENST00000307602.9" ; transcript_name "HOOK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITGB6--RBMS1 HAVANA gene 1042 19338 . + . FI_gene_label "ITGB6^ENSG00000115221.12" ; ID "ITGB6--RBMS1^ITGB6^ENSG00000115221.12" ; ccdsid "CCDS2212.1" ; exon_id "ENSE00001900255.2" ; exon_number 1 ; gene_id "ITGB6--RBMS1^ITGB6^ENSG00000115221.12" ; gene_name ITGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132026.8" ; havana_transcript "OTTHUMT00000255036.2" ; hgnc_id "HGNC:6161" ; level 2 ; orig_coord_info "chr2,160200003,160200063,-" ; protein_id "ENSP00000283249.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB6--RBMS1^ENST00000283249.7" ; transcript_name "ITGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITGB6--RBMS1 HAVANA mRNA 1042 19338 . + . FI_gene_label "ITGB6^ENSG00000115221.12" ; ID "ITGB6--RBMS1^ENST00000283249.7" ; Parent "ITGB6--RBMS1^ITGB6^ENSG00000115221.12" ; ccdsid "CCDS2212.1" ; exon_id "ENSE00001900255.2" ; exon_number 1 ; gene_id "ITGB6--RBMS1^ITGB6^ENSG00000115221.12" ; gene_name ITGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132026.8" ; havana_transcript "OTTHUMT00000255036.2" ; hgnc_id "HGNC:6161" ; level 2 ; orig_coord_info "chr2,160200003,160200063,-" ; protein_id "ENSP00000283249.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB6--RBMS1^ENST00000283249.7" ; transcript_name "ITGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITGB6--RBMS1 HAVANA gene 22343 49987 . + . FI_gene_label "RBMS1^ENSG00000153250.20" ; ID "ITGB6--RBMS1^RBMS1^ENSG00000153250.20" ; ccdsid "CCDS2213.1" ; exon_id "ENSE00002037352.2" ; exon_number 1 ; gene_id "ITGB6--RBMS1^RBMS1^ENSG00000153250.20" ; gene_name RBMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132031.10" ; havana_transcript "OTTHUMT00000255043.5" ; hgnc_id "HGNC:9907" ; level 2 ; orig_coord_info "chr2,160493289,160493363,-" ; protein_id "ENSP00000294904.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB6--RBMS1^ENST00000348849.8" ; transcript_name "RBMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITGB6--RBMS1 HAVANA mRNA 22343 49987 . + . FI_gene_label "RBMS1^ENSG00000153250.20" ; ID "ITGB6--RBMS1^ENST00000348849.8" ; Parent "ITGB6--RBMS1^RBMS1^ENSG00000153250.20" ; ccdsid "CCDS2213.1" ; exon_id "ENSE00002037352.2" ; exon_number 1 ; gene_id "ITGB6--RBMS1^RBMS1^ENSG00000153250.20" ; gene_name RBMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132031.10" ; havana_transcript "OTTHUMT00000255043.5" ; hgnc_id "HGNC:9907" ; level 2 ; orig_coord_info "chr2,160493289,160493363,-" ; protein_id "ENSP00000294904.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB6--RBMS1^ENST00000348849.8" ; transcript_name "RBMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KANK1--LINC01242 HAVANA gene 22393 29603 . + . FI_gene_label "KANK1^ENSG00000107104.20" ; ID "KANK1--LINC01242^KANK1^ENSG00000107104.20" ; exon_id "ENSE00001633361.1" ; exon_number 1 ; gene_id "KANK1--LINC01242^KANK1^ENSG00000107104.20" ; gene_name KANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019434.7" ; havana_transcript "OTTHUMT00000051487.3" ; hgnc_id "HGNC:19309" ; level 2 ; orig_coord_info "chr9,734748,734835,+" ; protein_id "ENSP00000371723.3" ; tag mRNA_start_NF cds_start_NF retained_intron_final ; transcript_id "KANK1--LINC01242^ENST00000382286.2" ; transcript_name "KANK1-202" ; transcript_support_level 2 ; transcript_type protein_coding
KANK1--LINC01242 HAVANA mRNA 22393 29603 . + . FI_gene_label "KANK1^ENSG00000107104.20" ; ID "KANK1--LINC01242^ENST00000382286.2" ; Parent "KANK1--LINC01242^KANK1^ENSG00000107104.20" ; exon_id "ENSE00001633361.1" ; exon_number 1 ; gene_id "KANK1--LINC01242^KANK1^ENSG00000107104.20" ; gene_name KANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019434.7" ; havana_transcript "OTTHUMT00000051487.3" ; hgnc_id "HGNC:19309" ; level 2 ; orig_coord_info "chr9,734748,734835,+" ; protein_id "ENSP00000371723.3" ; tag mRNA_start_NF cds_start_NF retained_intron_final ; transcript_id "KANK1--LINC01242^ENST00000382286.2" ; transcript_name "KANK1-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KANK1--ME2P1 HAVANA gene 22393 29603 . + . FI_gene_label "KANK1^ENSG00000107104.20" ; ID "KANK1--ME2P1^KANK1^ENSG00000107104.20" ; exon_id "ENSE00001633361.1" ; exon_number 1 ; gene_id "KANK1--ME2P1^KANK1^ENSG00000107104.20" ; gene_name KANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019434.7" ; havana_transcript "OTTHUMT00000051487.3" ; hgnc_id "HGNC:19309" ; level 2 ; orig_coord_info "chr9,734748,734835,+" ; protein_id "ENSP00000371723.3" ; tag mRNA_start_NF cds_start_NF retained_intron_final ; transcript_id "KANK1--ME2P1^ENST00000382286.2" ; transcript_name "KANK1-202" ; transcript_support_level 2 ; transcript_type protein_coding
KANK1--ME2P1 HAVANA mRNA 22393 29603 . + . FI_gene_label "KANK1^ENSG00000107104.20" ; ID "KANK1--ME2P1^ENST00000382286.2" ; Parent "KANK1--ME2P1^KANK1^ENSG00000107104.20" ; exon_id "ENSE00001633361.1" ; exon_number 1 ; gene_id "KANK1--ME2P1^KANK1^ENSG00000107104.20" ; gene_name KANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019434.7" ; havana_transcript "OTTHUMT00000051487.3" ; hgnc_id "HGNC:19309" ; level 2 ; orig_coord_info "chr9,734748,734835,+" ; protein_id "ENSP00000371723.3" ; tag mRNA_start_NF cds_start_NF retained_intron_final ; transcript_id "KANK1--ME2P1^ENST00000382286.2" ; transcript_name "KANK1-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KCND3--PPM1E HAVANA gene 1001 15498 . + . FI_gene_label "KCND3^ENSG00000171385.10" ; ID "KCND3--PPM1E^KCND3^ENSG00000171385.10" ; ccdsid "CCDS843.1" ; exon_id "ENSE00001381593.1" ; exon_number 2 ; gene_id "KCND3--PPM1E^KCND3^ENSG00000171385.10" ; gene_name KCND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011989.1" ; hgnc_id "HGNC:6239" ; level 2 ; orig_coord_info "chr1,111981621,111982726,-" ; protein_id "ENSP00000306923.4" ; tag alternative_5_UTR basic MANE_Select appris_alternative_1 CCDS ; transcript_id "KCND3--PPM1E^ENST00000302127.5" ; transcript_name "KCND3-201" ; transcript_support_level 5 ; transcript_type protein_coding
KCND3--PPM1E HAVANA mRNA 1001 15498 . + . FI_gene_label "KCND3^ENSG00000171385.10" ; ID "KCND3--PPM1E^ENST00000302127.5" ; Parent "KCND3--PPM1E^KCND3^ENSG00000171385.10" ; ccdsid "CCDS843.1" ; exon_id "ENSE00001381593.1" ; exon_number 2 ; gene_id "KCND3--PPM1E^KCND3^ENSG00000171385.10" ; gene_name KCND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011989.1" ; hgnc_id "HGNC:6239" ; level 2 ; orig_coord_info "chr1,111981621,111982726,-" ; protein_id "ENSP00000306923.4" ; tag alternative_5_UTR basic MANE_Select appris_alternative_1 CCDS ; transcript_id "KCND3--PPM1E^ENST00000302127.5" ; transcript_name "KCND3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
KCND3--PPM1E HAVANA gene 18499 30614 . + . FI_gene_label "PPM1E^ENSG00000175175.6" ; ID "KCND3--PPM1E^PPM1E^ENSG00000175175.6" ; ccdsid "CCDS11613.1" ; exon_id "ENSE00001255303.3" ; exon_number 1 ; gene_id "KCND3--PPM1E^PPM1E^ENSG00000175175.6" ; gene_name PPM1E ; gene_type protein_coding ; havana_gene "OTTHUMG00000179248.3" ; havana_transcript "OTTHUMT00000445458.3" ; hgnc_id "HGNC:19322" ; level 2 ; orig_coord_info "chr17,58755998,58756461,+" ; protein_id "ENSP00000312411.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KCND3--PPM1E^ENST00000308249.4" ; transcript_name "PPM1E-201" ; transcript_support_level 1 ; transcript_type protein_coding
KCND3--PPM1E HAVANA mRNA 18499 30614 . + . FI_gene_label "PPM1E^ENSG00000175175.6" ; ID "KCND3--PPM1E^ENST00000308249.4" ; Parent "KCND3--PPM1E^PPM1E^ENSG00000175175.6" ; ccdsid "CCDS11613.1" ; exon_id "ENSE00001255303.3" ; exon_number 1 ; gene_id "KCND3--PPM1E^PPM1E^ENSG00000175175.6" ; gene_name PPM1E ; gene_type protein_coding ; havana_gene "OTTHUMG00000179248.3" ; havana_transcript "OTTHUMT00000445458.3" ; hgnc_id "HGNC:19322" ; level 2 ; orig_coord_info "chr17,58755998,58756461,+" ; protein_id "ENSP00000312411.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KCND3--PPM1E^ENST00000308249.4" ; transcript_name "PPM1E-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KMT2C--TPTE HAVANA gene 1639 75258 . + . FI_gene_label "KMT2C^ENSG00000055609.20" ; ID "KMT2C--TPTE^KMT2C^ENSG00000055609.20" ; ccdsid "CCDS5931.1" ; exon_id "ENSE00003850683.1" ; exon_number 1 ; gene_id "KMT2C--TPTE^KMT2C^ENSG00000055609.20" ; gene_name KMT2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000150553.7" ; havana_transcript "OTTHUMT00000318887.4" ; hgnc_id "HGNC:13726" ; level 2 ; orig_coord_info "chr7,152435626,152435786,-" ; protein_id "ENSP00000262189.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KMT2C--TPTE^ENST00000262189.11" ; transcript_name "KMT2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
KMT2C--TPTE HAVANA mRNA 1639 75258 . + . FI_gene_label "KMT2C^ENSG00000055609.20" ; ID "KMT2C--TPTE^ENST00000262189.11" ; Parent "KMT2C--TPTE^KMT2C^ENSG00000055609.20" ; ccdsid "CCDS5931.1" ; exon_id "ENSE00003850683.1" ; exon_number 1 ; gene_id "KMT2C--TPTE^KMT2C^ENSG00000055609.20" ; gene_name KMT2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000150553.7" ; havana_transcript "OTTHUMT00000318887.4" ; hgnc_id "HGNC:13726" ; level 2 ; orig_coord_info "chr7,152435626,152435786,-" ; protein_id "ENSP00000262189.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KMT2C--TPTE^ENST00000262189.11" ; transcript_name "KMT2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KMT2C--TPTE HAVANA gene 78284 101111 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "KMT2C--TPTE^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "KMT2C--TPTE^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "KMT2C--TPTE^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
KMT2C--TPTE HAVANA mRNA 78284 101111 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "KMT2C--TPTE^ENST00000427445.6" ; Parent "KMT2C--TPTE^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "KMT2C--TPTE^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "KMT2C--TPTE^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LEMD3--AC002375.1 HAVANA gene 1001 14319 . + . FI_gene_label "LEMD3^ENSG00000174106.3" ; ID "LEMD3--AC002375.1^LEMD3^ENSG00000174106.3" ; ccdsid "CCDS8972.1" ; exon_id "ENSE00001208170.3" ; exon_number 1 ; gene_id "LEMD3--AC002375.1^LEMD3^ENSG00000174106.3" ; gene_name LEMD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168840.3" ; havana_transcript "OTTHUMT00000401312.3" ; hgnc_id "HGNC:28887" ; level 2 ; orig_coord_info "chr12,65169597,65171118,+" ; protein_id "ENSP00000308369.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LEMD3--AC002375.1^ENST00000308330.3" ; transcript_name "LEMD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
LEMD3--AC002375.1 HAVANA mRNA 1001 14319 . + . FI_gene_label "LEMD3^ENSG00000174106.3" ; ID "LEMD3--AC002375.1^ENST00000308330.3" ; Parent "LEMD3--AC002375.1^LEMD3^ENSG00000174106.3" ; ccdsid "CCDS8972.1" ; exon_id "ENSE00001208170.3" ; exon_number 1 ; gene_id "LEMD3--AC002375.1^LEMD3^ENSG00000174106.3" ; gene_name LEMD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168840.3" ; havana_transcript "OTTHUMT00000401312.3" ; hgnc_id "HGNC:28887" ; level 2 ; orig_coord_info "chr12,65169597,65171118,+" ; protein_id "ENSP00000308369.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LEMD3--AC002375.1^ENST00000308330.3" ; transcript_name "LEMD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAN1A2--CBLN4 HAVANA gene 26668 31821 . + . FI_gene_label "CBLN4^ENSG00000054803.4" ; ID "MAN1A2--CBLN4^CBLN4^ENSG00000054803.4" ; ccdsid "CCDS13448.1" ; exon_id "ENSE00000512423.5" ; exon_number 1 ; gene_id "MAN1A2--CBLN4^CBLN4^ENSG00000054803.4" ; gene_name CBLN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032782.3" ; havana_transcript "OTTHUMT00000079783.3" ; hgnc_id "HGNC:16231" ; level 2 ; orig_coord_info "chr20,56003881,56004171,-" ; protein_id "ENSP00000064571.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--CBLN4^ENST00000064571.3" ; transcript_name "CBLN4-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAN1A2--CBLN4 HAVANA mRNA 26668 31821 . + . FI_gene_label "CBLN4^ENSG00000054803.4" ; ID "MAN1A2--CBLN4^ENST00000064571.3" ; Parent "MAN1A2--CBLN4^CBLN4^ENSG00000054803.4" ; ccdsid "CCDS13448.1" ; exon_id "ENSE00000512423.5" ; exon_number 1 ; gene_id "MAN1A2--CBLN4^CBLN4^ENSG00000054803.4" ; gene_name CBLN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032782.3" ; havana_transcript "OTTHUMT00000079783.3" ; hgnc_id "HGNC:16231" ; level 2 ; orig_coord_info "chr20,56003881,56004171,-" ; protein_id "ENSP00000064571.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--CBLN4^ENST00000064571.3" ; transcript_name "CBLN4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAN1A2--CBLN4 HAVANA gene 1001 23667 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "MAN1A2--CBLN4^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "MAN1A2--CBLN4^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--CBLN4^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAN1A2--CBLN4 HAVANA mRNA 1001 23667 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "MAN1A2--CBLN4^ENST00000356554.7" ; Parent "MAN1A2--CBLN4^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "MAN1A2--CBLN4^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--CBLN4^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP3K2--IWS1 HAVANA gene 29850 47935 . + . FI_gene_label "IWS1^ENSG00000163166.15" ; ID "MAP3K2--IWS1^IWS1^ENSG00000163166.15" ; ccdsid "CCDS2146.1" ; exon_id "ENSE00001904167.2" ; exon_number 1 ; gene_id "MAP3K2--IWS1^IWS1^ENSG00000163166.15" ; gene_name IWS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131527.11" ; havana_transcript "OTTHUMT00000254384.3" ; hgnc_id "HGNC:25467" ; level 2 ; orig_coord_info "chr2,127526175,127526208,-" ; protein_id "ENSP00000295321.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP3K2--IWS1^ENST00000295321.9" ; transcript_name "IWS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP3K2--IWS1 HAVANA mRNA 29850 47935 . + . FI_gene_label "IWS1^ENSG00000163166.15" ; ID "MAP3K2--IWS1^ENST00000295321.9" ; Parent "MAP3K2--IWS1^IWS1^ENSG00000163166.15" ; ccdsid "CCDS2146.1" ; exon_id "ENSE00001904167.2" ; exon_number 1 ; gene_id "MAP3K2--IWS1^IWS1^ENSG00000163166.15" ; gene_name IWS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131527.11" ; havana_transcript "OTTHUMT00000254384.3" ; hgnc_id "HGNC:25467" ; level 2 ; orig_coord_info "chr2,127526175,127526208,-" ; protein_id "ENSP00000295321.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP3K2--IWS1^ENST00000295321.9" ; transcript_name "IWS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP3K2--IWS1 HAVANA gene 3015 17778 . + . FI_gene_label "MAP3K2^ENSG00000169967.16" ; ID "MAP3K2--IWS1^MAP3K2^ENSG00000169967.16" ; ccdsid "CCDS46404.1" ; exon_id "ENSE00001853094.1" ; exon_number 1 ; gene_id "MAP3K2--IWS1^MAP3K2^ENSG00000169967.16" ; gene_name MAP3K2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153397.2" ; havana_transcript "OTTHUMT00000331015.1" ; hgnc_id "HGNC:6854" ; level 2 ; orig_coord_info "chr2,127343126,127343129,-" ; protein_id "ENSP00000343463.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "MAP3K2--IWS1^ENST00000344908.9" ; transcript_name "MAP3K2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP3K2--IWS1 HAVANA mRNA 3015 17778 . + . FI_gene_label "MAP3K2^ENSG00000169967.16" ; ID "MAP3K2--IWS1^ENST00000344908.9" ; Parent "MAP3K2--IWS1^MAP3K2^ENSG00000169967.16" ; ccdsid "CCDS46404.1" ; exon_id "ENSE00001853094.1" ; exon_number 1 ; gene_id "MAP3K2--IWS1^MAP3K2^ENSG00000169967.16" ; gene_name MAP3K2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153397.2" ; havana_transcript "OTTHUMT00000331015.1" ; hgnc_id "HGNC:6854" ; level 2 ; orig_coord_info "chr2,127343126,127343129,-" ; protein_id "ENSP00000343463.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "MAP3K2--IWS1^ENST00000344908.9" ; transcript_name "MAP3K2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--FGF12 HAVANA gene 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--FGF12^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MB21D2--FGF12 HAVANA mRNA 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--FGF12^ENST00000392452.3" ; Parent "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--FGF12^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--FGF12 HAVANA gene 9187 17567 . + . FI_gene_label "FGF12^ENSG00000114279.14" ; ID "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; exon_id "ENSE00001698574.1" ; exon_number 1 ; gene_id "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; gene_name FGF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156132.5" ; havana_transcript "OTTHUMT00000343163.2" ; hgnc_id "HGNC:3668" ; level 2 ; orig_coord_info "chr3,192727181,192727193,-" ; protein_id "ENSP00000395517.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "MB21D2--FGF12^ENST00000418610.1" ; transcript_name "FGF12-201" ; transcript_support_level 4 ; transcript_type protein_coding
MB21D2--FGF12 HAVANA mRNA 9187 17567 . + . FI_gene_label "FGF12^ENSG00000114279.14" ; ID "MB21D2--FGF12^ENST00000418610.1" ; Parent "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; exon_id "ENSE00001698574.1" ; exon_number 1 ; gene_id "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; gene_name FGF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156132.5" ; havana_transcript "OTTHUMT00000343163.2" ; hgnc_id "HGNC:3668" ; level 2 ; orig_coord_info "chr3,192727181,192727193,-" ; protein_id "ENSP00000395517.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "MB21D2--FGF12^ENST00000418610.1" ; transcript_name "FGF12-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
MIR4713HG--GLDN HAVANA mRNA 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^ENST00000335449.11" ; Parent "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MTAP--CDKN2B-AS1 HAVANA gene 1022 14638 . + . FI_gene_label "MTAP^ENSG00000099810.21" ; ID "MTAP--CDKN2B-AS1^MTAP^ENSG00000099810.21" ; exon_id "ENSE00001547793.2" ; exon_number 1 ; gene_id "MTAP--CDKN2B-AS1^MTAP^ENSG00000099810.21" ; gene_name MTAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000019690.10" ; havana_transcript "OTTHUMT00000334287.1" ; hgnc_id "HGNC:7413" ; level 2 ; orig_coord_info "chr9,21802749,21802781,+" ; protein_id "ENSP00000393507.1" ; tag not_organism_supported ; transcript_id "MTAP--CDKN2B-AS1^ENST00000419385.5" ; transcript_name "MTAP-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
MTAP--CDKN2B-AS1 HAVANA mRNA 1022 14638 . + . FI_gene_label "MTAP^ENSG00000099810.21" ; ID "MTAP--CDKN2B-AS1^ENST00000419385.5" ; Parent "MTAP--CDKN2B-AS1^MTAP^ENSG00000099810.21" ; exon_id "ENSE00001547793.2" ; exon_number 1 ; gene_id "MTAP--CDKN2B-AS1^MTAP^ENSG00000099810.21" ; gene_name MTAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000019690.10" ; havana_transcript "OTTHUMT00000334287.1" ; hgnc_id "HGNC:7413" ; level 2 ; orig_coord_info "chr9,21802749,21802781,+" ; protein_id "ENSP00000393507.1" ; tag not_organism_supported ; transcript_id "MTAP--CDKN2B-AS1^ENST00000419385.5" ; transcript_name "MTAP-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MYO6--SENP6 HAVANA gene 53042 72994 . + . FI_gene_label "SENP6^ENSG00000112701.18" ; ID "MYO6--SENP6^SENP6^ENSG00000112701.18" ; ccdsid "CCDS78158.1" ; exon_id "ENSE00001451492.2" ; exon_number 1 ; gene_id "MYO6--SENP6^SENP6^ENSG00000112701.18" ; gene_name SENP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015060.5" ; havana_transcript "OTTHUMT00000366019.1" ; hgnc_id "HGNC:20944" ; level 2 ; orig_coord_info "chr6,75602525,75602576,+" ; protein_id "ENSP00000321820.8" ; tag basic CCDS ; transcript_id "MYO6--SENP6^ENST00000327284.12" ; transcript_name "SENP6-201" ; transcript_support_level 2 ; transcript_type protein_coding
MYO6--SENP6 HAVANA mRNA 53042 72994 . + . FI_gene_label "SENP6^ENSG00000112701.18" ; ID "MYO6--SENP6^ENST00000327284.12" ; Parent "MYO6--SENP6^SENP6^ENSG00000112701.18" ; ccdsid "CCDS78158.1" ; exon_id "ENSE00001451492.2" ; exon_number 1 ; gene_id "MYO6--SENP6^SENP6^ENSG00000112701.18" ; gene_name SENP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015060.5" ; havana_transcript "OTTHUMT00000366019.1" ; hgnc_id "HGNC:20944" ; level 2 ; orig_coord_info "chr6,75602525,75602576,+" ; protein_id "ENSP00000321820.8" ; tag basic CCDS ; transcript_id "MYO6--SENP6^ENST00000327284.12" ; transcript_name "SENP6-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MYO6--SENP6 HAVANA gene 1044 46698 . + . FI_gene_label "MYO6^ENSG00000196586.16" ; ID "MYO6--SENP6^MYO6^ENSG00000196586.16" ; exon_id "ENSE00002155619.1" ; exon_number 2 ; gene_id "MYO6--SENP6^MYO6^ENSG00000196586.16" ; gene_name MYO6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015061.7" ; havana_transcript "OTTHUMT00000041280.1" ; hgnc_id "HGNC:7605" ; level 2 ; orig_coord_info "chr6,75817548,75817664,+" ; protein_id "ENSP00000358992.1" ; tag RNA_Seq_supported_partial basic appris_principal_4 ; transcript_id "MYO6--SENP6^ENST00000369975.6" ; transcript_name "MYO6-201" ; transcript_support_level 5 ; transcript_type protein_coding
MYO6--SENP6 HAVANA mRNA 1044 46698 . + . FI_gene_label "MYO6^ENSG00000196586.16" ; ID "MYO6--SENP6^ENST00000369975.6" ; Parent "MYO6--SENP6^MYO6^ENSG00000196586.16" ; exon_id "ENSE00002155619.1" ; exon_number 2 ; gene_id "MYO6--SENP6^MYO6^ENSG00000196586.16" ; gene_name MYO6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015061.7" ; havana_transcript "OTTHUMT00000041280.1" ; hgnc_id "HGNC:7605" ; level 2 ; orig_coord_info "chr6,75817548,75817664,+" ; protein_id "ENSP00000358992.1" ; tag RNA_Seq_supported_partial basic appris_principal_4 ; transcript_id "MYO6--SENP6^ENST00000369975.6" ; transcript_name "MYO6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MYO9B--FCHO1 ENSEMBL gene 44035 68956 . + . FI_gene_label "FCHO1^ENSG00000130475.14" ; ID "MYO9B--FCHO1^FCHO1^ENSG00000130475.14" ; ccdsid "CCDS32955.1" ; exon_id "ENSE00002270325.1" ; exon_number 2 ; gene_id "MYO9B--FCHO1^FCHO1^ENSG00000130475.14" ; gene_name FCHO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183293.6" ; hgnc_id "HGNC:29002" ; level 3 ; orig_coord_info "chr19,17755165,17755191,+" ; protein_id "ENSP00000252771.7" ; tag basic appris_principal_1 CCDS ; transcript_id "MYO9B--FCHO1^ENST00000252771.11" ; transcript_name "FCHO1-201" ; transcript_support_level 5 ; transcript_type protein_coding
MYO9B--FCHO1 ENSEMBL mRNA 44035 68956 . + . FI_gene_label "FCHO1^ENSG00000130475.14" ; ID "MYO9B--FCHO1^ENST00000252771.11" ; Parent "MYO9B--FCHO1^FCHO1^ENSG00000130475.14" ; ccdsid "CCDS32955.1" ; exon_id "ENSE00002270325.1" ; exon_number 2 ; gene_id "MYO9B--FCHO1^FCHO1^ENSG00000130475.14" ; gene_name FCHO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183293.6" ; hgnc_id "HGNC:29002" ; level 3 ; orig_coord_info "chr19,17755165,17755191,+" ; protein_id "ENSP00000252771.7" ; tag basic appris_principal_1 CCDS ; transcript_id "MYO9B--FCHO1^ENST00000252771.11" ; transcript_name "FCHO1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MYO9B--FCHO1 ENSEMBL gene 2095 39955 . + . FI_gene_label "MYO9B^ENSG00000099331.13" ; ID "MYO9B--FCHO1^MYO9B^ENSG00000099331.13" ; ccdsid "CCDS46010.1" ; exon_id "ENSE00002724693.1" ; exon_number 1 ; gene_id "MYO9B--FCHO1^MYO9B^ENSG00000099331.13" ; gene_name MYO9B ; gene_type protein_coding ; havana_gene "OTTHUMG00000182707.2" ; hgnc_id "HGNC:7609" ; level 3 ; orig_coord_info "chr19,17101718,17102557,+" ; protein_id "ENSP00000380444.2" ; tag basic appris_principal_2 CCDS ; transcript_id "MYO9B--FCHO1^ENST00000397274.6" ; transcript_name "MYO9B-201" ; transcript_support_level 5 ; transcript_type protein_coding
MYO9B--FCHO1 ENSEMBL mRNA 2095 39955 . + . FI_gene_label "MYO9B^ENSG00000099331.13" ; ID "MYO9B--FCHO1^ENST00000397274.6" ; Parent "MYO9B--FCHO1^MYO9B^ENSG00000099331.13" ; ccdsid "CCDS46010.1" ; exon_id "ENSE00002724693.1" ; exon_number 1 ; gene_id "MYO9B--FCHO1^MYO9B^ENSG00000099331.13" ; gene_name MYO9B ; gene_type protein_coding ; havana_gene "OTTHUMG00000182707.2" ; hgnc_id "HGNC:7609" ; level 3 ; orig_coord_info "chr19,17101718,17102557,+" ; protein_id "ENSP00000380444.2" ; tag basic appris_principal_2 CCDS ; transcript_id "MYO9B--FCHO1^ENST00000397274.6" ; transcript_name "MYO9B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NAV1--AL691482.2 HAVANA gene 9061 45289 . + . FI_gene_label "NAV1^ENSG00000134369.15" ; ID "NAV1--AL691482.2^NAV1^ENSG00000134369.15" ; ccdsid "CCDS53456.1" ; exon_id "ENSE00002688717.1" ; exon_number 1 ; gene_id "NAV1--AL691482.2^NAV1^ENSG00000134369.15" ; gene_name NAV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035766.7" ; havana_transcript "OTTHUMT00000087014.2" ; hgnc_id "HGNC:15989" ; level 2 ; orig_coord_info "chr1,201740024,201740076,+" ; protein_id "ENSP00000356264.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "NAV1--AL691482.2^ENST00000367295.5" ; transcript_name "NAV1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NAV1--AL691482.2 HAVANA mRNA 9061 45289 . + . FI_gene_label "NAV1^ENSG00000134369.15" ; ID "NAV1--AL691482.2^ENST00000367295.5" ; Parent "NAV1--AL691482.2^NAV1^ENSG00000134369.15" ; ccdsid "CCDS53456.1" ; exon_id "ENSE00002688717.1" ; exon_number 1 ; gene_id "NAV1--AL691482.2^NAV1^ENSG00000134369.15" ; gene_name NAV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035766.7" ; havana_transcript "OTTHUMT00000087014.2" ; hgnc_id "HGNC:15989" ; level 2 ; orig_coord_info "chr1,201740024,201740076,+" ; protein_id "ENSP00000356264.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "NAV1--AL691482.2^ENST00000367295.5" ; transcript_name "NAV1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NAV1--GPR37L1 HAVANA gene 48290 55818 . + . FI_gene_label "GPR37L1^ENSG00000170075.9" ; ID "NAV1--GPR37L1^GPR37L1^ENSG00000170075.9" ; ccdsid "CCDS1420.1" ; exon_id "ENSE00001444059.4" ; exon_number 1 ; gene_id "NAV1--GPR37L1^GPR37L1^ENSG00000170075.9" ; gene_name GPR37L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035924.3" ; havana_transcript "OTTHUMT00000087496.3" ; hgnc_id "HGNC:14923" ; level 2 ; orig_coord_info "chr1,202122964,202123593,+" ; protein_id "ENSP00000356251.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NAV1--GPR37L1^ENST00000367282.6" ; transcript_name "GPR37L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NAV1--GPR37L1 HAVANA mRNA 48290 55818 . + . FI_gene_label "GPR37L1^ENSG00000170075.9" ; ID "NAV1--GPR37L1^ENST00000367282.6" ; Parent "NAV1--GPR37L1^GPR37L1^ENSG00000170075.9" ; ccdsid "CCDS1420.1" ; exon_id "ENSE00001444059.4" ; exon_number 1 ; gene_id "NAV1--GPR37L1^GPR37L1^ENSG00000170075.9" ; gene_name GPR37L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035924.3" ; havana_transcript "OTTHUMT00000087496.3" ; hgnc_id "HGNC:14923" ; level 2 ; orig_coord_info "chr1,202122964,202123593,+" ; protein_id "ENSP00000356251.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NAV1--GPR37L1^ENST00000367282.6" ; transcript_name "GPR37L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NAV1--GPR37L1 HAVANA gene 9061 45289 . + . FI_gene_label "NAV1^ENSG00000134369.15" ; ID "NAV1--GPR37L1^NAV1^ENSG00000134369.15" ; ccdsid "CCDS53456.1" ; exon_id "ENSE00002688717.1" ; exon_number 1 ; gene_id "NAV1--GPR37L1^NAV1^ENSG00000134369.15" ; gene_name NAV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035766.7" ; havana_transcript "OTTHUMT00000087014.2" ; hgnc_id "HGNC:15989" ; level 2 ; orig_coord_info "chr1,201740024,201740076,+" ; protein_id "ENSP00000356264.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "NAV1--GPR37L1^ENST00000367295.5" ; transcript_name "NAV1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NAV1--GPR37L1 HAVANA mRNA 9061 45289 . + . FI_gene_label "NAV1^ENSG00000134369.15" ; ID "NAV1--GPR37L1^ENST00000367295.5" ; Parent "NAV1--GPR37L1^NAV1^ENSG00000134369.15" ; ccdsid "CCDS53456.1" ; exon_id "ENSE00002688717.1" ; exon_number 1 ; gene_id "NAV1--GPR37L1^NAV1^ENSG00000134369.15" ; gene_name NAV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035766.7" ; havana_transcript "OTTHUMT00000087014.2" ; hgnc_id "HGNC:15989" ; level 2 ; orig_coord_info "chr1,201740024,201740076,+" ; protein_id "ENSP00000356264.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "NAV1--GPR37L1^ENST00000367295.5" ; transcript_name "NAV1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCOA3--AL499605.1 HAVANA gene 1055 25366 . + . FI_gene_label "NCOA3^ENSG00000124151.19" ; ID "NCOA3--AL499605.1^NCOA3^ENSG00000124151.19" ; ccdsid "CCDS54472.1" ; exon_id "ENSE00000845234.2" ; exon_number 3 ; gene_id "NCOA3--AL499605.1^NCOA3^ENSG00000124151.19" ; gene_name NCOA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033061.4" ; havana_transcript "OTTHUMT00000080404.1" ; hgnc_id "HGNC:7670" ; level 2 ; orig_coord_info "chr20,47622248,47622330,+" ; protein_id "ENSP00000361065.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "NCOA3--AL499605.1^ENST00000371997.3" ; transcript_name "NCOA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCOA3--AL499605.1 HAVANA mRNA 1055 25366 . + . FI_gene_label "NCOA3^ENSG00000124151.19" ; ID "NCOA3--AL499605.1^ENST00000371997.3" ; Parent "NCOA3--AL499605.1^NCOA3^ENSG00000124151.19" ; ccdsid "CCDS54472.1" ; exon_id "ENSE00000845234.2" ; exon_number 3 ; gene_id "NCOA3--AL499605.1^NCOA3^ENSG00000124151.19" ; gene_name NCOA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033061.4" ; havana_transcript "OTTHUMT00000080404.1" ; hgnc_id "HGNC:7670" ; level 2 ; orig_coord_info "chr20,47622248,47622330,+" ; protein_id "ENSP00000361065.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "NCOA3--AL499605.1^ENST00000371997.3" ; transcript_name "NCOA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCOA3--AL596327.1 HAVANA gene 1055 25366 . + . FI_gene_label "NCOA3^ENSG00000124151.19" ; ID "NCOA3--AL596327.1^NCOA3^ENSG00000124151.19" ; ccdsid "CCDS54472.1" ; exon_id "ENSE00000845234.2" ; exon_number 3 ; gene_id "NCOA3--AL596327.1^NCOA3^ENSG00000124151.19" ; gene_name NCOA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033061.4" ; havana_transcript "OTTHUMT00000080404.1" ; hgnc_id "HGNC:7670" ; level 2 ; orig_coord_info "chr20,47622248,47622330,+" ; protein_id "ENSP00000361065.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "NCOA3--AL596327.1^ENST00000371997.3" ; transcript_name "NCOA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCOA3--AL596327.1 HAVANA mRNA 1055 25366 . + . FI_gene_label "NCOA3^ENSG00000124151.19" ; ID "NCOA3--AL596327.1^ENST00000371997.3" ; Parent "NCOA3--AL596327.1^NCOA3^ENSG00000124151.19" ; ccdsid "CCDS54472.1" ; exon_id "ENSE00000845234.2" ; exon_number 3 ; gene_id "NCOA3--AL596327.1^NCOA3^ENSG00000124151.19" ; gene_name NCOA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033061.4" ; havana_transcript "OTTHUMT00000080404.1" ; hgnc_id "HGNC:7670" ; level 2 ; orig_coord_info "chr20,47622248,47622330,+" ; protein_id "ENSP00000361065.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "NCOA3--AL596327.1^ENST00000371997.3" ; transcript_name "NCOA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NFATC2--AP000550.3 HAVANA gene 2273 19671 . + . FI_gene_label "NFATC2^ENSG00000101096.20" ; ID "NFATC2--AP000550.3^NFATC2^ENSG00000101096.20" ; ccdsid "CCDS33488.1" ; exon_id "ENSE00001455518.1" ; exon_number 1 ; gene_id "NFATC2--AP000550.3^NFATC2^ENSG00000101096.20" ; gene_name NFATC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032747.4" ; havana_transcript "OTTHUMT00000079729.3" ; hgnc_id "HGNC:7776" ; level 2 ; orig_coord_info "chr20,51542370,51542499,-" ; protein_id "ENSP00000360619.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "NFATC2--AP000550.3^ENST00000371564.8" ; transcript_name "NFATC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NFATC2--AP000550.3 HAVANA mRNA 2273 19671 . + . FI_gene_label "NFATC2^ENSG00000101096.20" ; ID "NFATC2--AP000550.3^ENST00000371564.8" ; Parent "NFATC2--AP000550.3^NFATC2^ENSG00000101096.20" ; ccdsid "CCDS33488.1" ; exon_id "ENSE00001455518.1" ; exon_number 1 ; gene_id "NFATC2--AP000550.3^NFATC2^ENSG00000101096.20" ; gene_name NFATC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032747.4" ; havana_transcript "OTTHUMT00000079729.3" ; hgnc_id "HGNC:7776" ; level 2 ; orig_coord_info "chr20,51542370,51542499,-" ; protein_id "ENSP00000360619.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "NFATC2--AP000550.3^ENST00000371564.8" ; transcript_name "NFATC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NFATC2--IGSF3 HAVANA gene 24002 38917 . + . FI_gene_label "IGSF3^ENSG00000143061.18" ; ID "NFATC2--IGSF3^IGSF3^ENSG00000143061.18" ; ccdsid "CCDS30814.1" ; exon_id "ENSE00000957890.1" ; exon_number 1 ; gene_id "NFATC2--IGSF3^IGSF3^ENSG00000143061.18" ; gene_name IGSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022751.4" ; havana_transcript "OTTHUMT00000059041.1" ; hgnc_id "HGNC:5950" ; level 2 ; orig_coord_info "chr1,116666284,116666326,-" ; protein_id "ENSP00000321184.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "NFATC2--IGSF3^ENST00000318837.6" ; transcript_name "IGSF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
NFATC2--IGSF3 HAVANA mRNA 24002 38917 . + . FI_gene_label "IGSF3^ENSG00000143061.18" ; ID "NFATC2--IGSF3^ENST00000318837.6" ; Parent "NFATC2--IGSF3^IGSF3^ENSG00000143061.18" ; ccdsid "CCDS30814.1" ; exon_id "ENSE00000957890.1" ; exon_number 1 ; gene_id "NFATC2--IGSF3^IGSF3^ENSG00000143061.18" ; gene_name IGSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022751.4" ; havana_transcript "OTTHUMT00000059041.1" ; hgnc_id "HGNC:5950" ; level 2 ; orig_coord_info "chr1,116666284,116666326,-" ; protein_id "ENSP00000321184.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "NFATC2--IGSF3^ENST00000318837.6" ; transcript_name "IGSF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NFATC2--IGSF3 HAVANA gene 2273 19671 . + . FI_gene_label "NFATC2^ENSG00000101096.20" ; ID "NFATC2--IGSF3^NFATC2^ENSG00000101096.20" ; ccdsid "CCDS33488.1" ; exon_id "ENSE00001455518.1" ; exon_number 1 ; gene_id "NFATC2--IGSF3^NFATC2^ENSG00000101096.20" ; gene_name NFATC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032747.4" ; havana_transcript "OTTHUMT00000079729.3" ; hgnc_id "HGNC:7776" ; level 2 ; orig_coord_info "chr20,51542370,51542499,-" ; protein_id "ENSP00000360619.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "NFATC2--IGSF3^ENST00000371564.8" ; transcript_name "NFATC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NFATC2--IGSF3 HAVANA mRNA 2273 19671 . + . FI_gene_label "NFATC2^ENSG00000101096.20" ; ID "NFATC2--IGSF3^ENST00000371564.8" ; Parent "NFATC2--IGSF3^NFATC2^ENSG00000101096.20" ; ccdsid "CCDS33488.1" ; exon_id "ENSE00001455518.1" ; exon_number 1 ; gene_id "NFATC2--IGSF3^NFATC2^ENSG00000101096.20" ; gene_name NFATC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032747.4" ; havana_transcript "OTTHUMT00000079729.3" ; hgnc_id "HGNC:7776" ; level 2 ; orig_coord_info "chr20,51542370,51542499,-" ; protein_id "ENSP00000360619.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "NFATC2--IGSF3^ENST00000371564.8" ; transcript_name "NFATC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NINJ1--DENND1A HAVANA gene 9642 36957 . + . FI_gene_label "DENND1A^ENSG00000119522.16" ; ID "NINJ1--DENND1A^DENND1A^ENSG00000119522.16" ; ccdsid "CCDS87687.1" ; exon_id "ENSE00003643105.1" ; exon_number 2 ; gene_id "NINJ1--DENND1A^DENND1A^ENSG00000119522.16" ; gene_name DENND1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000020643.1" ; havana_transcript "OTTHUMT00000053998.1" ; hgnc_id "HGNC:29324" ; level 2 ; orig_coord_info "chr9,123878951,123878992,-" ; protein_id "ENSP00000362720.1" ; tag basic CCDS ; transcript_id "NINJ1--DENND1A^ENST00000373618.1" ; transcript_name "DENND1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
NINJ1--DENND1A HAVANA mRNA 9642 36957 . + . FI_gene_label "DENND1A^ENSG00000119522.16" ; ID "NINJ1--DENND1A^ENST00000373618.1" ; Parent "NINJ1--DENND1A^DENND1A^ENSG00000119522.16" ; ccdsid "CCDS87687.1" ; exon_id "ENSE00003643105.1" ; exon_number 2 ; gene_id "NINJ1--DENND1A^DENND1A^ENSG00000119522.16" ; gene_name DENND1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000020643.1" ; havana_transcript "OTTHUMT00000053998.1" ; hgnc_id "HGNC:29324" ; level 2 ; orig_coord_info "chr9,123878951,123878992,-" ; protein_id "ENSP00000362720.1" ; tag basic CCDS ; transcript_id "NINJ1--DENND1A^ENST00000373618.1" ; transcript_name "DENND1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NINJ1--DENND1A HAVANA gene 1001 6641 . + . FI_gene_label "NINJ1^ENSG00000131669.10" ; ID "NINJ1--DENND1A^NINJ1^ENSG00000131669.10" ; ccdsid "CCDS6703.1" ; exon_id "ENSE00001467135.2" ; exon_number 1 ; gene_id "NINJ1--DENND1A^NINJ1^ENSG00000131669.10" ; gene_name NINJ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020242.3" ; havana_transcript "OTTHUMT00000053123.3" ; hgnc_id "HGNC:7824" ; level 2 ; orig_coord_info "chr9,93134143,93134217,-" ; protein_id "ENSP00000364595.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NINJ1--DENND1A^ENST00000375446.5" ; transcript_name "NINJ1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NINJ1--DENND1A HAVANA mRNA 1001 6641 . + . FI_gene_label "NINJ1^ENSG00000131669.10" ; ID "NINJ1--DENND1A^ENST00000375446.5" ; Parent "NINJ1--DENND1A^NINJ1^ENSG00000131669.10" ; ccdsid "CCDS6703.1" ; exon_id "ENSE00001467135.2" ; exon_number 1 ; gene_id "NINJ1--DENND1A^NINJ1^ENSG00000131669.10" ; gene_name NINJ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020242.3" ; havana_transcript "OTTHUMT00000053123.3" ; hgnc_id "HGNC:7824" ; level 2 ; orig_coord_info "chr9,93134143,93134217,-" ; protein_id "ENSP00000364595.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NINJ1--DENND1A^ENST00000375446.5" ; transcript_name "NINJ1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OR8D1--OR8A1 HAVANA gene 16271 17648 . + . FI_gene_label "OR8A1^ENSG00000196119.8" ; ID "OR8D1--OR8A1^OR8A1^ENSG00000196119.8" ; exon_id "ENSE00001014261.5" ; exon_number 1 ; gene_id "OR8D1--OR8A1^OR8A1^ENSG00000196119.8" ; gene_name OR8A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165923.3" ; havana_transcript "OTTHUMT00000387062.3" ; hgnc_id "HGNC:8469" ; level 2 ; orig_coord_info "chr11,124570120,124571046,+" ; protein_id "ENSP00000284287.4" ; tag basic MANE_Select appris_principal_1 ; transcript_id "OR8D1--OR8A1^ENST00000284287.6" ; transcript_name "OR8A1-201" ; transcript_support_level NA ; transcript_type protein_coding
OR8D1--OR8A1 HAVANA mRNA 16271 17648 . + . FI_gene_label "OR8A1^ENSG00000196119.8" ; ID "OR8D1--OR8A1^ENST00000284287.6" ; Parent "OR8D1--OR8A1^OR8A1^ENSG00000196119.8" ; exon_id "ENSE00001014261.5" ; exon_number 1 ; gene_id "OR8D1--OR8A1^OR8A1^ENSG00000196119.8" ; gene_name OR8A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165923.3" ; havana_transcript "OTTHUMT00000387062.3" ; hgnc_id "HGNC:8469" ; level 2 ; orig_coord_info "chr11,124570120,124571046,+" ; protein_id "ENSP00000284287.4" ; tag basic MANE_Select appris_principal_1 ; transcript_id "OR8D1--OR8A1^ENST00000284287.6" ; transcript_name "OR8A1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
OR8D1--OR8A1 HAVANA gene 4219 5244 . + . FI_gene_label "OR8D1^ENSG00000196341.3" ; ID "OR8D1--OR8A1^OR8D1^ENSG00000196341.3" ; ccdsid "CCDS31706.1" ; exon_id "ENSE00001413995.2" ; exon_number 1 ; gene_id "OR8D1--OR8A1^OR8D1^ENSG00000196341.3" ; gene_name OR8D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165977.2" ; havana_transcript "OTTHUMT00000387285.2" ; hgnc_id "HGNC:8481" ; level 2 ; orig_coord_info "chr11,124309843,124310766,-" ; protein_id "ENSP00000350474.2" ; tag basic appris_principal_1 CCDS ; transcript_id "OR8D1--OR8A1^ENST00000357821.2" ; transcript_name "OR8D1-201" ; transcript_support_level NA ; transcript_type protein_coding
OR8D1--OR8A1 HAVANA mRNA 4219 5244 . + . FI_gene_label "OR8D1^ENSG00000196341.3" ; ID "OR8D1--OR8A1^ENST00000357821.2" ; Parent "OR8D1--OR8A1^OR8D1^ENSG00000196341.3" ; ccdsid "CCDS31706.1" ; exon_id "ENSE00001413995.2" ; exon_number 1 ; gene_id "OR8D1--OR8A1^OR8D1^ENSG00000196341.3" ; gene_name OR8D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165977.2" ; havana_transcript "OTTHUMT00000387285.2" ; hgnc_id "HGNC:8481" ; level 2 ; orig_coord_info "chr11,124309843,124310766,-" ; protein_id "ENSP00000350474.2" ; tag basic appris_principal_1 CCDS ; transcript_id "OR8D1--OR8A1^ENST00000357821.2" ; transcript_name "OR8D1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PAPOLA--AK7 HAVANA gene 1941 30890 . + . FI_gene_label "PAPOLA^ENSG00000090060.18" ; ID "PAPOLA--AK7^PAPOLA^ENSG00000090060.18" ; ccdsid "CCDS9946.1" ; exon_id "ENSE00002461848.1" ; exon_number 1 ; gene_id "PAPOLA--AK7^PAPOLA^ENSG00000090060.18" ; gene_name PAPOLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000171441.5" ; havana_transcript "OTTHUMT00000413411.2" ; hgnc_id "HGNC:14981" ; level 2 ; orig_coord_info "chr14,96502593,96502600,+" ; protein_id "ENSP00000216277.8" ; tag basic appris_principal_2 CCDS ; transcript_id "PAPOLA--AK7^ENST00000216277.12" ; transcript_name "PAPOLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
PAPOLA--AK7 HAVANA mRNA 1941 30890 . + . FI_gene_label "PAPOLA^ENSG00000090060.18" ; ID "PAPOLA--AK7^ENST00000216277.12" ; Parent "PAPOLA--AK7^PAPOLA^ENSG00000090060.18" ; ccdsid "CCDS9946.1" ; exon_id "ENSE00002461848.1" ; exon_number 1 ; gene_id "PAPOLA--AK7^PAPOLA^ENSG00000090060.18" ; gene_name PAPOLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000171441.5" ; havana_transcript "OTTHUMT00000413411.2" ; hgnc_id "HGNC:14981" ; level 2 ; orig_coord_info "chr14,96502593,96502600,+" ; protein_id "ENSP00000216277.8" ; tag basic appris_principal_2 CCDS ; transcript_id "PAPOLA--AK7^ENST00000216277.12" ; transcript_name "PAPOLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PAPOLA--AK7 HAVANA gene 33891 56288 . + . FI_gene_label "AK7^ENSG00000140057.9" ; ID "PAPOLA--AK7^AK7^ENSG00000140057.9" ; ccdsid "CCDS9945.1" ; exon_id "ENSE00001175774.4" ; exon_number 1 ; gene_id "PAPOLA--AK7^AK7^ENSG00000140057.9" ; gene_name AK7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171421.2" ; havana_transcript "OTTHUMT00000413340.2" ; hgnc_id "HGNC:20091" ; level 2 ; orig_coord_info "chr14,96392155,96392259,+" ; protein_id "ENSP00000267584.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PAPOLA--AK7^ENST00000267584.9" ; transcript_name "AK7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PAPOLA--AK7 HAVANA mRNA 33891 56288 . + . FI_gene_label "AK7^ENSG00000140057.9" ; ID "PAPOLA--AK7^ENST00000267584.9" ; Parent "PAPOLA--AK7^AK7^ENSG00000140057.9" ; ccdsid "CCDS9945.1" ; exon_id "ENSE00001175774.4" ; exon_number 1 ; gene_id "PAPOLA--AK7^AK7^ENSG00000140057.9" ; gene_name AK7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171421.2" ; havana_transcript "OTTHUMT00000413340.2" ; hgnc_id "HGNC:20091" ; level 2 ; orig_coord_info "chr14,96392155,96392259,+" ; protein_id "ENSP00000267584.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PAPOLA--AK7^ENST00000267584.9" ; transcript_name "AK7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PBX3--PRRT1B HAVANA gene 1001 21208 . + . FI_gene_label "PBX3^ENSG00000167081.18" ; ID "PBX3--PRRT1B^PBX3^ENSG00000167081.18" ; ccdsid "CCDS83416.1" ; exon_id "ENSE00001460675.3" ; exon_number 1 ; gene_id "PBX3--PRRT1B^PBX3^ENSG00000167081.18" ; gene_name PBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020684.6" ; havana_transcript "OTTHUMT00000054100.2" ; hgnc_id "HGNC:8634" ; level 2 ; orig_coord_info "chr9,125747454,125747653,+" ; protein_id "ENSP00000341990.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "PBX3--PRRT1B^ENST00000342287.9" ; transcript_name "PBX3-201" ; transcript_support_level 5 ; transcript_type protein_coding
PBX3--PRRT1B HAVANA mRNA 1001 21208 . + . FI_gene_label "PBX3^ENSG00000167081.18" ; ID "PBX3--PRRT1B^ENST00000342287.9" ; Parent "PBX3--PRRT1B^PBX3^ENSG00000167081.18" ; ccdsid "CCDS83416.1" ; exon_id "ENSE00001460675.3" ; exon_number 1 ; gene_id "PBX3--PRRT1B^PBX3^ENSG00000167081.18" ; gene_name PBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020684.6" ; havana_transcript "OTTHUMT00000054100.2" ; hgnc_id "HGNC:8634" ; level 2 ; orig_coord_info "chr9,125747454,125747653,+" ; protein_id "ENSP00000341990.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "PBX3--PRRT1B^ENST00000342287.9" ; transcript_name "PBX3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PBX3--PRRT1B HAVANA gene 24209 28520 . + . FI_gene_label "PRRT1B^ENSG00000283526.1" ; ID "PBX3--PRRT1B^PRRT1B^ENSG00000283526.1" ; exon_id "ENSE00003795684.1" ; exon_number 1 ; gene_id "PBX3--PRRT1B^PRRT1B^ENSG00000283526.1" ; gene_name PRRT1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000191656.1" ; havana_transcript "OTTHUMT00000489145.1" ; hgnc_id "HGNC:53642" ; level 2 ; orig_coord_info "chr9,131545616,131545640,+" ; protein_id "ENSP00000490857.1" ; tag CAGE_supported_TSS basic appris_principal_1 ; transcript_id "PBX3--PRRT1B^ENST00000636672.1" ; transcript_name "PRRT1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
PBX3--PRRT1B HAVANA mRNA 24209 28520 . + . FI_gene_label "PRRT1B^ENSG00000283526.1" ; ID "PBX3--PRRT1B^ENST00000636672.1" ; Parent "PBX3--PRRT1B^PRRT1B^ENSG00000283526.1" ; exon_id "ENSE00003795684.1" ; exon_number 1 ; gene_id "PBX3--PRRT1B^PRRT1B^ENSG00000283526.1" ; gene_name PRRT1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000191656.1" ; havana_transcript "OTTHUMT00000489145.1" ; hgnc_id "HGNC:53642" ; level 2 ; orig_coord_info "chr9,131545616,131545640,+" ; protein_id "ENSP00000490857.1" ; tag CAGE_supported_TSS basic appris_principal_1 ; transcript_id "PBX3--PRRT1B^ENST00000636672.1" ; transcript_name "PRRT1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PBX3--UCK1 HAVANA gene 1001 21208 . + . FI_gene_label "PBX3^ENSG00000167081.18" ; ID "PBX3--UCK1^PBX3^ENSG00000167081.18" ; ccdsid "CCDS83416.1" ; exon_id "ENSE00001460675.3" ; exon_number 1 ; gene_id "PBX3--UCK1^PBX3^ENSG00000167081.18" ; gene_name PBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020684.6" ; havana_transcript "OTTHUMT00000054100.2" ; hgnc_id "HGNC:8634" ; level 2 ; orig_coord_info "chr9,125747454,125747653,+" ; protein_id "ENSP00000341990.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "PBX3--UCK1^ENST00000342287.9" ; transcript_name "PBX3-201" ; transcript_support_level 5 ; transcript_type protein_coding
PBX3--UCK1 HAVANA mRNA 1001 21208 . + . FI_gene_label "PBX3^ENSG00000167081.18" ; ID "PBX3--UCK1^ENST00000342287.9" ; Parent "PBX3--UCK1^PBX3^ENSG00000167081.18" ; ccdsid "CCDS83416.1" ; exon_id "ENSE00001460675.3" ; exon_number 1 ; gene_id "PBX3--UCK1^PBX3^ENSG00000167081.18" ; gene_name PBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020684.6" ; havana_transcript "OTTHUMT00000054100.2" ; hgnc_id "HGNC:8634" ; level 2 ; orig_coord_info "chr9,125747454,125747653,+" ; protein_id "ENSP00000341990.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "PBX3--UCK1^ENST00000342287.9" ; transcript_name "PBX3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PBX3--UCK1 HAVANA gene 24214 30381 . + . FI_gene_label "UCK1^ENSG00000130717.13" ; ID "PBX3--UCK1^UCK1^ENSG00000130717.13" ; ccdsid "CCDS48046.1" ; exon_id "ENSE00001815928.1" ; exon_number 1 ; gene_id "PBX3--UCK1^UCK1^ENSG00000130717.13" ; gene_name UCK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020823.4" ; havana_transcript "OTTHUMT00000054727.1" ; hgnc_id "HGNC:14859" ; level 2 ; orig_coord_info "chr9,131531067,131531174,-" ; protein_id "ENSP00000361282.3" ; tag basic CCDS ; transcript_id "PBX3--UCK1^ENST00000372208.7" ; transcript_name "UCK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PBX3--UCK1 HAVANA mRNA 24214 30381 . + . FI_gene_label "UCK1^ENSG00000130717.13" ; ID "PBX3--UCK1^ENST00000372208.7" ; Parent "PBX3--UCK1^UCK1^ENSG00000130717.13" ; ccdsid "CCDS48046.1" ; exon_id "ENSE00001815928.1" ; exon_number 1 ; gene_id "PBX3--UCK1^UCK1^ENSG00000130717.13" ; gene_name UCK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020823.4" ; havana_transcript "OTTHUMT00000054727.1" ; hgnc_id "HGNC:14859" ; level 2 ; orig_coord_info "chr9,131531067,131531174,-" ; protein_id "ENSP00000361282.3" ; tag basic CCDS ; transcript_id "PBX3--UCK1^ENST00000372208.7" ; transcript_name "UCK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PDE8A--SCAND2P HAVANA gene 1001 28751 . + . FI_gene_label "PDE8A^ENSG00000073417.15" ; ID "PDE8A--SCAND2P^PDE8A^ENSG00000073417.15" ; ccdsid "CCDS10336.1" ; exon_id "ENSE00001655579.1" ; exon_number 2 ; gene_id "PDE8A--SCAND2P^PDE8A^ENSG00000073417.15" ; gene_name PDE8A ; gene_type protein_coding ; havana_gene "OTTHUMG00000148670.6" ; havana_transcript "OTTHUMT00000309018.1" ; hgnc_id "HGNC:8793" ; level 2 ; orig_coord_info "chr15,84982163,84982348,+" ; protein_id "ENSP00000311453.4" ; tag basic appris_principal_4 CCDS ; transcript_id "PDE8A--SCAND2P^ENST00000310298.8" ; transcript_name "PDE8A-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDE8A--SCAND2P HAVANA mRNA 1001 28751 . + . FI_gene_label "PDE8A^ENSG00000073417.15" ; ID "PDE8A--SCAND2P^ENST00000310298.8" ; Parent "PDE8A--SCAND2P^PDE8A^ENSG00000073417.15" ; ccdsid "CCDS10336.1" ; exon_id "ENSE00001655579.1" ; exon_number 2 ; gene_id "PDE8A--SCAND2P^PDE8A^ENSG00000073417.15" ; gene_name PDE8A ; gene_type protein_coding ; havana_gene "OTTHUMG00000148670.6" ; havana_transcript "OTTHUMT00000309018.1" ; hgnc_id "HGNC:8793" ; level 2 ; orig_coord_info "chr15,84982163,84982348,+" ; protein_id "ENSP00000311453.4" ; tag basic appris_principal_4 CCDS ; transcript_id "PDE8A--SCAND2P^ENST00000310298.8" ; transcript_name "PDE8A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PKP2--ASS1P14 HAVANA gene 1022 20050 . + . FI_gene_label "PKP2^ENSG00000057294.15" ; ID "PKP2--ASS1P14^PKP2^ENSG00000057294.15" ; ccdsid "CCDS8731.1" ; exon_id "ENSE00002372317.1" ; exon_number 1 ; gene_id "PKP2--ASS1P14^PKP2^ENSG00000057294.15" ; gene_name PKP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169500.3" ; havana_transcript "OTTHUMT00000404449.1" ; hgnc_id "HGNC:9024" ; level 2 ; orig_coord_info "chr12,32896509,32896731,-" ; protein_id "ENSP00000070846.6" ; tag basic CCDS ; transcript_id "PKP2--ASS1P14^ENST00000070846.10" ; transcript_name "PKP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PKP2--ASS1P14 HAVANA mRNA 1022 20050 . + . FI_gene_label "PKP2^ENSG00000057294.15" ; ID "PKP2--ASS1P14^ENST00000070846.10" ; Parent "PKP2--ASS1P14^PKP2^ENSG00000057294.15" ; ccdsid "CCDS8731.1" ; exon_id "ENSE00002372317.1" ; exon_number 1 ; gene_id "PKP2--ASS1P14^PKP2^ENSG00000057294.15" ; gene_name PKP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169500.3" ; havana_transcript "OTTHUMT00000404449.1" ; hgnc_id "HGNC:9024" ; level 2 ; orig_coord_info "chr12,32896509,32896731,-" ; protein_id "ENSP00000070846.6" ; tag basic CCDS ; transcript_id "PKP2--ASS1P14^ENST00000070846.10" ; transcript_name "PKP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PNPLA7--DPH7 HAVANA gene 1019 32853 . + . FI_gene_label "PNPLA7^ENSG00000130653.16" ; ID "PNPLA7--DPH7^PNPLA7^ENSG00000130653.16" ; ccdsid "CCDS7045.1" ; exon_id "ENSE00001938934.1" ; exon_number 1 ; gene_id "PNPLA7--DPH7^PNPLA7^ENSG00000130653.16" ; gene_name PNPLA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020990.12" ; havana_transcript "OTTHUMT00000254787.2" ; hgnc_id "HGNC:24768" ; level 2 ; orig_coord_info "chr9,137550168,137550197,-" ; protein_id "ENSP00000277531.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "PNPLA7--DPH7^ENST00000277531.8" ; transcript_name "PNPLA7-201" ; transcript_support_level 2 ; transcript_type protein_coding
PNPLA7--DPH7 HAVANA mRNA 1019 32853 . + . FI_gene_label "PNPLA7^ENSG00000130653.16" ; ID "PNPLA7--DPH7^ENST00000277531.8" ; Parent "PNPLA7--DPH7^PNPLA7^ENSG00000130653.16" ; ccdsid "CCDS7045.1" ; exon_id "ENSE00001938934.1" ; exon_number 1 ; gene_id "PNPLA7--DPH7^PNPLA7^ENSG00000130653.16" ; gene_name PNPLA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020990.12" ; havana_transcript "OTTHUMT00000254787.2" ; hgnc_id "HGNC:24768" ; level 2 ; orig_coord_info "chr9,137550168,137550197,-" ; protein_id "ENSP00000277531.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "PNPLA7--DPH7^ENST00000277531.8" ; transcript_name "PNPLA7-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PNPLA7--DPH7 HAVANA gene 35855 45938 . + . FI_gene_label "DPH7^ENSG00000148399.13" ; ID "PNPLA7--DPH7^DPH7^ENSG00000148399.13" ; ccdsid "CCDS7047.1" ; exon_id "ENSE00001314922.2" ; exon_number 1 ; gene_id "PNPLA7--DPH7^DPH7^ENSG00000148399.13" ; gene_name DPH7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020991.2" ; havana_transcript "OTTHUMT00000055350.2" ; hgnc_id "HGNC:25199" ; level 2 ; orig_coord_info "chr9,137578625,137578777,-" ; protein_id "ENSP00000277540.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PNPLA7--DPH7^ENST00000277540.7" ; transcript_name "DPH7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PNPLA7--DPH7 HAVANA mRNA 35855 45938 . + . FI_gene_label "DPH7^ENSG00000148399.13" ; ID "PNPLA7--DPH7^ENST00000277540.7" ; Parent "PNPLA7--DPH7^DPH7^ENSG00000148399.13" ; ccdsid "CCDS7047.1" ; exon_id "ENSE00001314922.2" ; exon_number 1 ; gene_id "PNPLA7--DPH7^DPH7^ENSG00000148399.13" ; gene_name DPH7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020991.2" ; havana_transcript "OTTHUMT00000055350.2" ; hgnc_id "HGNC:25199" ; level 2 ; orig_coord_info "chr9,137578625,137578777,-" ; protein_id "ENSP00000277540.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PNPLA7--DPH7^ENST00000277540.7" ; transcript_name "DPH7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PREX1--TBX4 HAVANA gene 46365 57899 . + . FI_gene_label "TBX4^ENSG00000121075.11" ; ID "PREX1--TBX4^TBX4^ENSG00000121075.11" ; ccdsid "CCDS11629.1" ; exon_id "ENSE00000820434.1" ; exon_number 1 ; gene_id "PREX1--TBX4^TBX4^ENSG00000121075.11" ; gene_name TBX4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180078.4" ; havana_transcript "OTTHUMT00000449649.1" ; hgnc_id "HGNC:11603" ; level 2 ; orig_coord_info "chr17,61456491,61456676,+" ; protein_id "ENSP00000240335.1" ; tag NAGNAG_splice_site basic appris_principal_4 CCDS ; transcript_id "PREX1--TBX4^ENST00000240335.1" ; transcript_name "TBX4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PREX1--TBX4 HAVANA mRNA 46365 57899 . + . FI_gene_label "TBX4^ENSG00000121075.11" ; ID "PREX1--TBX4^ENST00000240335.1" ; Parent "PREX1--TBX4^TBX4^ENSG00000121075.11" ; ccdsid "CCDS11629.1" ; exon_id "ENSE00000820434.1" ; exon_number 1 ; gene_id "PREX1--TBX4^TBX4^ENSG00000121075.11" ; gene_name TBX4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180078.4" ; havana_transcript "OTTHUMT00000449649.1" ; hgnc_id "HGNC:11603" ; level 2 ; orig_coord_info "chr17,61456491,61456676,+" ; protein_id "ENSP00000240335.1" ; tag NAGNAG_splice_site basic appris_principal_4 CCDS ; transcript_id "PREX1--TBX4^ENST00000240335.1" ; transcript_name "TBX4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PREX1--TBX4 HAVANA gene 1001 42190 . + . FI_gene_label "PREX1^ENSG00000124126.14" ; ID "PREX1--TBX4^PREX1^ENSG00000124126.14" ; ccdsid "CCDS13410.1" ; exon_id "ENSE00001456581.2" ; exon_number 1 ; gene_id "PREX1--TBX4^PREX1^ENSG00000124126.14" ; gene_name PREX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032685.5" ; havana_transcript "OTTHUMT00000079623.2" ; hgnc_id "HGNC:32594" ; level 2 ; orig_coord_info "chr20,48827642,48827860,-" ; protein_id "ENSP00000361009.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PREX1--TBX4^ENST00000371941.4" ; transcript_name "PREX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PREX1--TBX4 HAVANA mRNA 1001 42190 . + . FI_gene_label "PREX1^ENSG00000124126.14" ; ID "PREX1--TBX4^ENST00000371941.4" ; Parent "PREX1--TBX4^PREX1^ENSG00000124126.14" ; ccdsid "CCDS13410.1" ; exon_id "ENSE00001456581.2" ; exon_number 1 ; gene_id "PREX1--TBX4^PREX1^ENSG00000124126.14" ; gene_name PREX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032685.5" ; havana_transcript "OTTHUMT00000079623.2" ; hgnc_id "HGNC:32594" ; level 2 ; orig_coord_info "chr20,48827642,48827860,-" ; protein_id "ENSP00000361009.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PREX1--TBX4^ENST00000371941.4" ; transcript_name "PREX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PSMD6-AS2--PRICKLE2 HAVANA gene 8526 32213 . + . FI_gene_label "PRICKLE2^ENSG00000163637.13" ; ID "PSMD6-AS2--PRICKLE2^PRICKLE2^ENSG00000163637.13" ; exon_id "ENSE00002621803.2" ; exon_number 1 ; gene_id "PSMD6-AS2--PRICKLE2^PRICKLE2^ENSG00000163637.13" ; gene_name PRICKLE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158789.6" ; havana_transcript "OTTHUMT00000431928.2" ; hgnc_id "HGNC:20340" ; level 2 ; orig_coord_info "chr3,64445331,64445372,-" ; protein_id "ENSP00000295902.7" ; tag dotter_confirmed not_organism_supported basic appris_principal_1 ; transcript_id "PSMD6-AS2--PRICKLE2^ENST00000295902.11" ; transcript_name "PRICKLE2-201" ; transcript_support_level 5 ; transcript_type protein_coding
PSMD6-AS2--PRICKLE2 HAVANA mRNA 8526 32213 . + . FI_gene_label "PRICKLE2^ENSG00000163637.13" ; ID "PSMD6-AS2--PRICKLE2^ENST00000295902.11" ; Parent "PSMD6-AS2--PRICKLE2^PRICKLE2^ENSG00000163637.13" ; exon_id "ENSE00002621803.2" ; exon_number 1 ; gene_id "PSMD6-AS2--PRICKLE2^PRICKLE2^ENSG00000163637.13" ; gene_name PRICKLE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158789.6" ; havana_transcript "OTTHUMT00000431928.2" ; hgnc_id "HGNC:20340" ; level 2 ; orig_coord_info "chr3,64445331,64445372,-" ; protein_id "ENSP00000295902.7" ; tag dotter_confirmed not_organism_supported basic appris_principal_1 ; transcript_id "PSMD6-AS2--PRICKLE2^ENST00000295902.11" ; transcript_name "PRICKLE2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPRN2--DYNC2I1 HAVANA gene 1051 27868 . + . FI_gene_label "PTPRN2^ENSG00000155093.19" ; ID "PTPRN2--DYNC2I1^PTPRN2^ENSG00000155093.19" ; ccdsid "CCDS5949.1" ; exon_id "ENSE00001702194.1" ; exon_number 1 ; gene_id "PTPRN2--DYNC2I1^PTPRN2^ENSG00000155093.19" ; gene_name PTPRN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152646.5" ; havana_transcript "OTTHUMT00000327121.1" ; hgnc_id "HGNC:9677" ; level 2 ; orig_coord_info "chr7,158587558,158587669,-" ; protein_id "ENSP00000374064.3" ; tag basic CCDS ; transcript_id "PTPRN2--DYNC2I1^ENST00000389413.7" ; transcript_name "PTPRN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPRN2--DYNC2I1 HAVANA mRNA 1051 27868 . + . FI_gene_label "PTPRN2^ENSG00000155093.19" ; ID "PTPRN2--DYNC2I1^ENST00000389413.7" ; Parent "PTPRN2--DYNC2I1^PTPRN2^ENSG00000155093.19" ; ccdsid "CCDS5949.1" ; exon_id "ENSE00001702194.1" ; exon_number 1 ; gene_id "PTPRN2--DYNC2I1^PTPRN2^ENSG00000155093.19" ; gene_name PTPRN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152646.5" ; havana_transcript "OTTHUMT00000327121.1" ; hgnc_id "HGNC:9677" ; level 2 ; orig_coord_info "chr7,158587558,158587669,-" ; protein_id "ENSP00000374064.3" ; tag basic CCDS ; transcript_id "PTPRN2--DYNC2I1^ENST00000389413.7" ; transcript_name "PTPRN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRN2--DYNC2I1 HAVANA gene 32062 33882 . + . FI_gene_label "DYNC2I1^ENSG00000126870.16" ; ID "PTPRN2--DYNC2I1^DYNC2I1^ENSG00000126870.16" ; exon_id "ENSE00001786738.1" ; exon_number 3 ; gene_id "PTPRN2--DYNC2I1^DYNC2I1^ENSG00000126870.16" ; gene_name DYNC2I1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151443.5" ; havana_transcript "OTTHUMT00000322671.4" ; hgnc_id "HGNC:21862" ; level 2 ; orig_coord_info "chr7,158871211,158871499,+" ; protein_id "ENSP00000380330.3" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PTPRN2--DYNC2I1^ENST00000397143.3" ; transcript_name "DYNC2I1-201" ; transcript_support_level 3 ; transcript_type protein_coding
PTPRN2--DYNC2I1 HAVANA mRNA 32062 33882 . + . FI_gene_label "DYNC2I1^ENSG00000126870.16" ; ID "PTPRN2--DYNC2I1^ENST00000397143.3" ; Parent "PTPRN2--DYNC2I1^DYNC2I1^ENSG00000126870.16" ; exon_id "ENSE00001786738.1" ; exon_number 3 ; gene_id "PTPRN2--DYNC2I1^DYNC2I1^ENSG00000126870.16" ; gene_name DYNC2I1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151443.5" ; havana_transcript "OTTHUMT00000322671.4" ; hgnc_id "HGNC:21862" ; level 2 ; orig_coord_info "chr7,158871211,158871499,+" ; protein_id "ENSP00000380330.3" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PTPRN2--DYNC2I1^ENST00000397143.3" ; transcript_name "DYNC2I1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
PTPRN2--ESYT2 HAVANA gene 31494 59004 . + . FI_gene_label "ESYT2^ENSG00000117868.17" ; ID "PTPRN2--ESYT2^ESYT2^ENSG00000117868.17" ; exon_id "ENSE00002700428.1" ; exon_number 1 ; gene_id "PTPRN2--ESYT2^ESYT2^ENSG00000117868.17" ; gene_name ESYT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151436.3" ; havana_transcript "OTTHUMT00000322647.2" ; hgnc_id "HGNC:22211" ; level 2 ; orig_coord_info "chr7,158829089,158829418,-" ; protein_id "ENSP00000251527.6" ; tag basic appris_alternative_2 ; transcript_id "PTPRN2--ESYT2^ENST00000251527.10" ; transcript_name "ESYT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPRN2--ESYT2 HAVANA mRNA 31494 59004 . + . FI_gene_label "ESYT2^ENSG00000117868.17" ; ID "PTPRN2--ESYT2^ENST00000251527.10" ; Parent "PTPRN2--ESYT2^ESYT2^ENSG00000117868.17" ; exon_id "ENSE00002700428.1" ; exon_number 1 ; gene_id "PTPRN2--ESYT2^ESYT2^ENSG00000117868.17" ; gene_name ESYT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151436.3" ; havana_transcript "OTTHUMT00000322647.2" ; hgnc_id "HGNC:22211" ; level 2 ; orig_coord_info "chr7,158829089,158829418,-" ; protein_id "ENSP00000251527.6" ; tag basic appris_alternative_2 ; transcript_id "PTPRN2--ESYT2^ENST00000251527.10" ; transcript_name "ESYT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRN2--ESYT2 HAVANA gene 1051 27868 . + . FI_gene_label "PTPRN2^ENSG00000155093.19" ; ID "PTPRN2--ESYT2^PTPRN2^ENSG00000155093.19" ; ccdsid "CCDS5949.1" ; exon_id "ENSE00001702194.1" ; exon_number 1 ; gene_id "PTPRN2--ESYT2^PTPRN2^ENSG00000155093.19" ; gene_name PTPRN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152646.5" ; havana_transcript "OTTHUMT00000327121.1" ; hgnc_id "HGNC:9677" ; level 2 ; orig_coord_info "chr7,158587558,158587669,-" ; protein_id "ENSP00000374064.3" ; tag basic CCDS ; transcript_id "PTPRN2--ESYT2^ENST00000389413.7" ; transcript_name "PTPRN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPRN2--ESYT2 HAVANA mRNA 1051 27868 . + . FI_gene_label "PTPRN2^ENSG00000155093.19" ; ID "PTPRN2--ESYT2^ENST00000389413.7" ; Parent "PTPRN2--ESYT2^PTPRN2^ENSG00000155093.19" ; ccdsid "CCDS5949.1" ; exon_id "ENSE00001702194.1" ; exon_number 1 ; gene_id "PTPRN2--ESYT2^PTPRN2^ENSG00000155093.19" ; gene_name PTPRN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152646.5" ; havana_transcript "OTTHUMT00000327121.1" ; hgnc_id "HGNC:9677" ; level 2 ; orig_coord_info "chr7,158587558,158587669,-" ; protein_id "ENSP00000374064.3" ; tag basic CCDS ; transcript_id "PTPRN2--ESYT2^ENST00000389413.7" ; transcript_name "PTPRN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RAD51C--ATXN7 HAVANA gene 20990 54804 . + . FI_gene_label "ATXN7^ENSG00000163635.20" ; ID "RAD51C--ATXN7^ATXN7^ENSG00000163635.20" ; ccdsid "CCDS43102.1" ; exon_id "ENSE00003898371.1" ; exon_number 3 ; gene_id "RAD51C--ATXN7^ATXN7^ENSG00000163635.20" ; gene_name ATXN7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192515.2" ; havana_transcript "OTTHUMT00000352070.1" ; hgnc_id "HGNC:10560" ; level 2 ; orig_coord_info "chr3,63912599,63912923,+" ; protein_id "ENSP00000295900.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "RAD51C--ATXN7^ENST00000295900.10" ; transcript_name "ATXN7-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAD51C--ATXN7 HAVANA mRNA 20990 54804 . + . FI_gene_label "ATXN7^ENSG00000163635.20" ; ID "RAD51C--ATXN7^ENST00000295900.10" ; Parent "RAD51C--ATXN7^ATXN7^ENSG00000163635.20" ; ccdsid "CCDS43102.1" ; exon_id "ENSE00003898371.1" ; exon_number 3 ; gene_id "RAD51C--ATXN7^ATXN7^ENSG00000163635.20" ; gene_name ATXN7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192515.2" ; havana_transcript "OTTHUMT00000352070.1" ; hgnc_id "HGNC:10560" ; level 2 ; orig_coord_info "chr3,63912599,63912923,+" ; protein_id "ENSP00000295900.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "RAD51C--ATXN7^ENST00000295900.10" ; transcript_name "ATXN7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RAD51C--ATXN7 HAVANA gene 1030 16584 . + . FI_gene_label "RAD51C^ENSG00000108384.15" ; ID "RAD51C--ATXN7^RAD51C^ENSG00000108384.15" ; ccdsid "CCDS11611.1" ; exon_id "ENSE00003843383.1" ; exon_number 1 ; gene_id "RAD51C--ATXN7^RAD51C^ENSG00000108384.15" ; gene_name RAD51C ; gene_type protein_coding ; havana_gene "OTTHUMG00000141292.8" ; havana_transcript "OTTHUMT00000280540.4" ; hgnc_id "HGNC:9820" ; level 2 ; orig_coord_info "chr17,58692644,58692788,+" ; protein_id "ENSP00000336701.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RAD51C--ATXN7^ENST00000337432.9" ; transcript_name "RAD51C-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAD51C--ATXN7 HAVANA mRNA 1030 16584 . + . FI_gene_label "RAD51C^ENSG00000108384.15" ; ID "RAD51C--ATXN7^ENST00000337432.9" ; Parent "RAD51C--ATXN7^RAD51C^ENSG00000108384.15" ; ccdsid "CCDS11611.1" ; exon_id "ENSE00003843383.1" ; exon_number 1 ; gene_id "RAD51C--ATXN7^RAD51C^ENSG00000108384.15" ; gene_name RAD51C ; gene_type protein_coding ; havana_gene "OTTHUMG00000141292.8" ; havana_transcript "OTTHUMT00000280540.4" ; hgnc_id "HGNC:9820" ; level 2 ; orig_coord_info "chr17,58692644,58692788,+" ; protein_id "ENSP00000336701.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RAD51C--ATXN7^ENST00000337432.9" ; transcript_name "RAD51C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RASAL2--AL138899.1 HAVANA gene 1001 33803 . + . FI_gene_label "RASAL2^ENSG00000075391.17" ; ID "RASAL2--AL138899.1^RASAL2^ENSG00000075391.17" ; ccdsid "CCDS1321.2" ; exon_id "ENSE00001924890.2" ; exon_number 1 ; gene_id "RASAL2--AL138899.1^RASAL2^ENSG00000075391.17" ; gene_name RASAL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035022.4" ; havana_transcript "OTTHUMT00000352415.1" ; hgnc_id "HGNC:9874" ; level 2 ; orig_coord_info "chr1,178094493,178094694,+" ; protein_id "ENSP00000356621.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RASAL2--AL138899.1^ENST00000367649.8" ; transcript_name "RASAL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RASAL2--AL138899.1 HAVANA mRNA 1001 33803 . + . FI_gene_label "RASAL2^ENSG00000075391.17" ; ID "RASAL2--AL138899.1^ENST00000367649.8" ; Parent "RASAL2--AL138899.1^RASAL2^ENSG00000075391.17" ; ccdsid "CCDS1321.2" ; exon_id "ENSE00001924890.2" ; exon_number 1 ; gene_id "RASAL2--AL138899.1^RASAL2^ENSG00000075391.17" ; gene_name RASAL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035022.4" ; havana_transcript "OTTHUMT00000352415.1" ; hgnc_id "HGNC:9874" ; level 2 ; orig_coord_info "chr1,178094493,178094694,+" ; protein_id "ENSP00000356621.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RASAL2--AL138899.1^ENST00000367649.8" ; transcript_name "RASAL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RASAL2--OR10K2 HAVANA gene 1001 33803 . + . FI_gene_label "RASAL2^ENSG00000075391.17" ; ID "RASAL2--OR10K2^RASAL2^ENSG00000075391.17" ; ccdsid "CCDS1321.2" ; exon_id "ENSE00001924890.2" ; exon_number 1 ; gene_id "RASAL2--OR10K2^RASAL2^ENSG00000075391.17" ; gene_name RASAL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035022.4" ; havana_transcript "OTTHUMT00000352415.1" ; hgnc_id "HGNC:9874" ; level 2 ; orig_coord_info "chr1,178094493,178094694,+" ; protein_id "ENSP00000356621.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RASAL2--OR10K2^ENST00000367649.8" ; transcript_name "RASAL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RASAL2--OR10K2 HAVANA mRNA 1001 33803 . + . FI_gene_label "RASAL2^ENSG00000075391.17" ; ID "RASAL2--OR10K2^ENST00000367649.8" ; Parent "RASAL2--OR10K2^RASAL2^ENSG00000075391.17" ; ccdsid "CCDS1321.2" ; exon_id "ENSE00001924890.2" ; exon_number 1 ; gene_id "RASAL2--OR10K2^RASAL2^ENSG00000075391.17" ; gene_name RASAL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035022.4" ; havana_transcript "OTTHUMT00000352415.1" ; hgnc_id "HGNC:9874" ; level 2 ; orig_coord_info "chr1,178094493,178094694,+" ; protein_id "ENSP00000356621.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RASAL2--OR10K2^ENST00000367649.8" ; transcript_name "RASAL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RASAL2--OR10K2 HAVANA gene 42101 46123 . + . FI_gene_label "OR10K2^ENSG00000180708.6" ; ID "RASAL2--OR10K2^OR10K2^ENSG00000180708.6" ; ccdsid "CCDS30896.1" ; exon_id "ENSE00003812123.1" ; exon_number 2 ; gene_id "RASAL2--OR10K2^OR10K2^ENSG00000180708.6" ; gene_name OR10K2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019638.3" ; havana_transcript "OTTHUMT00000051854.3" ; hgnc_id "HGNC:14826" ; level 2 ; orig_coord_info "chr1,158419931,158420866,-" ; protein_id "ENSP00000493297.1" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "RASAL2--OR10K2^ENST00000641042.1" ; transcript_name "OR10K2-201" ; transcript_type protein_coding
RASAL2--OR10K2 HAVANA mRNA 42101 46123 . + . FI_gene_label "OR10K2^ENSG00000180708.6" ; ID "RASAL2--OR10K2^ENST00000641042.1" ; Parent "RASAL2--OR10K2^OR10K2^ENSG00000180708.6" ; ccdsid "CCDS30896.1" ; exon_id "ENSE00003812123.1" ; exon_number 2 ; gene_id "RASAL2--OR10K2^OR10K2^ENSG00000180708.6" ; gene_name OR10K2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019638.3" ; havana_transcript "OTTHUMT00000051854.3" ; hgnc_id "HGNC:14826" ; level 2 ; orig_coord_info "chr1,158419931,158420866,-" ; protein_id "ENSP00000493297.1" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "RASAL2--OR10K2^ENST00000641042.1" ; transcript_name "OR10K2-201" ; transcript_type protein_coding
L1 and L2 created:
RBM14--RBM4 HAVANA gene 15043 21268 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM14--RBM4^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4 HAVANA mRNA 15043 21268 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM14--RBM4^ENST00000310092.12" ; Parent "RBM14--RBM4^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM14--RBM4 HAVANA gene 1005 12006 . + . FI_gene_label "RBM14^ENSG00000239306.5" ; ID "RBM14--RBM4^RBM14^ENSG00000239306.5" ; ccdsid "CCDS8147.1" ; exon_id "ENSE00003902856.1" ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5" ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5" ; havana_transcript "OTTHUMT00000277128.1" ; hgnc_id "HGNC:14219" ; level 2 ; orig_coord_info "chr11,66616721,66617057,+" ; protein_id "ENSP00000311747.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5" ; transcript_name "RBM14-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4 HAVANA mRNA 1005 12006 . + . FI_gene_label "RBM14^ENSG00000239306.5" ; ID "RBM14--RBM4^ENST00000310137.5" ; Parent "RBM14--RBM4^RBM14^ENSG00000239306.5" ; ccdsid "CCDS8147.1" ; exon_id "ENSE00003902856.1" ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5" ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5" ; havana_transcript "OTTHUMT00000277128.1" ; hgnc_id "HGNC:14219" ; level 2 ; orig_coord_info "chr11,66616721,66617057,+" ; protein_id "ENSP00000311747.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5" ; transcript_name "RBM14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM6--BCAR1 HAVANA gene 41036 54885 . + . FI_gene_label "BCAR1^ENSG00000050820.17" ; ID "RBM6--BCAR1^BCAR1^ENSG00000050820.17" ; ccdsid "CCDS10915.1" ; exon_id "ENSE00001423684.3" ; exon_number 1 ; gene_id "RBM6--BCAR1^BCAR1^ENSG00000050820.17" ; gene_name BCAR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137604.9" ; havana_transcript "OTTHUMT00000269017.2" ; hgnc_id "HGNC:971" ; level 2 ; orig_coord_info "chr16,75251471,75251482,-" ; protein_id "ENSP00000162330.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RBM6--BCAR1^ENST00000162330.10" ; transcript_name "BCAR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM6--BCAR1 HAVANA mRNA 41036 54885 . + . FI_gene_label "BCAR1^ENSG00000050820.17" ; ID "RBM6--BCAR1^ENST00000162330.10" ; Parent "RBM6--BCAR1^BCAR1^ENSG00000050820.17" ; ccdsid "CCDS10915.1" ; exon_id "ENSE00001423684.3" ; exon_number 1 ; gene_id "RBM6--BCAR1^BCAR1^ENSG00000050820.17" ; gene_name BCAR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137604.9" ; havana_transcript "OTTHUMT00000269017.2" ; hgnc_id "HGNC:971" ; level 2 ; orig_coord_info "chr16,75251471,75251482,-" ; protein_id "ENSP00000162330.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RBM6--BCAR1^ENST00000162330.10" ; transcript_name "BCAR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM6--BCAR1 HAVANA gene 1144 26383 . + . FI_gene_label "RBM6^ENSG00000004534.15" ; ID "RBM6--BCAR1^RBM6^ENSG00000004534.15" ; ccdsid "CCDS2809.1" ; exon_id "ENSE00003569056.1" ; exon_number 2 ; gene_id "RBM6--BCAR1^RBM6^ENSG00000004534.15" ; gene_name RBM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156736.13" ; havana_transcript "OTTHUMT00000345528.6" ; hgnc_id "HGNC:9903" ; level 2 ; orig_coord_info "chr3,49962642,49962685,+" ; protein_id "ENSP00000266022.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RBM6--BCAR1^ENST00000266022.9" ; transcript_name "RBM6-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM6--BCAR1 HAVANA mRNA 1144 26383 . + . FI_gene_label "RBM6^ENSG00000004534.15" ; ID "RBM6--BCAR1^ENST00000266022.9" ; Parent "RBM6--BCAR1^RBM6^ENSG00000004534.15" ; ccdsid "CCDS2809.1" ; exon_id "ENSE00003569056.1" ; exon_number 2 ; gene_id "RBM6--BCAR1^RBM6^ENSG00000004534.15" ; gene_name RBM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156736.13" ; havana_transcript "OTTHUMT00000345528.6" ; hgnc_id "HGNC:9903" ; level 2 ; orig_coord_info "chr3,49962642,49962685,+" ; protein_id "ENSP00000266022.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RBM6--BCAR1^ENST00000266022.9" ; transcript_name "RBM6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RGS3--BRD3 HAVANA gene 45683 63867 . + . FI_gene_label "BRD3^ENSG00000169925.17" ; ID "RGS3--BRD3^BRD3^ENSG00000169925.17" ; ccdsid "CCDS6980.1" ; exon_id "ENSE00002693824.1" ; exon_number 2 ; gene_id "RGS3--BRD3^BRD3^ENSG00000169925.17" ; gene_name BRD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021004.8" ; havana_transcript "OTTHUMT00000055390.5" ; hgnc_id "HGNC:1104" ; level 2 ; orig_coord_info "chr9,134053265,134053477,-" ; protein_id "ENSP00000305918.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RGS3--BRD3^ENST00000303407.12" ; transcript_name "BRD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
RGS3--BRD3 HAVANA mRNA 45683 63867 . + . FI_gene_label "BRD3^ENSG00000169925.17" ; ID "RGS3--BRD3^ENST00000303407.12" ; Parent "RGS3--BRD3^BRD3^ENSG00000169925.17" ; ccdsid "CCDS6980.1" ; exon_id "ENSE00002693824.1" ; exon_number 2 ; gene_id "RGS3--BRD3^BRD3^ENSG00000169925.17" ; gene_name BRD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021004.8" ; havana_transcript "OTTHUMT00000055390.5" ; hgnc_id "HGNC:1104" ; level 2 ; orig_coord_info "chr9,134053265,134053477,-" ; protein_id "ENSP00000305918.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RGS3--BRD3^ENST00000303407.12" ; transcript_name "BRD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RGS3--BRD3 HAVANA gene 4788 28217 . + . FI_gene_label "RGS3^ENSG00000138835.22" ; ID "RGS3--BRD3^RGS3^ENSG00000138835.22" ; ccdsid "CCDS35113.1" ; exon_id "ENSE00001941941.1" ; exon_number 1 ; gene_id "RGS3--BRD3^RGS3^ENSG00000138835.22" ; gene_name RGS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021048.9" ; havana_transcript "OTTHUMT00000055562.1" ; hgnc_id "HGNC:9999" ; level 2 ; orig_coord_info "chr9,113463803,113463881,+" ; protein_id "ENSP00000312844.6" ; tag basic CCDS ; transcript_id "RGS3--BRD3^ENST00000317613.10" ; transcript_name "RGS3-201" ; transcript_support_level 2 ; transcript_type protein_coding
RGS3--BRD3 HAVANA mRNA 4788 28217 . + . FI_gene_label "RGS3^ENSG00000138835.22" ; ID "RGS3--BRD3^ENST00000317613.10" ; Parent "RGS3--BRD3^RGS3^ENSG00000138835.22" ; ccdsid "CCDS35113.1" ; exon_id "ENSE00001941941.1" ; exon_number 1 ; gene_id "RGS3--BRD3^RGS3^ENSG00000138835.22" ; gene_name RGS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021048.9" ; havana_transcript "OTTHUMT00000055562.1" ; hgnc_id "HGNC:9999" ; level 2 ; orig_coord_info "chr9,113463803,113463881,+" ; protein_id "ENSP00000312844.6" ; tag basic CCDS ; transcript_id "RGS3--BRD3^ENST00000317613.10" ; transcript_name "RGS3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RN7SKP13--TENM3 HAVANA gene 11150 13697 . + . FI_gene_label "TENM3^ENSG00000218336.9" ; ID "RN7SKP13--TENM3^TENM3^ENSG00000218336.9" ; exon_id "ENSE00002027713.1" ; exon_number 1 ; gene_id "RN7SKP13--TENM3^TENM3^ENSG00000218336.9" ; gene_name TENM3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160682.6" ; havana_transcript "OTTHUMT00000361738.2" ; hgnc_id "HGNC:29944" ; level 2 ; orig_coord_info "chr4,182448999,182449083,+" ; protein_id "ENSP00000426914.1" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "RN7SKP13--TENM3^ENST00000510504.1" ; transcript_name "TENM3-203" ; transcript_support_level 3 ; transcript_type protein_coding
RN7SKP13--TENM3 HAVANA mRNA 11150 13697 . + . FI_gene_label "TENM3^ENSG00000218336.9" ; ID "RN7SKP13--TENM3^ENST00000510504.1" ; Parent "RN7SKP13--TENM3^TENM3^ENSG00000218336.9" ; exon_id "ENSE00002027713.1" ; exon_number 1 ; gene_id "RN7SKP13--TENM3^TENM3^ENSG00000218336.9" ; gene_name TENM3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160682.6" ; havana_transcript "OTTHUMT00000361738.2" ; hgnc_id "HGNC:29944" ; level 2 ; orig_coord_info "chr4,182448999,182449083,+" ; protein_id "ENSP00000426914.1" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "RN7SKP13--TENM3^ENST00000510504.1" ; transcript_name "TENM3-203" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
ROR2--AC244669.2 HAVANA gene 1001 18483 . + . FI_gene_label "ROR2^ENSG00000169071.15" ; ID "ROR2--AC244669.2^ROR2^ENSG00000169071.15" ; ccdsid "CCDS6691.1" ; exon_id "ENSE00001468100.2" ; exon_number 1 ; gene_id "ROR2--AC244669.2^ROR2^ENSG00000169071.15" ; gene_name ROR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020211.5" ; havana_transcript "OTTHUMT00000053040.2" ; hgnc_id "HGNC:10257" ; level 2 ; orig_coord_info "chr9,91949867,91949963,-" ; protein_id "ENSP00000364860.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR2--AC244669.2^ENST00000375708.4" ; transcript_name "ROR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ROR2--AC244669.2 HAVANA mRNA 1001 18483 . + . FI_gene_label "ROR2^ENSG00000169071.15" ; ID "ROR2--AC244669.2^ENST00000375708.4" ; Parent "ROR2--AC244669.2^ROR2^ENSG00000169071.15" ; ccdsid "CCDS6691.1" ; exon_id "ENSE00001468100.2" ; exon_number 1 ; gene_id "ROR2--AC244669.2^ROR2^ENSG00000169071.15" ; gene_name ROR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020211.5" ; havana_transcript "OTTHUMT00000053040.2" ; hgnc_id "HGNC:10257" ; level 2 ; orig_coord_info "chr9,91949867,91949963,-" ; protein_id "ENSP00000364860.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR2--AC244669.2^ENST00000375708.4" ; transcript_name "ROR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--DIAPH3 HAVANA gene 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--DIAPH3^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--DIAPH3^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--DIAPH3^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--DIAPH3 HAVANA mRNA 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--DIAPH3^ENST00000225577.9" ; Parent "RPS6KB1--DIAPH3^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--DIAPH3^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--DIAPH3^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--DIAPH3 HAVANA gene 25159 55009 . + . FI_gene_label "DIAPH3^ENSG00000139734.19" ; ID "RPS6KB1--DIAPH3^DIAPH3^ENSG00000139734.19" ; ccdsid "CCDS58297.1" ; exon_id "ENSE00001251532.6" ; exon_number 1 ; gene_id "RPS6KB1--DIAPH3^DIAPH3^ENSG00000139734.19" ; gene_name DIAPH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017004.7" ; havana_transcript "OTTHUMT00000280483.1" ; hgnc_id "HGNC:15480" ; level 2 ; orig_coord_info "chr13,60163587,60163766,-" ; protein_id "ENSP00000267215.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "RPS6KB1--DIAPH3^ENST00000267215.8" ; transcript_name "DIAPH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--DIAPH3 HAVANA mRNA 25159 55009 . + . FI_gene_label "DIAPH3^ENSG00000139734.19" ; ID "RPS6KB1--DIAPH3^ENST00000267215.8" ; Parent "RPS6KB1--DIAPH3^DIAPH3^ENSG00000139734.19" ; ccdsid "CCDS58297.1" ; exon_id "ENSE00001251532.6" ; exon_number 1 ; gene_id "RPS6KB1--DIAPH3^DIAPH3^ENSG00000139734.19" ; gene_name DIAPH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017004.7" ; havana_transcript "OTTHUMT00000280483.1" ; hgnc_id "HGNC:15480" ; level 2 ; orig_coord_info "chr13,60163587,60163766,-" ; protein_id "ENSP00000267215.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "RPS6KB1--DIAPH3^ENST00000267215.8" ; transcript_name "DIAPH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--VMP1 HAVANA gene 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--VMP1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--VMP1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--VMP1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--VMP1 HAVANA mRNA 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--VMP1^ENST00000225577.9" ; Parent "RPS6KB1--VMP1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--VMP1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--VMP1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--VMP1 HAVANA gene 25459 44161 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "RPS6KB1--VMP1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "RPS6KB1--VMP1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS6KB1--VMP1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--VMP1 HAVANA mRNA 25459 44161 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "RPS6KB1--VMP1^ENST00000262291.9" ; Parent "RPS6KB1--VMP1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "RPS6KB1--VMP1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS6KB1--VMP1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RRM2--CYS1 HAVANA gene 2780 10336 . + . FI_gene_label "RRM2^ENSG00000171848.16" ; ID "RRM2--CYS1^RRM2^ENSG00000171848.16" ; ccdsid "CCDS1669.1" ; exon_id "ENSE00003814275.1" ; exon_number 1 ; gene_id "RRM2--CYS1^RRM2^ENSG00000171848.16" ; gene_name RRM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185555.7" ; havana_transcript "OTTHUMT00000364902.5" ; hgnc_id "HGNC:10452" ; level 2 ; orig_coord_info "chr2,10122799,10122897,+" ; protein_id "ENSP00000302955.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRM2--CYS1^ENST00000304567.10" ; transcript_name "RRM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RRM2--CYS1 HAVANA mRNA 2780 10336 . + . FI_gene_label "RRM2^ENSG00000171848.16" ; ID "RRM2--CYS1^ENST00000304567.10" ; Parent "RRM2--CYS1^RRM2^ENSG00000171848.16" ; ccdsid "CCDS1669.1" ; exon_id "ENSE00003814275.1" ; exon_number 1 ; gene_id "RRM2--CYS1^RRM2^ENSG00000171848.16" ; gene_name RRM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185555.7" ; havana_transcript "OTTHUMT00000364902.5" ; hgnc_id "HGNC:10452" ; level 2 ; orig_coord_info "chr2,10122799,10122897,+" ; protein_id "ENSP00000302955.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRM2--CYS1^ENST00000304567.10" ; transcript_name "RRM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RRM2--CYS1 HAVANA gene 23218 27955 . + . FI_gene_label "CYS1^ENSG00000205795.4" ; ID "RRM2--CYS1^CYS1^ENSG00000205795.4" ; ccdsid "CCDS33145.1" ; exon_id "ENSE00001489936.3" ; exon_number 1 ; gene_id "RRM2--CYS1^CYS1^ENSG00000205795.4" ; gene_name CYS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151703.1" ; havana_transcript "OTTHUMT00000323537.1" ; hgnc_id "HGNC:18525" ; level 2 ; orig_coord_info "chr2,10079906,10080223,-" ; protein_id "ENSP00000371234.4" ; tag basic appris_principal_1 CCDS ; transcript_id "RRM2--CYS1^ENST00000381813.4" ; transcript_name "CYS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RRM2--CYS1 HAVANA mRNA 23218 27955 . + . FI_gene_label "CYS1^ENSG00000205795.4" ; ID "RRM2--CYS1^ENST00000381813.4" ; Parent "RRM2--CYS1^CYS1^ENSG00000205795.4" ; ccdsid "CCDS33145.1" ; exon_id "ENSE00001489936.3" ; exon_number 1 ; gene_id "RRM2--CYS1^CYS1^ENSG00000205795.4" ; gene_name CYS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151703.1" ; havana_transcript "OTTHUMT00000323537.1" ; hgnc_id "HGNC:18525" ; level 2 ; orig_coord_info "chr2,10079906,10080223,-" ; protein_id "ENSP00000371234.4" ; tag basic appris_principal_1 CCDS ; transcript_id "RRM2--CYS1^ENST00000381813.4" ; transcript_name "CYS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RSBN1--AP4B1-AS1 HAVANA gene 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--AP4B1-AS1^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--AP4B1-AS1^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--AP4B1-AS1^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
RSBN1--AP4B1-AS1 HAVANA mRNA 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--AP4B1-AS1^ENST00000261441.9" ; Parent "RSBN1--AP4B1-AS1^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--AP4B1-AS1^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--AP4B1-AS1^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RSBN1--VAV3 HAVANA gene 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--VAV3^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--VAV3^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--VAV3^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
RSBN1--VAV3 HAVANA mRNA 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--VAV3^ENST00000261441.9" ; Parent "RSBN1--VAV3^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--VAV3^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--VAV3^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RSBN1--VAV3 HAVANA gene 16717 58598 . + . FI_gene_label "VAV3^ENSG00000134215.16" ; ID "RSBN1--VAV3^VAV3^ENSG00000134215.16" ; ccdsid "CCDS785.1" ; exon_id "ENSE00001894713.3" ; exon_number 1 ; gene_id "RSBN1--VAV3^VAV3^ENSG00000134215.16" ; gene_name VAV3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010995.5" ; havana_transcript "OTTHUMT00000030242.3" ; hgnc_id "HGNC:12659" ; level 2 ; orig_coord_info "chr1,107964666,107964869,-" ; protein_id "ENSP00000359073.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RSBN1--VAV3^ENST00000370056.9" ; transcript_name "VAV3-202" ; transcript_support_level 1 ; transcript_type protein_coding
RSBN1--VAV3 HAVANA mRNA 16717 58598 . + . FI_gene_label "VAV3^ENSG00000134215.16" ; ID "RSBN1--VAV3^ENST00000370056.9" ; Parent "RSBN1--VAV3^VAV3^ENSG00000134215.16" ; ccdsid "CCDS785.1" ; exon_id "ENSE00001894713.3" ; exon_number 1 ; gene_id "RSBN1--VAV3^VAV3^ENSG00000134215.16" ; gene_name VAV3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010995.5" ; havana_transcript "OTTHUMT00000030242.3" ; hgnc_id "HGNC:12659" ; level 2 ; orig_coord_info "chr1,107964666,107964869,-" ; protein_id "ENSP00000359073.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RSBN1--VAV3^ENST00000370056.9" ; transcript_name "VAV3-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SARNP--GSTP1P1 HAVANA gene 1001 12630 . + . FI_gene_label "SARNP^ENSG00000205323.9" ; ID "SARNP--GSTP1P1^SARNP^ENSG00000205323.9" ; ccdsid "CCDS8892.1" ; exon_id "ENSE00002400242.1" ; exon_number 1 ; gene_id "SARNP--GSTP1P1^SARNP^ENSG00000205323.9" ; gene_name SARNP ; gene_type protein_coding ; havana_gene "OTTHUMG00000170441.4" ; havana_transcript "OTTHUMT00000409159.3" ; hgnc_id "HGNC:24432" ; level 2 ; orig_coord_info "chr12,55817666,55817701,-" ; protein_id "ENSP00000337632.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--GSTP1P1^ENST00000336133.8" ; transcript_name "SARNP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SARNP--GSTP1P1 HAVANA mRNA 1001 12630 . + . FI_gene_label "SARNP^ENSG00000205323.9" ; ID "SARNP--GSTP1P1^ENST00000336133.8" ; Parent "SARNP--GSTP1P1^SARNP^ENSG00000205323.9" ; ccdsid "CCDS8892.1" ; exon_id "ENSE00002400242.1" ; exon_number 1 ; gene_id "SARNP--GSTP1P1^SARNP^ENSG00000205323.9" ; gene_name SARNP ; gene_type protein_coding ; havana_gene "OTTHUMG00000170441.4" ; havana_transcript "OTTHUMT00000409159.3" ; hgnc_id "HGNC:24432" ; level 2 ; orig_coord_info "chr12,55817666,55817701,-" ; protein_id "ENSP00000337632.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--GSTP1P1^ENST00000336133.8" ; transcript_name "SARNP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SARNP--OLA1P3 HAVANA gene 1001 12630 . + . FI_gene_label "SARNP^ENSG00000205323.9" ; ID "SARNP--OLA1P3^SARNP^ENSG00000205323.9" ; ccdsid "CCDS8892.1" ; exon_id "ENSE00002400242.1" ; exon_number 1 ; gene_id "SARNP--OLA1P3^SARNP^ENSG00000205323.9" ; gene_name SARNP ; gene_type protein_coding ; havana_gene "OTTHUMG00000170441.4" ; havana_transcript "OTTHUMT00000409159.3" ; hgnc_id "HGNC:24432" ; level 2 ; orig_coord_info "chr12,55817666,55817701,-" ; protein_id "ENSP00000337632.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--OLA1P3^ENST00000336133.8" ; transcript_name "SARNP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SARNP--OLA1P3 HAVANA mRNA 1001 12630 . + . FI_gene_label "SARNP^ENSG00000205323.9" ; ID "SARNP--OLA1P3^ENST00000336133.8" ; Parent "SARNP--OLA1P3^SARNP^ENSG00000205323.9" ; ccdsid "CCDS8892.1" ; exon_id "ENSE00002400242.1" ; exon_number 1 ; gene_id "SARNP--OLA1P3^SARNP^ENSG00000205323.9" ; gene_name SARNP ; gene_type protein_coding ; havana_gene "OTTHUMG00000170441.4" ; havana_transcript "OTTHUMT00000409159.3" ; hgnc_id "HGNC:24432" ; level 2 ; orig_coord_info "chr12,55817666,55817701,-" ; protein_id "ENSP00000337632.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--OLA1P3^ENST00000336133.8" ; transcript_name "SARNP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SHISA9--AC010333.1 HAVANA gene 1160 6577 . + . FI_gene_label "SHISA9^ENSG00000237515.9" ; ID "SHISA9--AC010333.1^SHISA9^ENSG00000237515.9" ; ccdsid "CCDS45418.2" ; exon_id "ENSE00001691364.2" ; exon_number 1 ; gene_id "SHISA9--AC010333.1^SHISA9^ENSG00000237515.9" ; gene_name SHISA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154258.9" ; havana_transcript "OTTHUMT00000334571.3" ; hgnc_id "HGNC:37231" ; level 2 ; orig_coord_info "chr16,12902065,12902627,+" ; protein_id "ENSP00000395245.2" ; tag basic CCDS ; transcript_id "SHISA9--AC010333.1^ENST00000423335.2" ; transcript_name "SHISA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
SHISA9--AC010333.1 HAVANA mRNA 1160 6577 . + . FI_gene_label "SHISA9^ENSG00000237515.9" ; ID "SHISA9--AC010333.1^ENST00000423335.2" ; Parent "SHISA9--AC010333.1^SHISA9^ENSG00000237515.9" ; ccdsid "CCDS45418.2" ; exon_id "ENSE00001691364.2" ; exon_number 1 ; gene_id "SHISA9--AC010333.1^SHISA9^ENSG00000237515.9" ; gene_name SHISA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154258.9" ; havana_transcript "OTTHUMT00000334571.3" ; hgnc_id "HGNC:37231" ; level 2 ; orig_coord_info "chr16,12902065,12902627,+" ; protein_id "ENSP00000395245.2" ; tag basic CCDS ; transcript_id "SHISA9--AC010333.1^ENST00000423335.2" ; transcript_name "SHISA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SHISA9--AC010333.2 HAVANA gene 1160 6577 . + . FI_gene_label "SHISA9^ENSG00000237515.9" ; ID "SHISA9--AC010333.2^SHISA9^ENSG00000237515.9" ; ccdsid "CCDS45418.2" ; exon_id "ENSE00001691364.2" ; exon_number 1 ; gene_id "SHISA9--AC010333.2^SHISA9^ENSG00000237515.9" ; gene_name SHISA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154258.9" ; havana_transcript "OTTHUMT00000334571.3" ; hgnc_id "HGNC:37231" ; level 2 ; orig_coord_info "chr16,12902065,12902627,+" ; protein_id "ENSP00000395245.2" ; tag basic CCDS ; transcript_id "SHISA9--AC010333.2^ENST00000423335.2" ; transcript_name "SHISA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
SHISA9--AC010333.2 HAVANA mRNA 1160 6577 . + . FI_gene_label "SHISA9^ENSG00000237515.9" ; ID "SHISA9--AC010333.2^ENST00000423335.2" ; Parent "SHISA9--AC010333.2^SHISA9^ENSG00000237515.9" ; ccdsid "CCDS45418.2" ; exon_id "ENSE00001691364.2" ; exon_number 1 ; gene_id "SHISA9--AC010333.2^SHISA9^ENSG00000237515.9" ; gene_name SHISA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154258.9" ; havana_transcript "OTTHUMT00000334571.3" ; hgnc_id "HGNC:37231" ; level 2 ; orig_coord_info "chr16,12902065,12902627,+" ; protein_id "ENSP00000395245.2" ; tag basic CCDS ; transcript_id "SHISA9--AC010333.2^ENST00000423335.2" ; transcript_name "SHISA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC25A19--RNU7-6P HAVANA gene 1078 9008 . + . FI_gene_label "SLC25A19^ENSG00000125454.12" ; ID "SLC25A19--RNU7-6P^SLC25A19^ENSG00000125454.12" ; ccdsid "CCDS11720.1" ; exon_id "ENSE00001241203.3" ; exon_number 4 ; gene_id "SLC25A19--RNU7-6P^SLC25A19^ENSG00000125454.12" ; gene_name SLC25A19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179607.4" ; havana_transcript "OTTHUMT00000447284.1" ; hgnc_id "HGNC:14409" ; level 2 ; orig_coord_info "chr17,75286633,75286764,-" ; protein_id "ENSP00000319574.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLC25A19--RNU7-6P^ENST00000320362.7" ; transcript_name "SLC25A19-201" ; transcript_support_level 2 ; transcript_type protein_coding
SLC25A19--RNU7-6P HAVANA mRNA 1078 9008 . + . FI_gene_label "SLC25A19^ENSG00000125454.12" ; ID "SLC25A19--RNU7-6P^ENST00000320362.7" ; Parent "SLC25A19--RNU7-6P^SLC25A19^ENSG00000125454.12" ; ccdsid "CCDS11720.1" ; exon_id "ENSE00001241203.3" ; exon_number 4 ; gene_id "SLC25A19--RNU7-6P^SLC25A19^ENSG00000125454.12" ; gene_name SLC25A19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179607.4" ; havana_transcript "OTTHUMT00000447284.1" ; hgnc_id "HGNC:14409" ; level 2 ; orig_coord_info "chr17,75286633,75286764,-" ; protein_id "ENSP00000319574.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLC25A19--RNU7-6P^ENST00000320362.7" ; transcript_name "SLC25A19-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SLC25A19--ZFP64 HAVANA gene 13134 22301 . + . FI_gene_label "ZFP64^ENSG00000020256.20" ; ID "SLC25A19--ZFP64^ZFP64^ENSG00000020256.20" ; ccdsid "CCDS13440.1" ; exon_id "ENSE00001455426.1" ; exon_number 1 ; gene_id "SLC25A19--ZFP64^ZFP64^ENSG00000020256.20" ; gene_name ZFP64 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032756.3" ; havana_transcript "OTTHUMT00000079744.1" ; hgnc_id "HGNC:15940" ; level 2 ; orig_coord_info "chr20,52191591,52191636,-" ; protein_id "ENSP00000216923.4" ; tag basic MANE_Select CCDS ; transcript_id "SLC25A19--ZFP64^ENST00000216923.5" ; transcript_name "ZFP64-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC25A19--ZFP64 HAVANA mRNA 13134 22301 . + . FI_gene_label "ZFP64^ENSG00000020256.20" ; ID "SLC25A19--ZFP64^ENST00000216923.5" ; Parent "SLC25A19--ZFP64^ZFP64^ENSG00000020256.20" ; ccdsid "CCDS13440.1" ; exon_id "ENSE00001455426.1" ; exon_number 1 ; gene_id "SLC25A19--ZFP64^ZFP64^ENSG00000020256.20" ; gene_name ZFP64 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032756.3" ; havana_transcript "OTTHUMT00000079744.1" ; hgnc_id "HGNC:15940" ; level 2 ; orig_coord_info "chr20,52191591,52191636,-" ; protein_id "ENSP00000216923.4" ; tag basic MANE_Select CCDS ; transcript_id "SLC25A19--ZFP64^ENST00000216923.5" ; transcript_name "ZFP64-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC25A19--ZFP64 HAVANA gene 1078 9008 . + . FI_gene_label "SLC25A19^ENSG00000125454.12" ; ID "SLC25A19--ZFP64^SLC25A19^ENSG00000125454.12" ; ccdsid "CCDS11720.1" ; exon_id "ENSE00001241203.3" ; exon_number 4 ; gene_id "SLC25A19--ZFP64^SLC25A19^ENSG00000125454.12" ; gene_name SLC25A19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179607.4" ; havana_transcript "OTTHUMT00000447284.1" ; hgnc_id "HGNC:14409" ; level 2 ; orig_coord_info "chr17,75286633,75286764,-" ; protein_id "ENSP00000319574.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLC25A19--ZFP64^ENST00000320362.7" ; transcript_name "SLC25A19-201" ; transcript_support_level 2 ; transcript_type protein_coding
SLC25A19--ZFP64 HAVANA mRNA 1078 9008 . + . FI_gene_label "SLC25A19^ENSG00000125454.12" ; ID "SLC25A19--ZFP64^ENST00000320362.7" ; Parent "SLC25A19--ZFP64^SLC25A19^ENSG00000125454.12" ; ccdsid "CCDS11720.1" ; exon_id "ENSE00001241203.3" ; exon_number 4 ; gene_id "SLC25A19--ZFP64^SLC25A19^ENSG00000125454.12" ; gene_name SLC25A19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179607.4" ; havana_transcript "OTTHUMT00000447284.1" ; hgnc_id "HGNC:14409" ; level 2 ; orig_coord_info "chr17,75286633,75286764,-" ; protein_id "ENSP00000319574.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLC25A19--ZFP64^ENST00000320362.7" ; transcript_name "SLC25A19-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SLC25A24--SARS1 HAVANA gene 21303 31712 . + . FI_gene_label "SARS1^ENSG00000031698.13" ; ID "SLC25A24--SARS1^SARS1^ENSG00000031698.13" ; ccdsid "CCDS795.1" ; exon_id "ENSE00001068258.4" ; exon_number 1 ; gene_id "SLC25A24--SARS1^SARS1^ENSG00000031698.13" ; gene_name SARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011726.4" ; havana_transcript "OTTHUMT00000032394.3" ; hgnc_id "HGNC:10537" ; level 2 ; orig_coord_info "chr1,109213993,109214128,+" ; protein_id "ENSP00000234677.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC25A24--SARS1^ENST00000234677.7" ; transcript_name "SARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC25A24--SARS1 HAVANA mRNA 21303 31712 . + . FI_gene_label "SARS1^ENSG00000031698.13" ; ID "SLC25A24--SARS1^ENST00000234677.7" ; Parent "SLC25A24--SARS1^SARS1^ENSG00000031698.13" ; ccdsid "CCDS795.1" ; exon_id "ENSE00001068258.4" ; exon_number 1 ; gene_id "SLC25A24--SARS1^SARS1^ENSG00000031698.13" ; gene_name SARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011726.4" ; havana_transcript "OTTHUMT00000032394.3" ; hgnc_id "HGNC:10537" ; level 2 ; orig_coord_info "chr1,109213993,109214128,+" ; protein_id "ENSP00000234677.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC25A24--SARS1^ENST00000234677.7" ; transcript_name "SARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC25A24--SARS1 HAVANA gene 1571 17525 . + . FI_gene_label "SLC25A24^ENSG00000085491.17" ; ID "SLC25A24--SARS1^SLC25A24^ENSG00000085491.17" ; exon_id "ENSE00001255766.9" ; exon_number 1 ; gene_id "SLC25A24--SARS1^SLC25A24^ENSG00000085491.17" ; gene_name SLC25A24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011013.8" ; havana_transcript "OTTHUMT00000421199.1" ; hgnc_id "HGNC:20662" ; level 2 ; orig_coord_info "chr1,108199956,108200138,-" ; protein_id "ENSP00000264128.9" ; transcript_id "SLC25A24--SARS1^ENST00000264128.13" ; transcript_name "SLC25A24-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
SLC25A24--SARS1 HAVANA mRNA 1571 17525 . + . FI_gene_label "SLC25A24^ENSG00000085491.17" ; ID "SLC25A24--SARS1^ENST00000264128.13" ; Parent "SLC25A24--SARS1^SLC25A24^ENSG00000085491.17" ; exon_id "ENSE00001255766.9" ; exon_number 1 ; gene_id "SLC25A24--SARS1^SLC25A24^ENSG00000085491.17" ; gene_name SLC25A24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011013.8" ; havana_transcript "OTTHUMT00000421199.1" ; hgnc_id "HGNC:20662" ; level 2 ; orig_coord_info "chr1,108199956,108200138,-" ; protein_id "ENSP00000264128.9" ; transcript_id "SLC25A24--SARS1^ENST00000264128.13" ; transcript_name "SLC25A24-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
SLC5A4P1--OR8A1 HAVANA gene 5658 7035 . + . FI_gene_label "OR8A1^ENSG00000196119.8" ; ID "SLC5A4P1--OR8A1^OR8A1^ENSG00000196119.8" ; exon_id "ENSE00001014261.5" ; exon_number 1 ; gene_id "SLC5A4P1--OR8A1^OR8A1^ENSG00000196119.8" ; gene_name OR8A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165923.3" ; havana_transcript "OTTHUMT00000387062.3" ; hgnc_id "HGNC:8469" ; level 2 ; orig_coord_info "chr11,124570120,124571046,+" ; protein_id "ENSP00000284287.4" ; tag basic MANE_Select appris_principal_1 ; transcript_id "SLC5A4P1--OR8A1^ENST00000284287.6" ; transcript_name "OR8A1-201" ; transcript_support_level NA ; transcript_type protein_coding
SLC5A4P1--OR8A1 HAVANA mRNA 5658 7035 . + . FI_gene_label "OR8A1^ENSG00000196119.8" ; ID "SLC5A4P1--OR8A1^ENST00000284287.6" ; Parent "SLC5A4P1--OR8A1^OR8A1^ENSG00000196119.8" ; exon_id "ENSE00001014261.5" ; exon_number 1 ; gene_id "SLC5A4P1--OR8A1^OR8A1^ENSG00000196119.8" ; gene_name OR8A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165923.3" ; havana_transcript "OTTHUMT00000387062.3" ; hgnc_id "HGNC:8469" ; level 2 ; orig_coord_info "chr11,124570120,124571046,+" ; protein_id "ENSP00000284287.4" ; tag basic MANE_Select appris_principal_1 ; transcript_id "SLC5A4P1--OR8A1^ENST00000284287.6" ; transcript_name "OR8A1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
SMARCA4--CARM1 HAVANA gene 53126 65540 . + . FI_gene_label "CARM1^ENSG00000142453.12" ; ID "SMARCA4--CARM1^CARM1^ENSG00000142453.12" ; ccdsid "CCDS12250.1" ; exon_id "ENSE00002890317.2" ; exon_number 1 ; gene_id "SMARCA4--CARM1^CARM1^ENSG00000142453.12" ; gene_name CARM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180699.3" ; havana_transcript "OTTHUMT00000452625.2" ; hgnc_id "HGNC:23393" ; level 2 ; orig_coord_info "chr19,10871703,10871922,+" ; protein_id "ENSP00000325690.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SMARCA4--CARM1^ENST00000327064.9" ; transcript_name "CARM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMARCA4--CARM1 HAVANA mRNA 53126 65540 . + . FI_gene_label "CARM1^ENSG00000142453.12" ; ID "SMARCA4--CARM1^ENST00000327064.9" ; Parent "SMARCA4--CARM1^CARM1^ENSG00000142453.12" ; ccdsid "CCDS12250.1" ; exon_id "ENSE00002890317.2" ; exon_number 1 ; gene_id "SMARCA4--CARM1^CARM1^ENSG00000142453.12" ; gene_name CARM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180699.3" ; havana_transcript "OTTHUMT00000452625.2" ; hgnc_id "HGNC:23393" ; level 2 ; orig_coord_info "chr19,10871703,10871922,+" ; protein_id "ENSP00000325690.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SMARCA4--CARM1^ENST00000327064.9" ; transcript_name "CARM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMARCA4--CARM1 HAVANA gene 1099 46570 . + . FI_gene_label "SMARCA4^ENSG00000127616.19" ; ID "SMARCA4--CARM1^SMARCA4^ENSG00000127616.19" ; ccdsid "CCDS12253.1" ; exon_id "ENSE00000874191.1" ; exon_number 2 ; gene_id "SMARCA4--CARM1^SMARCA4^ENSG00000127616.19" ; gene_name SMARCA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169272.16" ; havana_transcript "OTTHUMT00000403235.3" ; hgnc_id "HGNC:11100" ; level 2 ; orig_coord_info "chr19,10984152,10984373,+" ; protein_id "ENSP00000343896.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMARCA4--CARM1^ENST00000344626.10" ; transcript_name "SMARCA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMARCA4--CARM1 HAVANA mRNA 1099 46570 . + . FI_gene_label "SMARCA4^ENSG00000127616.19" ; ID "SMARCA4--CARM1^ENST00000344626.10" ; Parent "SMARCA4--CARM1^SMARCA4^ENSG00000127616.19" ; ccdsid "CCDS12253.1" ; exon_id "ENSE00000874191.1" ; exon_number 2 ; gene_id "SMARCA4--CARM1^SMARCA4^ENSG00000127616.19" ; gene_name SMARCA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169272.16" ; havana_transcript "OTTHUMT00000403235.3" ; hgnc_id "HGNC:11100" ; level 2 ; orig_coord_info "chr19,10984152,10984373,+" ; protein_id "ENSP00000343896.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMARCA4--CARM1^ENST00000344626.10" ; transcript_name "SMARCA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMARCC1--EMCN HAVANA gene 1214 35835 . + . FI_gene_label "SMARCC1^ENSG00000173473.11" ; ID "SMARCC1--EMCN^SMARCC1^ENSG00000173473.11" ; ccdsid "CCDS2758.1" ; exon_id "ENSE00001294910.6" ; exon_number 1 ; gene_id "SMARCC1--EMCN^SMARCC1^ENSG00000173473.11" ; gene_name SMARCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133519.3" ; havana_transcript "OTTHUMT00000257491.2" ; hgnc_id "HGNC:11104" ; level 2 ; orig_coord_info "chr3,47781603,47781797,-" ; protein_id "ENSP00000254480.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMARCC1--EMCN^ENST00000254480.10" ; transcript_name "SMARCC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMARCC1--EMCN HAVANA mRNA 1214 35835 . + . FI_gene_label "SMARCC1^ENSG00000173473.11" ; ID "SMARCC1--EMCN^ENST00000254480.10" ; Parent "SMARCC1--EMCN^SMARCC1^ENSG00000173473.11" ; ccdsid "CCDS2758.1" ; exon_id "ENSE00001294910.6" ; exon_number 1 ; gene_id "SMARCC1--EMCN^SMARCC1^ENSG00000173473.11" ; gene_name SMARCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133519.3" ; havana_transcript "OTTHUMT00000257491.2" ; hgnc_id "HGNC:11104" ; level 2 ; orig_coord_info "chr3,47781603,47781797,-" ; protein_id "ENSP00000254480.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMARCC1--EMCN^ENST00000254480.10" ; transcript_name "SMARCC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMARCC1--EMCN HAVANA gene 44339 63197 . + . FI_gene_label "EMCN^ENSG00000164035.10" ; ID "SMARCC1--EMCN^EMCN^ENSG00000164035.10" ; ccdsid "CCDS3655.1" ; exon_id "ENSE00001899740.2" ; exon_number 1 ; gene_id "SMARCC1--EMCN^EMCN^ENSG00000164035.10" ; gene_name EMCN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131051.7" ; havana_transcript "OTTHUMT00000253699.3" ; hgnc_id "HGNC:16041" ; level 2 ; orig_coord_info "chr4,100517851,100517914,-" ; protein_id "ENSP00000296420.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMARCC1--EMCN^ENST00000296420.9" ; transcript_name "EMCN-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMARCC1--EMCN HAVANA mRNA 44339 63197 . + . FI_gene_label "EMCN^ENSG00000164035.10" ; ID "SMARCC1--EMCN^ENST00000296420.9" ; Parent "SMARCC1--EMCN^EMCN^ENSG00000164035.10" ; ccdsid "CCDS3655.1" ; exon_id "ENSE00001899740.2" ; exon_number 1 ; gene_id "SMARCC1--EMCN^EMCN^ENSG00000164035.10" ; gene_name EMCN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131051.7" ; havana_transcript "OTTHUMT00000253699.3" ; hgnc_id "HGNC:16041" ; level 2 ; orig_coord_info "chr4,100517851,100517914,-" ; protein_id "ENSP00000296420.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMARCC1--EMCN^ENST00000296420.9" ; transcript_name "EMCN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPTLC1--AL445231.1 HAVANA gene 1001 22240 . + . FI_gene_label "SPTLC1^ENSG00000090054.15" ; ID "SPTLC1--AL445231.1^SPTLC1^ENSG00000090054.15" ; ccdsid "CCDS6692.1" ; exon_id "ENSE00001844829.2" ; exon_number 1 ; gene_id "SPTLC1--AL445231.1^SPTLC1^ENSG00000090054.15" ; gene_name SPTLC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021047.3" ; havana_transcript "OTTHUMT00000055553.3" ; hgnc_id "HGNC:11277" ; level 2 ; orig_coord_info "chr9,92115314,92115370,-" ; protein_id "ENSP00000262554.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPTLC1--AL445231.1^ENST00000262554.7" ; transcript_name "SPTLC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SPTLC1--AL445231.1 HAVANA mRNA 1001 22240 . + . FI_gene_label "SPTLC1^ENSG00000090054.15" ; ID "SPTLC1--AL445231.1^ENST00000262554.7" ; Parent "SPTLC1--AL445231.1^SPTLC1^ENSG00000090054.15" ; ccdsid "CCDS6692.1" ; exon_id "ENSE00001844829.2" ; exon_number 1 ; gene_id "SPTLC1--AL445231.1^SPTLC1^ENSG00000090054.15" ; gene_name SPTLC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021047.3" ; havana_transcript "OTTHUMT00000055553.3" ; hgnc_id "HGNC:11277" ; level 2 ; orig_coord_info "chr9,92115314,92115370,-" ; protein_id "ENSP00000262554.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPTLC1--AL445231.1^ENST00000262554.7" ; transcript_name "SPTLC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SULF2--PRICKLE2 HAVANA gene 28697 52384 . + . FI_gene_label "PRICKLE2^ENSG00000163637.13" ; ID "SULF2--PRICKLE2^PRICKLE2^ENSG00000163637.13" ; exon_id "ENSE00002621803.2" ; exon_number 1 ; gene_id "SULF2--PRICKLE2^PRICKLE2^ENSG00000163637.13" ; gene_name PRICKLE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158789.6" ; havana_transcript "OTTHUMT00000431928.2" ; hgnc_id "HGNC:20340" ; level 2 ; orig_coord_info "chr3,64445331,64445372,-" ; protein_id "ENSP00000295902.7" ; tag dotter_confirmed not_organism_supported basic appris_principal_1 ; transcript_id "SULF2--PRICKLE2^ENST00000295902.11" ; transcript_name "PRICKLE2-201" ; transcript_support_level 5 ; transcript_type protein_coding
SULF2--PRICKLE2 HAVANA mRNA 28697 52384 . + . FI_gene_label "PRICKLE2^ENSG00000163637.13" ; ID "SULF2--PRICKLE2^ENST00000295902.11" ; Parent "SULF2--PRICKLE2^PRICKLE2^ENSG00000163637.13" ; exon_id "ENSE00002621803.2" ; exon_number 1 ; gene_id "SULF2--PRICKLE2^PRICKLE2^ENSG00000163637.13" ; gene_name PRICKLE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158789.6" ; havana_transcript "OTTHUMT00000431928.2" ; hgnc_id "HGNC:20340" ; level 2 ; orig_coord_info "chr3,64445331,64445372,-" ; protein_id "ENSP00000295902.7" ; tag dotter_confirmed not_organism_supported basic appris_principal_1 ; transcript_id "SULF2--PRICKLE2^ENST00000295902.11" ; transcript_name "PRICKLE2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SULF2--PRICKLE2 HAVANA gene 1031 25063 . + . FI_gene_label "SULF2^ENSG00000196562.14" ; ID "SULF2--PRICKLE2^SULF2^ENSG00000196562.14" ; ccdsid "CCDS13408.1" ; exon_id "ENSE00003553626.1" ; exon_number 2 ; gene_id "SULF2--PRICKLE2^SULF2^ENSG00000196562.14" ; gene_name SULF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032675.9" ; havana_transcript "OTTHUMT00000079606.1" ; hgnc_id "HGNC:20392" ; level 2 ; orig_coord_info "chr20,47757189,47757363,-" ; protein_id "ENSP00000353007.4" ; tag basic appris_principal_4 CCDS ; transcript_id "SULF2--PRICKLE2^ENST00000359930.8" ; transcript_name "SULF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SULF2--PRICKLE2 HAVANA mRNA 1031 25063 . + . FI_gene_label "SULF2^ENSG00000196562.14" ; ID "SULF2--PRICKLE2^ENST00000359930.8" ; Parent "SULF2--PRICKLE2^SULF2^ENSG00000196562.14" ; ccdsid "CCDS13408.1" ; exon_id "ENSE00003553626.1" ; exon_number 2 ; gene_id "SULF2--PRICKLE2^SULF2^ENSG00000196562.14" ; gene_name SULF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032675.9" ; havana_transcript "OTTHUMT00000079606.1" ; hgnc_id "HGNC:20392" ; level 2 ; orig_coord_info "chr20,47757189,47757363,-" ; protein_id "ENSP00000353007.4" ; tag basic appris_principal_4 CCDS ; transcript_id "SULF2--PRICKLE2^ENST00000359930.8" ; transcript_name "SULF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SULT1A3--SLX1A HAVANA gene 9084 12686 . + . FI_gene_label "SLX1A^ENSG00000132207.18" ; ID "SULT1A3--SLX1A^SLX1A^ENSG00000132207.18" ; ccdsid "CCDS32431.1" ; exon_id "ENSE00001866597.2" ; exon_number 1 ; gene_id "SULT1A3--SLX1A^SLX1A^ENSG00000132207.18" ; gene_name SLX1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000176859.1" ; havana_transcript "OTTHUMT00000109418.1" ; hgnc_id "HGNC:20922" ; level 2 ; orig_coord_info "chr16,30194085,30194272,+" ; protein_id "ENSP00000251303.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SULT1A3--SLX1A^ENST00000251303.11" ; transcript_name "SLX1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
SULT1A3--SLX1A HAVANA mRNA 9084 12686 . + . FI_gene_label "SLX1A^ENSG00000132207.18" ; ID "SULT1A3--SLX1A^ENST00000251303.11" ; Parent "SULT1A3--SLX1A^SLX1A^ENSG00000132207.18" ; ccdsid "CCDS32431.1" ; exon_id "ENSE00001866597.2" ; exon_number 1 ; gene_id "SULT1A3--SLX1A^SLX1A^ENSG00000132207.18" ; gene_name SLX1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000176859.1" ; havana_transcript "OTTHUMT00000109418.1" ; hgnc_id "HGNC:20922" ; level 2 ; orig_coord_info "chr16,30194085,30194272,+" ; protein_id "ENSP00000251303.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SULT1A3--SLX1A^ENST00000251303.11" ; transcript_name "SLX1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SULT1A3--SLX1A HAVANA gene 1028 6083 . + . FI_gene_label "SULT1A3^ENSG00000261052.6" ; ID "SULT1A3--SLX1A^SULT1A3^ENSG00000261052.6" ; ccdsid "CCDS10674.1" ; exon_id "ENSE00003742981.1" ; exon_number 2 ; gene_id "SULT1A3--SLX1A^SULT1A3^ENSG00000261052.6" ; gene_name SULT1A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048083.3" ; havana_transcript "OTTHUMT00000434094.1" ; hgnc_id "HGNC:11455" ; level 2 ; orig_coord_info "chr16,30200729,30200876,+" ; protein_id "ENSP00000343645.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SULT1A3--SLX1A^ENST00000338971.10" ; transcript_name "SULT1A3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SULT1A3--SLX1A HAVANA mRNA 1028 6083 . + . FI_gene_label "SULT1A3^ENSG00000261052.6" ; ID "SULT1A3--SLX1A^ENST00000338971.10" ; Parent "SULT1A3--SLX1A^SULT1A3^ENSG00000261052.6" ; ccdsid "CCDS10674.1" ; exon_id "ENSE00003742981.1" ; exon_number 2 ; gene_id "SULT1A3--SLX1A^SULT1A3^ENSG00000261052.6" ; gene_name SULT1A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048083.3" ; havana_transcript "OTTHUMT00000434094.1" ; hgnc_id "HGNC:11455" ; level 2 ; orig_coord_info "chr16,30200729,30200876,+" ; protein_id "ENSP00000343645.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SULT1A3--SLX1A^ENST00000338971.10" ; transcript_name "SULT1A3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAF4--BRIP1 HAVANA gene 1001 23695 . + . FI_gene_label "TAF4^ENSG00000130699.18" ; ID "TAF4--BRIP1^TAF4^ENSG00000130699.18" ; ccdsid "CCDS33500.1" ; exon_id "ENSE00001379037.1" ; exon_number 1 ; gene_id "TAF4--BRIP1^TAF4^ENSG00000130699.18" ; gene_name TAF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032893.9" ; havana_transcript "OTTHUMT00000079968.2" ; hgnc_id "HGNC:11537" ; level 2 ; orig_coord_info "chr20,62064451,62065810,-" ; protein_id "ENSP00000252996.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TAF4--BRIP1^ENST00000252996.8" ; transcript_name "TAF4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAF4--BRIP1 HAVANA mRNA 1001 23695 . + . FI_gene_label "TAF4^ENSG00000130699.18" ; ID "TAF4--BRIP1^ENST00000252996.8" ; Parent "TAF4--BRIP1^TAF4^ENSG00000130699.18" ; ccdsid "CCDS33500.1" ; exon_id "ENSE00001379037.1" ; exon_number 1 ; gene_id "TAF4--BRIP1^TAF4^ENSG00000130699.18" ; gene_name TAF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032893.9" ; havana_transcript "OTTHUMT00000079968.2" ; hgnc_id "HGNC:11537" ; level 2 ; orig_coord_info "chr20,62064451,62065810,-" ; protein_id "ENSP00000252996.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TAF4--BRIP1^ENST00000252996.8" ; transcript_name "TAF4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAF4--BRIP1 HAVANA gene 28056 58204 . + . FI_gene_label "BRIP1^ENSG00000136492.9" ; ID "TAF4--BRIP1^BRIP1^ENSG00000136492.9" ; ccdsid "CCDS11631.1" ; exon_id "ENSE00001243809.3" ; exon_number 2 ; gene_id "TAF4--BRIP1^BRIP1^ENSG00000136492.9" ; gene_name BRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179233.3" ; havana_transcript "OTTHUMT00000445362.2" ; hgnc_id "HGNC:20473" ; level 2 ; orig_coord_info "chr17,61861447,61861539,-" ; protein_id "ENSP00000259008.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TAF4--BRIP1^ENST00000259008.7" ; transcript_name "BRIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAF4--BRIP1 HAVANA mRNA 28056 58204 . + . FI_gene_label "BRIP1^ENSG00000136492.9" ; ID "TAF4--BRIP1^ENST00000259008.7" ; Parent "TAF4--BRIP1^BRIP1^ENSG00000136492.9" ; ccdsid "CCDS11631.1" ; exon_id "ENSE00001243809.3" ; exon_number 2 ; gene_id "TAF4--BRIP1^BRIP1^ENSG00000136492.9" ; gene_name BRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179233.3" ; havana_transcript "OTTHUMT00000445362.2" ; hgnc_id "HGNC:20473" ; level 2 ; orig_coord_info "chr17,61861447,61861539,-" ; protein_id "ENSP00000259008.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TAF4--BRIP1^ENST00000259008.7" ; transcript_name "BRIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TANC2--CA4 HAVANA gene 50667 56915 . + . FI_gene_label "CA4^ENSG00000167434.10" ; ID "TANC2--CA4^CA4^ENSG00000167434.10" ; ccdsid "CCDS11624.1" ; exon_id "ENSE00002807999.2" ; exon_number 1 ; gene_id "TANC2--CA4^CA4^ENSG00000167434.10" ; gene_name CA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179987.4" ; havana_transcript "OTTHUMT00000449189.2" ; hgnc_id "HGNC:1375" ; level 2 ; orig_coord_info "chr17,60150035,60150092,+" ; protein_id "ENSP00000300900.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TANC2--CA4^ENST00000300900.9" ; transcript_name "CA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TANC2--CA4 HAVANA mRNA 50667 56915 . + . FI_gene_label "CA4^ENSG00000167434.10" ; ID "TANC2--CA4^ENST00000300900.9" ; Parent "TANC2--CA4^CA4^ENSG00000167434.10" ; ccdsid "CCDS11624.1" ; exon_id "ENSE00002807999.2" ; exon_number 1 ; gene_id "TANC2--CA4^CA4^ENSG00000167434.10" ; gene_name CA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179987.4" ; havana_transcript "OTTHUMT00000449189.2" ; hgnc_id "HGNC:1375" ; level 2 ; orig_coord_info "chr17,60150035,60150092,+" ; protein_id "ENSP00000300900.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TANC2--CA4^ENST00000300900.9" ; transcript_name "CA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TANC2--CA4 HAVANA gene 1005 42292 . + . FI_gene_label "TANC2^ENSG00000170921.15" ; ID "TANC2--CA4^TANC2^ENSG00000170921.15" ; exon_id "ENSE00002709640.1" ; exon_number 1 ; gene_id "TANC2--CA4^TANC2^ENSG00000170921.15" ; gene_name TANC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179103.2" ; havana_transcript "OTTHUMT00000444766.1" ; hgnc_id "HGNC:30212" ; level 2 ; orig_coord_info "chr17,63009560,63009626,+" ; protein_id "ENSP00000374171.4" ; tag basic appris_alternative_2 ; transcript_id "TANC2--CA4^ENST00000389520.8" ; transcript_name "TANC2-201" ; transcript_support_level 5 ; transcript_type protein_coding
TANC2--CA4 HAVANA mRNA 1005 42292 . + . FI_gene_label "TANC2^ENSG00000170921.15" ; ID "TANC2--CA4^ENST00000389520.8" ; Parent "TANC2--CA4^TANC2^ENSG00000170921.15" ; exon_id "ENSE00002709640.1" ; exon_number 1 ; gene_id "TANC2--CA4^TANC2^ENSG00000170921.15" ; gene_name TANC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179103.2" ; havana_transcript "OTTHUMT00000444766.1" ; hgnc_id "HGNC:30212" ; level 2 ; orig_coord_info "chr17,63009560,63009626,+" ; protein_id "ENSP00000374171.4" ; tag basic appris_alternative_2 ; transcript_id "TANC2--CA4^ENST00000389520.8" ; transcript_name "TANC2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TBL1XR1--RGS17 HAVANA gene 44575 56506 . + . FI_gene_label "RGS17^ENSG00000091844.8" ; ID "TBL1XR1--RGS17^RGS17^ENSG00000091844.8" ; ccdsid "CCDS5244.1" ; exon_id "ENSE00003894299.1" ; exon_number 2 ; gene_id "TBL1XR1--RGS17^RGS17^ENSG00000091844.8" ; gene_name RGS17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015858.4" ; havana_transcript "OTTHUMT00000504471.2" ; hgnc_id "HGNC:14088" ; level 2 ; orig_coord_info "chr6,153043900,153044018,-" ; protein_id "ENSP00000206262.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBL1XR1--RGS17^ENST00000206262.2" ; transcript_name "RGS17-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBL1XR1--RGS17 HAVANA mRNA 44575 56506 . + . FI_gene_label "RGS17^ENSG00000091844.8" ; ID "TBL1XR1--RGS17^ENST00000206262.2" ; Parent "TBL1XR1--RGS17^RGS17^ENSG00000091844.8" ; ccdsid "CCDS5244.1" ; exon_id "ENSE00003894299.1" ; exon_number 2 ; gene_id "TBL1XR1--RGS17^RGS17^ENSG00000091844.8" ; gene_name RGS17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015858.4" ; havana_transcript "OTTHUMT00000504471.2" ; hgnc_id "HGNC:14088" ; level 2 ; orig_coord_info "chr6,153043900,153044018,-" ; protein_id "ENSP00000206262.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBL1XR1--RGS17^ENST00000206262.2" ; transcript_name "RGS17-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBL1XR1--RGS17 HAVANA gene 3443 36148 . + . FI_gene_label "TBL1XR1^ENSG00000177565.18" ; ID "TBL1XR1--RGS17^TBL1XR1^ENSG00000177565.18" ; ccdsid "CCDS46961.1" ; exon_id "ENSE00001072449.4" ; exon_number 2 ; gene_id "TBL1XR1--RGS17^TBL1XR1^ENSG00000177565.18" ; gene_name TBL1XR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157140.29" ; havana_transcript "OTTHUMT00000347686.20" ; hgnc_id "HGNC:29529" ; level 2 ; orig_coord_info "chr3,177064920,177064977,-" ; protein_id "ENSP00000263964.11" ; tag alternative_5_UTR mRNA_end_NF RNA_Seq_supported_partial appris_principal_1 CCDS ; transcript_id "TBL1XR1--RGS17^ENST00000352800.10" ; transcript_name "TBL1XR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
TBL1XR1--RGS17 HAVANA mRNA 3443 36148 . + . FI_gene_label "TBL1XR1^ENSG00000177565.18" ; ID "TBL1XR1--RGS17^ENST00000352800.10" ; Parent "TBL1XR1--RGS17^TBL1XR1^ENSG00000177565.18" ; ccdsid "CCDS46961.1" ; exon_id "ENSE00001072449.4" ; exon_number 2 ; gene_id "TBL1XR1--RGS17^TBL1XR1^ENSG00000177565.18" ; gene_name TBL1XR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157140.29" ; havana_transcript "OTTHUMT00000347686.20" ; hgnc_id "HGNC:29529" ; level 2 ; orig_coord_info "chr3,177064920,177064977,-" ; protein_id "ENSP00000263964.11" ; tag alternative_5_UTR mRNA_end_NF RNA_Seq_supported_partial appris_principal_1 CCDS ; transcript_id "TBL1XR1--RGS17^ENST00000352800.10" ; transcript_name "TBL1XR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TENM3-AS1--TENM3 HAVANA gene 26131 28678 . + . FI_gene_label "TENM3^ENSG00000218336.9" ; ID "TENM3-AS1--TENM3^TENM3^ENSG00000218336.9" ; exon_id "ENSE00002027713.1" ; exon_number 1 ; gene_id "TENM3-AS1--TENM3^TENM3^ENSG00000218336.9" ; gene_name TENM3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160682.6" ; havana_transcript "OTTHUMT00000361738.2" ; hgnc_id "HGNC:29944" ; level 2 ; orig_coord_info "chr4,182448999,182449083,+" ; protein_id "ENSP00000426914.1" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "TENM3-AS1--TENM3^ENST00000510504.1" ; transcript_name "TENM3-203" ; transcript_support_level 3 ; transcript_type protein_coding
TENM3-AS1--TENM3 HAVANA mRNA 26131 28678 . + . FI_gene_label "TENM3^ENSG00000218336.9" ; ID "TENM3-AS1--TENM3^ENST00000510504.1" ; Parent "TENM3-AS1--TENM3^TENM3^ENSG00000218336.9" ; exon_id "ENSE00002027713.1" ; exon_number 1 ; gene_id "TENM3-AS1--TENM3^TENM3^ENSG00000218336.9" ; gene_name TENM3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160682.6" ; havana_transcript "OTTHUMT00000361738.2" ; hgnc_id "HGNC:29944" ; level 2 ; orig_coord_info "chr4,182448999,182449083,+" ; protein_id "ENSP00000426914.1" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "TENM3-AS1--TENM3^ENST00000510504.1" ; transcript_name "TENM3-203" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
TEX14--PTPRG HAVANA gene 1033 38841 . + . FI_gene_label "TEX14^ENSG00000121101.16" ; ID "TEX14--PTPRG^TEX14^ENSG00000121101.16" ; ccdsid "CCDS56042.1" ; exon_id "ENSE00001410784.1" ; exon_number 2 ; gene_id "TEX14--PTPRG^TEX14^ENSG00000121101.16" ; gene_name TEX14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179245.2" ; havana_transcript "OTTHUMT00000445446.1" ; hgnc_id "HGNC:11737" ; level 2 ; orig_coord_info "chr17,58651866,58652001,-" ; protein_id "ENSP00000240361.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "TEX14--PTPRG^ENST00000240361.12" ; transcript_name "TEX14-201" ; transcript_support_level 1 ; transcript_type protein_coding
TEX14--PTPRG HAVANA mRNA 1033 38841 . + . FI_gene_label "TEX14^ENSG00000121101.16" ; ID "TEX14--PTPRG^ENST00000240361.12" ; Parent "TEX14--PTPRG^TEX14^ENSG00000121101.16" ; ccdsid "CCDS56042.1" ; exon_id "ENSE00001410784.1" ; exon_number 2 ; gene_id "TEX14--PTPRG^TEX14^ENSG00000121101.16" ; gene_name TEX14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179245.2" ; havana_transcript "OTTHUMT00000445446.1" ; hgnc_id "HGNC:11737" ; level 2 ; orig_coord_info "chr17,58651866,58652001,-" ; protein_id "ENSP00000240361.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "TEX14--PTPRG^ENST00000240361.12" ; transcript_name "TEX14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TEX14--PTPRG HAVANA gene 42186 81075 . + . FI_gene_label "PTPRG^ENSG00000144724.20" ; ID "TEX14--PTPRG^PTPRG^ENSG00000144724.20" ; exon_id "ENSE00001873446.1" ; exon_number 1 ; gene_id "TEX14--PTPRG^PTPRG^ENSG00000144724.20" ; gene_name PTPRG ; gene_type protein_coding ; havana_gene "OTTHUMG00000158660.2" ; havana_transcript "OTTHUMT00000351675.1" ; hgnc_id "HGNC:9671" ; level 2 ; orig_coord_info "chr3,61562288,61562372,+" ; protein_id "ENSP00000295874.10" ; tag basic appris_alternative_2 ; transcript_id "TEX14--PTPRG^ENST00000295874.14" ; transcript_name "PTPRG-201" ; transcript_support_level 1 ; transcript_type protein_coding
TEX14--PTPRG HAVANA mRNA 42186 81075 . + . FI_gene_label "PTPRG^ENSG00000144724.20" ; ID "TEX14--PTPRG^ENST00000295874.14" ; Parent "TEX14--PTPRG^PTPRG^ENSG00000144724.20" ; exon_id "ENSE00001873446.1" ; exon_number 1 ; gene_id "TEX14--PTPRG^PTPRG^ENSG00000144724.20" ; gene_name PTPRG ; gene_type protein_coding ; havana_gene "OTTHUMG00000158660.2" ; havana_transcript "OTTHUMT00000351675.1" ; hgnc_id "HGNC:9671" ; level 2 ; orig_coord_info "chr3,61562288,61562372,+" ; protein_id "ENSP00000295874.10" ; tag basic appris_alternative_2 ; transcript_id "TEX14--PTPRG^ENST00000295874.14" ; transcript_name "PTPRG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM245--PTPN3 ENSEMBL gene 29645 63362 . + . FI_gene_label "PTPN3^ENSG00000070159.14" ; ID "TMEM245--PTPN3^PTPN3^ENSG00000070159.14" ; exon_id "ENSE00003737404.1" ; exon_number 2 ; gene_id "TMEM245--PTPN3^PTPN3^ENSG00000070159.14" ; gene_name PTPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020475.5" ; hgnc_id "HGNC:9655" ; level 3 ; orig_coord_info "chr9,109463297,109463434,-" ; protein_id "ENSP00000262539.4" ; tag basic ; transcript_id "TMEM245--PTPN3^ENST00000262539.7" ; transcript_name "PTPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
TMEM245--PTPN3 ENSEMBL mRNA 29645 63362 . + . FI_gene_label "PTPN3^ENSG00000070159.14" ; ID "TMEM245--PTPN3^ENST00000262539.7" ; Parent "TMEM245--PTPN3^PTPN3^ENSG00000070159.14" ; exon_id "ENSE00003737404.1" ; exon_number 2 ; gene_id "TMEM245--PTPN3^PTPN3^ENSG00000070159.14" ; gene_name PTPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020475.5" ; hgnc_id "HGNC:9655" ; level 3 ; orig_coord_info "chr9,109463297,109463434,-" ; protein_id "ENSP00000262539.4" ; tag basic ; transcript_id "TMEM245--PTPN3^ENST00000262539.7" ; transcript_name "PTPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TMEM245--PTPN3 HAVANA gene 1001 26644 . + . FI_gene_label "TMEM245^ENSG00000106771.13" ; ID "TMEM245--PTPN3^TMEM245^ENSG00000106771.13" ; ccdsid "CCDS43858.1" ; exon_id "ENSE00001181397.4" ; exon_number 1 ; gene_id "TMEM245--PTPN3^TMEM245^ENSG00000106771.13" ; gene_name TMEM245 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020469.4" ; havana_transcript "OTTHUMT00000053587.3" ; hgnc_id "HGNC:1363" ; level 2 ; orig_coord_info "chr9,109119335,109119913,-" ; protein_id "ENSP00000363714.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM245--PTPN3^ENST00000374586.8" ; transcript_name "TMEM245-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM245--PTPN3 HAVANA mRNA 1001 26644 . + . FI_gene_label "TMEM245^ENSG00000106771.13" ; ID "TMEM245--PTPN3^ENST00000374586.8" ; Parent "TMEM245--PTPN3^TMEM245^ENSG00000106771.13" ; ccdsid "CCDS43858.1" ; exon_id "ENSE00001181397.4" ; exon_number 1 ; gene_id "TMEM245--PTPN3^TMEM245^ENSG00000106771.13" ; gene_name TMEM245 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020469.4" ; havana_transcript "OTTHUMT00000053587.3" ; hgnc_id "HGNC:1363" ; level 2 ; orig_coord_info "chr9,109119335,109119913,-" ; protein_id "ENSP00000363714.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM245--PTPN3^ENST00000374586.8" ; transcript_name "TMEM245-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TPD52L2--AC005972.3 HAVANA gene 1067 12144 . + . FI_gene_label "TPD52L2^ENSG00000101150.18" ; ID "TPD52L2--AC005972.3^TPD52L2^ENSG00000101150.18" ; ccdsid "CCDS13542.1" ; exon_id "ENSE00001948884.1" ; exon_number 1 ; gene_id "TPD52L2--AC005972.3^TPD52L2^ENSG00000101150.18" ; gene_name TPD52L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033009.2" ; havana_transcript "OTTHUMT00000080249.1" ; hgnc_id "HGNC:12007" ; level 2 ; orig_coord_info "chr20,63865366,63865384,+" ; protein_id "ENSP00000217121.5" ; tag basic CCDS ; transcript_id "TPD52L2--AC005972.3^ENST00000217121.9" ; transcript_name "TPD52L2-201" ; transcript_support_level 2 ; transcript_type protein_coding
TPD52L2--AC005972.3 HAVANA mRNA 1067 12144 . + . FI_gene_label "TPD52L2^ENSG00000101150.18" ; ID "TPD52L2--AC005972.3^ENST00000217121.9" ; Parent "TPD52L2--AC005972.3^TPD52L2^ENSG00000101150.18" ; ccdsid "CCDS13542.1" ; exon_id "ENSE00001948884.1" ; exon_number 1 ; gene_id "TPD52L2--AC005972.3^TPD52L2^ENSG00000101150.18" ; gene_name TPD52L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033009.2" ; havana_transcript "OTTHUMT00000080249.1" ; hgnc_id "HGNC:12007" ; level 2 ; orig_coord_info "chr20,63865366,63865384,+" ; protein_id "ENSP00000217121.5" ; tag basic CCDS ; transcript_id "TPD52L2--AC005972.3^ENST00000217121.9" ; transcript_name "TPD52L2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TPD52L2--PRELID3BP3 HAVANA gene 1067 12144 . + . FI_gene_label "TPD52L2^ENSG00000101150.18" ; ID "TPD52L2--PRELID3BP3^TPD52L2^ENSG00000101150.18" ; ccdsid "CCDS13542.1" ; exon_id "ENSE00001948884.1" ; exon_number 1 ; gene_id "TPD52L2--PRELID3BP3^TPD52L2^ENSG00000101150.18" ; gene_name TPD52L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033009.2" ; havana_transcript "OTTHUMT00000080249.1" ; hgnc_id "HGNC:12007" ; level 2 ; orig_coord_info "chr20,63865366,63865384,+" ; protein_id "ENSP00000217121.5" ; tag basic CCDS ; transcript_id "TPD52L2--PRELID3BP3^ENST00000217121.9" ; transcript_name "TPD52L2-201" ; transcript_support_level 2 ; transcript_type protein_coding
TPD52L2--PRELID3BP3 HAVANA mRNA 1067 12144 . + . FI_gene_label "TPD52L2^ENSG00000101150.18" ; ID "TPD52L2--PRELID3BP3^ENST00000217121.9" ; Parent "TPD52L2--PRELID3BP3^TPD52L2^ENSG00000101150.18" ; ccdsid "CCDS13542.1" ; exon_id "ENSE00001948884.1" ; exon_number 1 ; gene_id "TPD52L2--PRELID3BP3^TPD52L2^ENSG00000101150.18" ; gene_name TPD52L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033009.2" ; havana_transcript "OTTHUMT00000080249.1" ; hgnc_id "HGNC:12007" ; level 2 ; orig_coord_info "chr20,63865366,63865384,+" ; protein_id "ENSP00000217121.5" ; tag basic CCDS ; transcript_id "TPD52L2--PRELID3BP3^ENST00000217121.9" ; transcript_name "TPD52L2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TPTE--BAGE2 HAVANA gene 1023 23850 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "TPTE--BAGE2^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
TPTE--BAGE2 HAVANA mRNA 1023 23850 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "TPTE--BAGE2^ENST00000427445.6" ; Parent "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "TPTE--BAGE2^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRAPPC4--DSCAML1 HAVANA gene 11706 45107 . + . FI_gene_label "DSCAML1^ENSG00000177103.15" ; ID "TRAPPC4--DSCAML1^DSCAML1^ENSG00000177103.15" ; ccdsid "CCDS8384.1" ; exon_id "ENSE00001313830.2" ; exon_number 1 ; gene_id "TRAPPC4--DSCAML1^DSCAML1^ENSG00000177103.15" ; gene_name DSCAML1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167071.5" ; havana_transcript "OTTHUMT00000392907.3" ; hgnc_id "HGNC:14656" ; level 2 ; orig_coord_info "chr11,117797034,117797259,-" ; protein_id "ENSP00000315465.6" ; tag basic appris_principal_2 CCDS ; transcript_id "TRAPPC4--DSCAML1^ENST00000321322.6" ; transcript_name "DSCAML1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRAPPC4--DSCAML1 HAVANA mRNA 11706 45107 . + . FI_gene_label "DSCAML1^ENSG00000177103.15" ; ID "TRAPPC4--DSCAML1^ENST00000321322.6" ; Parent "TRAPPC4--DSCAML1^DSCAML1^ENSG00000177103.15" ; ccdsid "CCDS8384.1" ; exon_id "ENSE00001313830.2" ; exon_number 1 ; gene_id "TRAPPC4--DSCAML1^DSCAML1^ENSG00000177103.15" ; gene_name DSCAML1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167071.5" ; havana_transcript "OTTHUMT00000392907.3" ; hgnc_id "HGNC:14656" ; level 2 ; orig_coord_info "chr11,117797034,117797259,-" ; protein_id "ENSP00000315465.6" ; tag basic appris_principal_2 CCDS ; transcript_id "TRAPPC4--DSCAML1^ENST00000321322.6" ; transcript_name "DSCAML1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRAPPC4--DSCAML1 HAVANA gene 1004 5787 . + . FI_gene_label "TRAPPC4^ENSG00000196655.12" ; ID "TRAPPC4--DSCAML1^TRAPPC4^ENSG00000196655.12" ; ccdsid "CCDS81634.1" ; exon_id "ENSE00003545520.1" ; exon_number 1 ; gene_id "TRAPPC4--DSCAML1^TRAPPC4^ENSG00000196655.12" ; gene_name TRAPPC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166351.2" ; havana_transcript "OTTHUMT00000389339.1" ; hgnc_id "HGNC:19943" ; level 2 ; orig_coord_info "chr11,119018796,119018970,+" ; protein_id "ENSP00000351896.4" ; tag basic CCDS ; transcript_id "TRAPPC4--DSCAML1^ENST00000359005.8" ; transcript_name "TRAPPC4-201" ; transcript_support_level 2 ; transcript_type protein_coding
TRAPPC4--DSCAML1 HAVANA mRNA 1004 5787 . + . FI_gene_label "TRAPPC4^ENSG00000196655.12" ; ID "TRAPPC4--DSCAML1^ENST00000359005.8" ; Parent "TRAPPC4--DSCAML1^TRAPPC4^ENSG00000196655.12" ; ccdsid "CCDS81634.1" ; exon_id "ENSE00003545520.1" ; exon_number 1 ; gene_id "TRAPPC4--DSCAML1^TRAPPC4^ENSG00000196655.12" ; gene_name TRAPPC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166351.2" ; havana_transcript "OTTHUMT00000389339.1" ; hgnc_id "HGNC:19943" ; level 2 ; orig_coord_info "chr11,119018796,119018970,+" ; protein_id "ENSP00000351896.4" ; tag basic CCDS ; transcript_id "TRAPPC4--DSCAML1^ENST00000359005.8" ; transcript_name "TRAPPC4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TRIM66--DENND2B ENSEMBL gene 8373 34304 . + . FI_gene_label "TRIM66^ENSG00000166436.16" ; ID "TRIM66--DENND2B^TRIM66^ENSG00000166436.16" ; exon_id "ENSE00003504553.1" ; exon_number 2 ; gene_id "TRIM66--DENND2B^TRIM66^ENSG00000166436.16" ; gene_name TRIM66 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150481.6" ; hgnc_id "HGNC:29005" ; level 3 ; orig_coord_info "chr11,8651800,8651808,-" ; protein_id "ENSP00000299550.6" ; tag basic ; transcript_id "TRIM66--DENND2B^ENST00000299550.10" ; transcript_name "TRIM66-201" ; transcript_support_level 5 ; transcript_type protein_coding
TRIM66--DENND2B ENSEMBL mRNA 8373 34304 . + . FI_gene_label "TRIM66^ENSG00000166436.16" ; ID "TRIM66--DENND2B^ENST00000299550.10" ; Parent "TRIM66--DENND2B^TRIM66^ENSG00000166436.16" ; exon_id "ENSE00003504553.1" ; exon_number 2 ; gene_id "TRIM66--DENND2B^TRIM66^ENSG00000166436.16" ; gene_name TRIM66 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150481.6" ; hgnc_id "HGNC:29005" ; level 3 ; orig_coord_info "chr11,8651800,8651808,-" ; protein_id "ENSP00000299550.6" ; tag basic ; transcript_id "TRIM66--DENND2B^ENST00000299550.10" ; transcript_name "TRIM66-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TRIM66--DENND2B HAVANA gene 50278 84818 . + . FI_gene_label "DENND2B^ENSG00000166444.19" ; ID "TRIM66--DENND2B^DENND2B^ENSG00000166444.19" ; ccdsid "CCDS7791.1" ; exon_id "ENSE00003597340.1" ; exon_number 2 ; gene_id "TRIM66--DENND2B^DENND2B^ENSG00000166444.19" ; gene_name DENND2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000165835.4" ; havana_transcript "OTTHUMT00000386519.2" ; hgnc_id "HGNC:11350" ; level 2 ; orig_coord_info "chr11,8750621,8750700,-" ; protein_id "ENSP00000319678.6" ; tag basic MANE_Select CCDS ; transcript_id "TRIM66--DENND2B^ENST00000313726.11" ; transcript_name "DENND2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM66--DENND2B HAVANA mRNA 50278 84818 . + . FI_gene_label "DENND2B^ENSG00000166444.19" ; ID "TRIM66--DENND2B^ENST00000313726.11" ; Parent "TRIM66--DENND2B^DENND2B^ENSG00000166444.19" ; ccdsid "CCDS7791.1" ; exon_id "ENSE00003597340.1" ; exon_number 2 ; gene_id "TRIM66--DENND2B^DENND2B^ENSG00000166444.19" ; gene_name DENND2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000165835.4" ; havana_transcript "OTTHUMT00000386519.2" ; hgnc_id "HGNC:11350" ; level 2 ; orig_coord_info "chr11,8750621,8750700,-" ; protein_id "ENSP00000319678.6" ; tag basic MANE_Select CCDS ; transcript_id "TRIM66--DENND2B^ENST00000313726.11" ; transcript_name "DENND2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TSHZ2--PTPRT ENSEMBL gene 3340 7432 . + . FI_gene_label "TSHZ2^ENSG00000182463.16" ; ID "TSHZ2--PTPRT^TSHZ2^ENSG00000182463.16" ; exon_id "ENSE00003593980.2" ; exon_number 1 ; gene_id "TSHZ2--PTPRT^TSHZ2^ENSG00000182463.16" ; gene_name TSHZ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033058.9" ; hgnc_id "HGNC:13010" ; level 3 ; orig_coord_info "chr20,53185646,53185676,+" ; protein_id "ENSP00000333114.5" ; tag basic ; transcript_id "TSHZ2--PTPRT^ENST00000329613.7" ; transcript_name "TSHZ2-201" ; transcript_support_level 4 ; transcript_type protein_coding
TSHZ2--PTPRT ENSEMBL mRNA 3340 7432 . + . FI_gene_label "TSHZ2^ENSG00000182463.16" ; ID "TSHZ2--PTPRT^ENST00000329613.7" ; Parent "TSHZ2--PTPRT^TSHZ2^ENSG00000182463.16" ; exon_id "ENSE00003593980.2" ; exon_number 1 ; gene_id "TSHZ2--PTPRT^TSHZ2^ENSG00000182463.16" ; gene_name TSHZ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033058.9" ; hgnc_id "HGNC:13010" ; level 3 ; orig_coord_info "chr20,53185646,53185676,+" ; protein_id "ENSP00000333114.5" ; tag basic ; transcript_id "TSHZ2--PTPRT^ENST00000329613.7" ; transcript_name "TSHZ2-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
TSHZ2--PTPRT HAVANA gene 19868 65127 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "TSHZ2--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "TSHZ2--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "TSHZ2--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
TSHZ2--PTPRT HAVANA mRNA 19868 65127 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "TSHZ2--PTPRT^ENST00000356100.6" ; Parent "TSHZ2--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "TSHZ2--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "TSHZ2--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TTC5--TEP1 HAVANA gene 1010 15744 . + . FI_gene_label "TTC5^ENSG00000136319.12" ; ID "TTC5--TEP1^TTC5^ENSG00000136319.12" ; ccdsid "CCDS9546.1" ; exon_id "ENSE00002284618.2" ; exon_number 1 ; gene_id "TTC5--TEP1^TTC5^ENSG00000136319.12" ; gene_name TTC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000029506.7" ; havana_transcript "OTTHUMT00000073529.5" ; hgnc_id "HGNC:19274" ; level 2 ; orig_coord_info "chr14,20305887,20305937,-" ; protein_id "ENSP00000258821.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTC5--TEP1^ENST00000258821.8" ; transcript_name "TTC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC5--TEP1 HAVANA mRNA 1010 15744 . + . FI_gene_label "TTC5^ENSG00000136319.12" ; ID "TTC5--TEP1^ENST00000258821.8" ; Parent "TTC5--TEP1^TTC5^ENSG00000136319.12" ; ccdsid "CCDS9546.1" ; exon_id "ENSE00002284618.2" ; exon_number 1 ; gene_id "TTC5--TEP1^TTC5^ENSG00000136319.12" ; gene_name TTC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000029506.7" ; havana_transcript "OTTHUMT00000073529.5" ; hgnc_id "HGNC:19274" ; level 2 ; orig_coord_info "chr14,20305887,20305937,-" ; protein_id "ENSP00000258821.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTC5--TEP1^ENST00000258821.8" ; transcript_name "TTC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC5--TEP1 HAVANA gene 23505 59321 . + . FI_gene_label "TEP1^ENSG00000129566.13" ; ID "TTC5--TEP1^TEP1^ENSG00000129566.13" ; ccdsid "CCDS9548.1" ; exon_id "ENSE00001124486.4" ; exon_number 2 ; gene_id "TTC5--TEP1^TEP1^ENSG00000129566.13" ; gene_name TEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000029515.7" ; havana_transcript "OTTHUMT00000073563.3" ; hgnc_id "HGNC:11726" ; level 2 ; orig_coord_info "chr14,20407873,20408439,-" ; protein_id "ENSP00000262715.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTC5--TEP1^ENST00000262715.10" ; transcript_name "TEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC5--TEP1 HAVANA mRNA 23505 59321 . + . FI_gene_label "TEP1^ENSG00000129566.13" ; ID "TTC5--TEP1^ENST00000262715.10" ; Parent "TTC5--TEP1^TEP1^ENSG00000129566.13" ; ccdsid "CCDS9548.1" ; exon_id "ENSE00001124486.4" ; exon_number 2 ; gene_id "TTC5--TEP1^TEP1^ENSG00000129566.13" ; gene_name TEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000029515.7" ; havana_transcript "OTTHUMT00000073563.3" ; hgnc_id "HGNC:11726" ; level 2 ; orig_coord_info "chr14,20407873,20408439,-" ; protein_id "ENSP00000262715.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTC5--TEP1^ENST00000262715.10" ; transcript_name "TEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC6--AL121790.1 ENSEMBL gene 25637 41624 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "TTC6--AL121790.1^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "TTC6--AL121790.1^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "TTC6--AL121790.1^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
TTC6--AL121790.1 ENSEMBL mRNA 25637 41624 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "TTC6--AL121790.1^ENST00000267368.11" ; Parent "TTC6--AL121790.1^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "TTC6--AL121790.1^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "TTC6--AL121790.1^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TWSG1--ANKRD12 HAVANA gene 1007 10658 . + . FI_gene_label "TWSG1^ENSG00000128791.12" ; ID "TWSG1--ANKRD12^TWSG1^ENSG00000128791.12" ; ccdsid "CCDS11844.1" ; exon_id "ENSE00001187778.2" ; exon_number 2 ; gene_id "TWSG1--ANKRD12^TWSG1^ENSG00000128791.12" ; gene_name TWSG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131597.5" ; havana_transcript "OTTHUMT00000254480.3" ; hgnc_id "HGNC:12429" ; level 2 ; orig_coord_info "chr18,9337230,9337352,+" ; protein_id "ENSP00000262120.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TWSG1--ANKRD12^ENST00000262120.10" ; transcript_name "TWSG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TWSG1--ANKRD12 HAVANA mRNA 1007 10658 . + . FI_gene_label "TWSG1^ENSG00000128791.12" ; ID "TWSG1--ANKRD12^ENST00000262120.10" ; Parent "TWSG1--ANKRD12^TWSG1^ENSG00000128791.12" ; ccdsid "CCDS11844.1" ; exon_id "ENSE00001187778.2" ; exon_number 2 ; gene_id "TWSG1--ANKRD12^TWSG1^ENSG00000128791.12" ; gene_name TWSG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131597.5" ; havana_transcript "OTTHUMT00000254480.3" ; hgnc_id "HGNC:12429" ; level 2 ; orig_coord_info "chr18,9337230,9337352,+" ; protein_id "ENSP00000262120.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TWSG1--ANKRD12^ENST00000262120.10" ; transcript_name "TWSG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TWSG1--ANKRD12 HAVANA gene 14212 41797 . + . FI_gene_label "ANKRD12^ENSG00000101745.17" ; ID "TWSG1--ANKRD12^ANKRD12^ENSG00000101745.17" ; ccdsid "CCDS11843.1" ; exon_id "ENSE00003504057.1" ; exon_number 2 ; gene_id "TWSG1--ANKRD12^ANKRD12^ENSG00000101745.17" ; gene_name ANKRD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131595.7" ; havana_transcript "OTTHUMT00000254478.3" ; hgnc_id "HGNC:29135" ; level 2 ; orig_coord_info "chr18,9182433,9182519,+" ; protein_id "ENSP00000262126.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TWSG1--ANKRD12^ENST00000262126.9" ; transcript_name "ANKRD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
TWSG1--ANKRD12 HAVANA mRNA 14212 41797 . + . FI_gene_label "ANKRD12^ENSG00000101745.17" ; ID "TWSG1--ANKRD12^ENST00000262126.9" ; Parent "TWSG1--ANKRD12^ANKRD12^ENSG00000101745.17" ; ccdsid "CCDS11843.1" ; exon_id "ENSE00003504057.1" ; exon_number 2 ; gene_id "TWSG1--ANKRD12^ANKRD12^ENSG00000101745.17" ; gene_name ANKRD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131595.7" ; havana_transcript "OTTHUMT00000254478.3" ; hgnc_id "HGNC:29135" ; level 2 ; orig_coord_info "chr18,9182433,9182519,+" ; protein_id "ENSP00000262126.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TWSG1--ANKRD12^ENST00000262126.9" ; transcript_name "ANKRD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXLNG--SYAP1 HAVANA gene 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--SYAP1^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--SYAP1^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--SYAP1^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXLNG--SYAP1 HAVANA mRNA 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--SYAP1^ENST00000380122.10" ; Parent "TXLNG--SYAP1^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--SYAP1^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--SYAP1^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXLNG--SYAP1 HAVANA gene 17456 31157 . + . FI_gene_label "SYAP1^ENSG00000169895.6" ; ID "TXLNG--SYAP1^SYAP1^ENSG00000169895.6" ; ccdsid "CCDS14177.1" ; exon_id "ENSE00001483985.2" ; exon_number 1 ; gene_id "TXLNG--SYAP1^SYAP1^ENSG00000169895.6" ; gene_name SYAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021192.2" ; havana_transcript "OTTHUMT00000055904.2" ; hgnc_id "HGNC:16273" ; level 2 ; orig_coord_info "chrX,16719725,16719899,+" ; protein_id "ENSP00000369500.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--SYAP1^ENST00000380155.4" ; transcript_name "SYAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXLNG--SYAP1 HAVANA mRNA 17456 31157 . + . FI_gene_label "SYAP1^ENSG00000169895.6" ; ID "TXLNG--SYAP1^ENST00000380155.4" ; Parent "TXLNG--SYAP1^SYAP1^ENSG00000169895.6" ; ccdsid "CCDS14177.1" ; exon_id "ENSE00001483985.2" ; exon_number 1 ; gene_id "TXLNG--SYAP1^SYAP1^ENSG00000169895.6" ; gene_name SYAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021192.2" ; havana_transcript "OTTHUMT00000055904.2" ; hgnc_id "HGNC:16273" ; level 2 ; orig_coord_info "chrX,16719725,16719899,+" ; protein_id "ENSP00000369500.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--SYAP1^ENST00000380155.4" ; transcript_name "SYAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UNK--ABCA5 HAVANA gene 22266 67944 . + . FI_gene_label "ABCA5^ENSG00000154265.16" ; ID "UNK--ABCA5^ABCA5^ENSG00000154265.16" ; ccdsid "CCDS11685.1" ; exon_id "ENSE00001260588.7" ; exon_number 2 ; gene_id "UNK--ABCA5^ABCA5^ENSG00000154265.16" ; gene_name ABCA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180303.4" ; havana_transcript "OTTHUMT00000450654.3" ; hgnc_id "HGNC:35" ; level 2 ; orig_coord_info "chr17,69314314,69314415,-" ; protein_id "ENSP00000376443.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UNK--ABCA5^ENST00000392676.8" ; transcript_name "ABCA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
UNK--ABCA5 HAVANA mRNA 22266 67944 . + . FI_gene_label "ABCA5^ENSG00000154265.16" ; ID "UNK--ABCA5^ENST00000392676.8" ; Parent "UNK--ABCA5^ABCA5^ENSG00000154265.16" ; ccdsid "CCDS11685.1" ; exon_id "ENSE00001260588.7" ; exon_number 2 ; gene_id "UNK--ABCA5^ABCA5^ENSG00000154265.16" ; gene_name ABCA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180303.4" ; havana_transcript "OTTHUMT00000450654.3" ; hgnc_id "HGNC:35" ; level 2 ; orig_coord_info "chr17,69314314,69314415,-" ; protein_id "ENSP00000376443.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UNK--ABCA5^ENST00000392676.8" ; transcript_name "ABCA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UNK--ABCA5 HAVANA gene 7677 10460 . + . FI_gene_label "UNK^ENSG00000132478.10" ; ID "UNK--ABCA5^UNK^ENSG00000132478.10" ; exon_id "ENSE00002879579.1" ; exon_number 1 ; gene_id "UNK--ABCA5^UNK^ENSG00000132478.10" ; gene_name UNK ; gene_type protein_coding ; havana_gene "OTTHUMG00000179892.4" ; havana_transcript "OTTHUMT00000448841.2" ; hgnc_id "HGNC:29369" ; level 2 ; orig_coord_info "chr17,75812148,75812352,+" ; protein_id "ENSP00000466054.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "UNK--ABCA5^ENST00000586217.1" ; transcript_name "UNK-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
UNK--ABCA5 HAVANA mRNA 7677 10460 . + . FI_gene_label "UNK^ENSG00000132478.10" ; ID "UNK--ABCA5^ENST00000586217.1" ; Parent "UNK--ABCA5^UNK^ENSG00000132478.10" ; exon_id "ENSE00002879579.1" ; exon_number 1 ; gene_id "UNK--ABCA5^UNK^ENSG00000132478.10" ; gene_name UNK ; gene_type protein_coding ; havana_gene "OTTHUMG00000179892.4" ; havana_transcript "OTTHUMT00000448841.2" ; hgnc_id "HGNC:29369" ; level 2 ; orig_coord_info "chr17,75812148,75812352,+" ; protein_id "ENSP00000466054.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "UNK--ABCA5^ENST00000586217.1" ; transcript_name "UNK-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
UNK--AC115085.1 HAVANA gene 7677 10460 . + . FI_gene_label "UNK^ENSG00000132478.10" ; ID "UNK--AC115085.1^UNK^ENSG00000132478.10" ; exon_id "ENSE00002879579.1" ; exon_number 1 ; gene_id "UNK--AC115085.1^UNK^ENSG00000132478.10" ; gene_name UNK ; gene_type protein_coding ; havana_gene "OTTHUMG00000179892.4" ; havana_transcript "OTTHUMT00000448841.2" ; hgnc_id "HGNC:29369" ; level 2 ; orig_coord_info "chr17,75812148,75812352,+" ; protein_id "ENSP00000466054.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "UNK--AC115085.1^ENST00000586217.1" ; transcript_name "UNK-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
UNK--AC115085.1 HAVANA mRNA 7677 10460 . + . FI_gene_label "UNK^ENSG00000132478.10" ; ID "UNK--AC115085.1^ENST00000586217.1" ; Parent "UNK--AC115085.1^UNK^ENSG00000132478.10" ; exon_id "ENSE00002879579.1" ; exon_number 1 ; gene_id "UNK--AC115085.1^UNK^ENSG00000132478.10" ; gene_name UNK ; gene_type protein_coding ; havana_gene "OTTHUMG00000179892.4" ; havana_transcript "OTTHUMT00000448841.2" ; hgnc_id "HGNC:29369" ; level 2 ; orig_coord_info "chr17,75812148,75812352,+" ; protein_id "ENSP00000466054.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "UNK--AC115085.1^ENST00000586217.1" ; transcript_name "UNK-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
VAV3--AP4B1-AS1 HAVANA gene 1001 42882 . + . FI_gene_label "VAV3^ENSG00000134215.16" ; ID "VAV3--AP4B1-AS1^VAV3^ENSG00000134215.16" ; ccdsid "CCDS785.1" ; exon_id "ENSE00001894713.3" ; exon_number 1 ; gene_id "VAV3--AP4B1-AS1^VAV3^ENSG00000134215.16" ; gene_name VAV3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010995.5" ; havana_transcript "OTTHUMT00000030242.3" ; hgnc_id "HGNC:12659" ; level 2 ; orig_coord_info "chr1,107964666,107964869,-" ; protein_id "ENSP00000359073.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VAV3--AP4B1-AS1^ENST00000370056.9" ; transcript_name "VAV3-202" ; transcript_support_level 1 ; transcript_type protein_coding
VAV3--AP4B1-AS1 HAVANA mRNA 1001 42882 . + . FI_gene_label "VAV3^ENSG00000134215.16" ; ID "VAV3--AP4B1-AS1^ENST00000370056.9" ; Parent "VAV3--AP4B1-AS1^VAV3^ENSG00000134215.16" ; ccdsid "CCDS785.1" ; exon_id "ENSE00001894713.3" ; exon_number 1 ; gene_id "VAV3--AP4B1-AS1^VAV3^ENSG00000134215.16" ; gene_name VAV3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010995.5" ; havana_transcript "OTTHUMT00000030242.3" ; hgnc_id "HGNC:12659" ; level 2 ; orig_coord_info "chr1,107964666,107964869,-" ; protein_id "ENSP00000359073.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VAV3--AP4B1-AS1^ENST00000370056.9" ; transcript_name "VAV3-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS35L--IQCK ENSEMBL gene 1176 39698 . + . FI_gene_label "VPS35L^ENSG00000103544.15" ; ID "VPS35L--IQCK^VPS35L^ENSG00000103544.15" ; ccdsid "CCDS32397.2" ; exon_id "ENSE00002247038.1" ; exon_number 1 ; gene_id "VPS35L--IQCK^VPS35L^ENSG00000103544.15" ; gene_name VPS35L ; gene_type protein_coding ; havana_gene "OTTHUMG00000167925.11" ; hgnc_id "HGNC:24641" ; level 3 ; orig_coord_info "chr16,19555463,19555746,+" ; protein_id "ENSP00000251143.6" ; tag basic appris_principal_4 CCDS ; transcript_id "VPS35L--IQCK^ENST00000251143.9" ; transcript_name "VPS35L-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS35L--IQCK ENSEMBL mRNA 1176 39698 . + . FI_gene_label "VPS35L^ENSG00000103544.15" ; ID "VPS35L--IQCK^ENST00000251143.9" ; Parent "VPS35L--IQCK^VPS35L^ENSG00000103544.15" ; ccdsid "CCDS32397.2" ; exon_id "ENSE00002247038.1" ; exon_number 1 ; gene_id "VPS35L--IQCK^VPS35L^ENSG00000103544.15" ; gene_name VPS35L ; gene_type protein_coding ; havana_gene "OTTHUMG00000167925.11" ; hgnc_id "HGNC:24641" ; level 3 ; orig_coord_info "chr16,19555463,19555746,+" ; protein_id "ENSP00000251143.6" ; tag basic appris_principal_4 CCDS ; transcript_id "VPS35L--IQCK^ENST00000251143.9" ; transcript_name "VPS35L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS35L--IQCK HAVANA gene 45377 58897 . + . FI_gene_label "IQCK^ENSG00000174628.16" ; ID "VPS35L--IQCK^IQCK^ENSG00000174628.16" ; exon_id "ENSE00001344662.2" ; exon_number 2 ; gene_id "VPS35L--IQCK^IQCK^ENSG00000174628.16" ; gene_name IQCK ; gene_type protein_coding ; havana_gene "OTTHUMG00000131453.5" ; havana_transcript "OTTHUMT00000436029.1" ; hgnc_id "HGNC:28556" ; level 2 ; orig_coord_info "chr16,19718307,19718487,+" ; protein_id "ENSP00000309261.9" ; transcript_id "VPS35L--IQCK^ENST00000308214.13" ; transcript_name "IQCK-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
VPS35L--IQCK HAVANA mRNA 45377 58897 . + . FI_gene_label "IQCK^ENSG00000174628.16" ; ID "VPS35L--IQCK^ENST00000308214.13" ; Parent "VPS35L--IQCK^IQCK^ENSG00000174628.16" ; exon_id "ENSE00001344662.2" ; exon_number 2 ; gene_id "VPS35L--IQCK^IQCK^ENSG00000174628.16" ; gene_name IQCK ; gene_type protein_coding ; havana_gene "OTTHUMG00000131453.5" ; havana_transcript "OTTHUMT00000436029.1" ; hgnc_id "HGNC:28556" ; level 2 ; orig_coord_info "chr16,19718307,19718487,+" ; protein_id "ENSP00000309261.9" ; transcript_id "VPS35L--IQCK^ENST00000308214.13" ; transcript_name "IQCK-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
VTCN1--KRT18P24 ENSEMBL gene 1001 11026 . + . FI_gene_label "VTCN1^ENSG00000134258.17" ; ID "VTCN1--KRT18P24^VTCN1^ENSG00000134258.17" ; ccdsid "CCDS58020.1" ; exon_id "ENSE00003733740.1" ; exon_number 1 ; gene_id "VTCN1--KRT18P24^VTCN1^ENSG00000134258.17" ; gene_name VTCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012118.4" ; hgnc_id "HGNC:28873" ; level 3 ; orig_coord_info "chr1,117210824,117210855,-" ; protein_id "ENSP00000328168.3" ; tag basic CCDS ; transcript_id "VTCN1--KRT18P24^ENST00000328189.7" ; transcript_name "VTCN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
VTCN1--KRT18P24 ENSEMBL mRNA 1001 11026 . + . FI_gene_label "VTCN1^ENSG00000134258.17" ; ID "VTCN1--KRT18P24^ENST00000328189.7" ; Parent "VTCN1--KRT18P24^VTCN1^ENSG00000134258.17" ; ccdsid "CCDS58020.1" ; exon_id "ENSE00003733740.1" ; exon_number 1 ; gene_id "VTCN1--KRT18P24^VTCN1^ENSG00000134258.17" ; gene_name VTCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012118.4" ; hgnc_id "HGNC:28873" ; level 3 ; orig_coord_info "chr1,117210824,117210855,-" ; protein_id "ENSP00000328168.3" ; tag basic CCDS ; transcript_id "VTCN1--KRT18P24^ENST00000328189.7" ; transcript_name "VTCN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
VTCN1--MTND2P8 ENSEMBL gene 1001 11026 . + . FI_gene_label "VTCN1^ENSG00000134258.17" ; ID "VTCN1--MTND2P8^VTCN1^ENSG00000134258.17" ; ccdsid "CCDS58020.1" ; exon_id "ENSE00003733740.1" ; exon_number 1 ; gene_id "VTCN1--MTND2P8^VTCN1^ENSG00000134258.17" ; gene_name VTCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012118.4" ; hgnc_id "HGNC:28873" ; level 3 ; orig_coord_info "chr1,117210824,117210855,-" ; protein_id "ENSP00000328168.3" ; tag basic CCDS ; transcript_id "VTCN1--MTND2P8^ENST00000328189.7" ; transcript_name "VTCN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
VTCN1--MTND2P8 ENSEMBL mRNA 1001 11026 . + . FI_gene_label "VTCN1^ENSG00000134258.17" ; ID "VTCN1--MTND2P8^ENST00000328189.7" ; Parent "VTCN1--MTND2P8^VTCN1^ENSG00000134258.17" ; ccdsid "CCDS58020.1" ; exon_id "ENSE00003733740.1" ; exon_number 1 ; gene_id "VTCN1--MTND2P8^VTCN1^ENSG00000134258.17" ; gene_name VTCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012118.4" ; hgnc_id "HGNC:28873" ; level 3 ; orig_coord_info "chr1,117210824,117210855,-" ; protein_id "ENSP00000328168.3" ; tag basic CCDS ; transcript_id "VTCN1--MTND2P8^ENST00000328189.7" ; transcript_name "VTCN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZFP36L2--THADA HAVANA gene 1001 5205 . + . FI_gene_label "ZFP36L2^ENSG00000152518.8" ; ID "ZFP36L2--THADA^ZFP36L2^ENSG00000152518.8" ; ccdsid "CCDS1811.1" ; exon_id "ENSE00001069476.5" ; exon_number 1 ; gene_id "ZFP36L2--THADA^ZFP36L2^ENSG00000152518.8" ; gene_name ZFP36L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128642.3" ; havana_transcript "OTTHUMT00000250513.3" ; hgnc_id "HGNC:1108" ; level 2 ; orig_coord_info "chr2,43226265,43226315,-" ; protein_id "ENSP00000282388.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFP36L2--THADA^ENST00000282388.4" ; transcript_name "ZFP36L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFP36L2--THADA HAVANA mRNA 1001 5205 . + . FI_gene_label "ZFP36L2^ENSG00000152518.8" ; ID "ZFP36L2--THADA^ENST00000282388.4" ; Parent "ZFP36L2--THADA^ZFP36L2^ENSG00000152518.8" ; ccdsid "CCDS1811.1" ; exon_id "ENSE00001069476.5" ; exon_number 1 ; gene_id "ZFP36L2--THADA^ZFP36L2^ENSG00000152518.8" ; gene_name ZFP36L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128642.3" ; havana_transcript "OTTHUMT00000250513.3" ; hgnc_id "HGNC:1108" ; level 2 ; orig_coord_info "chr2,43226265,43226315,-" ; protein_id "ENSP00000282388.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFP36L2--THADA^ENST00000282388.4" ; transcript_name "ZFP36L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFP36L2--THADA HAVANA gene 8206 63946 . + . FI_gene_label "THADA^ENSG00000115970.19" ; ID "ZFP36L2--THADA^THADA^ENSG00000115970.19" ; exon_id "ENSE00003655012.1" ; exon_number 2 ; gene_id "ZFP36L2--THADA^THADA^ENSG00000115970.19" ; gene_name THADA ; gene_type protein_coding ; havana_gene "OTTHUMG00000152398.10" ; havana_transcript "OTTHUMT00000326071.7" ; hgnc_id "HGNC:19217" ; level 2 ; orig_coord_info "chr2,43592317,43592392,-" ; protein_id "ENSP00000381647.1" ; transcript_id "ZFP36L2--THADA^ENST00000398653.5" ; transcript_name "THADA-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
ZFP36L2--THADA HAVANA mRNA 8206 63946 . + . FI_gene_label "THADA^ENSG00000115970.19" ; ID "ZFP36L2--THADA^ENST00000398653.5" ; Parent "ZFP36L2--THADA^THADA^ENSG00000115970.19" ; exon_id "ENSE00003655012.1" ; exon_number 2 ; gene_id "ZFP36L2--THADA^THADA^ENSG00000115970.19" ; gene_name THADA ; gene_type protein_coding ; havana_gene "OTTHUMG00000152398.10" ; havana_transcript "OTTHUMT00000326071.7" ; hgnc_id "HGNC:19217" ; level 2 ; orig_coord_info "chr2,43592317,43592392,-" ; protein_id "ENSP00000381647.1" ; transcript_id "ZFP36L2--THADA^ENST00000398653.5" ; transcript_name "THADA-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
ZNF217--SULF2 ENSEMBL gene 5783 15415 . + . FI_gene_label "ZNF217^ENSG00000171940.14" ; ID "ZNF217--SULF2^ZNF217^ENSG00000171940.14" ; ccdsid "CCDS13443.1" ; exon_id "ENSE00001455277.1" ; exon_number 1 ; gene_id "ZNF217--SULF2^ZNF217^ENSG00000171940.14" ; gene_name ZNF217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032764.5" ; hgnc_id "HGNC:13009" ; level 3 ; orig_coord_info "chr20,53581461,53582826,-" ; protein_id "ENSP00000304308.3" ; tag basic appris_principal_1 CCDS ; transcript_id "ZNF217--SULF2^ENST00000302342.3" ; transcript_name "ZNF217-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF217--SULF2 ENSEMBL mRNA 5783 15415 . + . FI_gene_label "ZNF217^ENSG00000171940.14" ; ID "ZNF217--SULF2^ENST00000302342.3" ; Parent "ZNF217--SULF2^ZNF217^ENSG00000171940.14" ; ccdsid "CCDS13443.1" ; exon_id "ENSE00001455277.1" ; exon_number 1 ; gene_id "ZNF217--SULF2^ZNF217^ENSG00000171940.14" ; gene_name ZNF217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032764.5" ; hgnc_id "HGNC:13009" ; level 3 ; orig_coord_info "chr20,53581461,53582826,-" ; protein_id "ENSP00000304308.3" ; tag basic appris_principal_1 CCDS ; transcript_id "ZNF217--SULF2^ENST00000302342.3" ; transcript_name "ZNF217-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF217--SULF2 HAVANA gene 18448 42480 . + . FI_gene_label "SULF2^ENSG00000196562.14" ; ID "ZNF217--SULF2^SULF2^ENSG00000196562.14" ; ccdsid "CCDS13408.1" ; exon_id "ENSE00003553626.1" ; exon_number 2 ; gene_id "ZNF217--SULF2^SULF2^ENSG00000196562.14" ; gene_name SULF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032675.9" ; havana_transcript "OTTHUMT00000079606.1" ; hgnc_id "HGNC:20392" ; level 2 ; orig_coord_info "chr20,47757189,47757363,-" ; protein_id "ENSP00000353007.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF217--SULF2^ENST00000359930.8" ; transcript_name "SULF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF217--SULF2 HAVANA mRNA 18448 42480 . + . FI_gene_label "SULF2^ENSG00000196562.14" ; ID "ZNF217--SULF2^ENST00000359930.8" ; Parent "ZNF217--SULF2^SULF2^ENSG00000196562.14" ; ccdsid "CCDS13408.1" ; exon_id "ENSE00003553626.1" ; exon_number 2 ; gene_id "ZNF217--SULF2^SULF2^ENSG00000196562.14" ; gene_name SULF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032675.9" ; havana_transcript "OTTHUMT00000079606.1" ; hgnc_id "HGNC:20392" ; level 2 ; orig_coord_info "chr20,47757189,47757363,-" ; protein_id "ENSP00000353007.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF217--SULF2^ENST00000359930.8" ; transcript_name "SULF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ABCA5--PPP4R1L HAVANA gene 49803 60051 . + . FI_gene_label "PPP4R1L^ENSG00000124224.17" ; ID "ABCA5--PPP4R1L^PPP4R1L^ENSG00000124224.17" ; exon_id "ENSE00003583250.1" ; exon_number 1 ; gene_id "ABCA5--PPP4R1L^PPP4R1L^ENSG00000124224.17" ; gene_name PPP4R1L ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000032838.12" ; havana_transcript "OTTHUMT00000079872.6" ; hgnc_id "HGNC:15755" ; level 2 ; orig_coord_info "chr20,58309419,58309439,-" ; transcript_id "ABCA5--PPP4R1L^ENST00000244070.7" ; transcript_name "PPP4R1L-201" ; transcript_support_level 1 ; transcript_type processed_transcript
ABCA5--PPP4R1L HAVANA RNA 49803 60051 . + . FI_gene_label "PPP4R1L^ENSG00000124224.17" ; ID "ABCA5--PPP4R1L^ENST00000244070.7" ; Parent "ABCA5--PPP4R1L^PPP4R1L^ENSG00000124224.17" ; exon_id "ENSE00003583250.1" ; exon_number 1 ; gene_id "ABCA5--PPP4R1L^PPP4R1L^ENSG00000124224.17" ; gene_name PPP4R1L ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000032838.12" ; havana_transcript "OTTHUMT00000079872.6" ; hgnc_id "HGNC:15755" ; level 2 ; orig_coord_info "chr20,58309419,58309439,-" ; transcript_id "ABCA5--PPP4R1L^ENST00000244070.7" ; transcript_name "PPP4R1L-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
ABL1--AL360020.1 HAVANA gene 20570 26153 . + . FI_gene_label "AL360020.1^ENSG00000286834.1" ; ID "ABL1--AL360020.1^AL360020.1^ENSG00000286834.1" ; exon_id "ENSE00003858814.1" ; exon_number 1 ; gene_id "ABL1--AL360020.1^AL360020.1^ENSG00000286834.1" ; gene_name "AL360020.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194716.1" ; havana_transcript "OTTHUMT00000521144.1" ; level 2 ; orig_coord_info "chr9,94145534,94145693,-" ; tag basic ; transcript_id "ABL1--AL360020.1^ENST00000654577.1" ; transcript_name "AL360020.1-201" ; transcript_type lncRNA
ABL1--AL360020.1 HAVANA RNA 20570 26153 . + . FI_gene_label "AL360020.1^ENSG00000286834.1" ; ID "ABL1--AL360020.1^ENST00000654577.1" ; Parent "ABL1--AL360020.1^AL360020.1^ENSG00000286834.1" ; exon_id "ENSE00003858814.1" ; exon_number 1 ; gene_id "ABL1--AL360020.1^AL360020.1^ENSG00000286834.1" ; gene_name "AL360020.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194716.1" ; havana_transcript "OTTHUMT00000521144.1" ; level 2 ; orig_coord_info "chr9,94145534,94145693,-" ; tag basic ; transcript_id "ABL1--AL360020.1^ENST00000654577.1" ; transcript_name "AL360020.1-201" ; transcript_type lncRNA
L1 and L2 created:
AC005037.1--NIF3L1 HAVANA gene 1037 2856 . + . FI_gene_label "AC005037.1^ENSG00000183308.6" ; ID "AC005037.1--NIF3L1^AC005037.1^ENSG00000183308.6" ; exon_id "ENSE00001759798.1" ; exon_number 1 ; gene_id "AC005037.1--NIF3L1^AC005037.1^ENSG00000183308.6" ; gene_name "AC005037.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154691.1" ; havana_transcript "OTTHUMT00000336587.1" ; level 2 ; orig_coord_info "chr2,200963299,200963630,+" ; tag basic ; transcript_id "AC005037.1--NIF3L1^ENST00000332935.6" ; transcript_name "AC005037.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
AC005037.1--NIF3L1 HAVANA RNA 1037 2856 . + . FI_gene_label "AC005037.1^ENSG00000183308.6" ; ID "AC005037.1--NIF3L1^ENST00000332935.6" ; Parent "AC005037.1--NIF3L1^AC005037.1^ENSG00000183308.6" ; exon_id "ENSE00001759798.1" ; exon_number 1 ; gene_id "AC005037.1--NIF3L1^AC005037.1^ENSG00000183308.6" ; gene_name "AC005037.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154691.1" ; havana_transcript "OTTHUMT00000336587.1" ; level 2 ; orig_coord_info "chr2,200963299,200963630,+" ; tag basic ; transcript_id "AC005037.1--NIF3L1^ENST00000332935.6" ; transcript_name "AC005037.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC005993.1--RGS6 HAVANA gene 1001 4837 . + . FI_gene_label "AC005993.1^ENSG00000266869.2" ; ID "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; exon_id "ENSE00002516676.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; gene_name "AC005993.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179238.4" ; havana_transcript "OTTHUMT00000445384.1" ; level 2 ; orig_coord_info "chr14,71848606,71848736,+" ; transcript_id "AC005993.1--RGS6^ENST00000555581.1" ; transcript_name "AC005993.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC005993.1--RGS6 HAVANA RNA 1001 4837 . + . FI_gene_label "AC005993.1^ENSG00000266869.2" ; ID "AC005993.1--RGS6^ENST00000555581.1" ; Parent "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; exon_id "ENSE00002516676.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; gene_name "AC005993.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179238.4" ; havana_transcript "OTTHUMT00000445384.1" ; level 2 ; orig_coord_info "chr14,71848606,71848736,+" ; transcript_id "AC005993.1--RGS6^ENST00000555581.1" ; transcript_name "AC005993.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AC010173.1--SLC16A7 HAVANA gene 1001 3453 . + . FI_gene_label "AC010173.1^ENSG00000258101.2" ; ID "AC010173.1--SLC16A7^AC010173.1^ENSG00000258101.2" ; exon_id "ENSE00002329623.1" ; exon_number 1 ; gene_id "AC010173.1--SLC16A7^AC010173.1^ENSG00000258101.2" ; gene_name "AC010173.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169512.2" ; havana_transcript "OTTHUMT00000404558.2" ; level 2 ; orig_coord_info "chr12,49264653,49264756,-" ; tag basic ; transcript_id "AC010173.1--SLC16A7^ENST00000549023.2" ; transcript_name "AC010173.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
AC010173.1--SLC16A7 HAVANA RNA 1001 3453 . + . FI_gene_label "AC010173.1^ENSG00000258101.2" ; ID "AC010173.1--SLC16A7^ENST00000549023.2" ; Parent "AC010173.1--SLC16A7^AC010173.1^ENSG00000258101.2" ; exon_id "ENSE00002329623.1" ; exon_number 1 ; gene_id "AC010173.1--SLC16A7^AC010173.1^ENSG00000258101.2" ; gene_name "AC010173.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169512.2" ; havana_transcript "OTTHUMT00000404558.2" ; level 2 ; orig_coord_info "chr12,49264653,49264756,-" ; tag basic ; transcript_id "AC010173.1--SLC16A7^ENST00000549023.2" ; transcript_name "AC010173.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC010420.1--AC112206.2 HAVANA gene 6043 11071 . + . FI_gene_label "AC112206.2^ENSG00000249364.6" ; ID "AC010420.1--AC112206.2^AC112206.2^ENSG00000249364.6" ; exon_id "ENSE00002040938.1" ; exon_number 1 ; gene_id "AC010420.1--AC112206.2^AC112206.2^ENSG00000249364.6" ; gene_name "AC112206.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162352.18" ; havana_transcript "OTTHUMT00000368615.1" ; level 2 ; orig_coord_info "chr5,67379378,67379628,+" ; transcript_id "AC010420.1--AC112206.2^ENST00000503106.5" ; transcript_name "AC112206.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
AC010420.1--AC112206.2 HAVANA RNA 6043 11071 . + . FI_gene_label "AC112206.2^ENSG00000249364.6" ; ID "AC010420.1--AC112206.2^ENST00000503106.5" ; Parent "AC010420.1--AC112206.2^AC112206.2^ENSG00000249364.6" ; exon_id "ENSE00002040938.1" ; exon_number 1 ; gene_id "AC010420.1--AC112206.2^AC112206.2^ENSG00000249364.6" ; gene_name "AC112206.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162352.18" ; havana_transcript "OTTHUMT00000368615.1" ; level 2 ; orig_coord_info "chr5,67379378,67379628,+" ; transcript_id "AC010420.1--AC112206.2^ENST00000503106.5" ; transcript_name "AC112206.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC010420.1--AC112206.2 HAVANA gene 1001 3042 . + . FI_gene_label "AC010420.1^ENSG00000251206.1" ; ID "AC010420.1--AC112206.2^AC010420.1^ENSG00000251206.1" ; exon_id "ENSE00002034240.1" ; exon_number 1 ; gene_id "AC010420.1--AC112206.2^AC010420.1^ENSG00000251206.1" ; gene_name "AC010420.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162351.1" ; havana_transcript "OTTHUMT00000368614.1" ; level 2 ; orig_coord_info "chr5,67268022,67268173,+" ; tag basic ; transcript_id "AC010420.1--AC112206.2^ENST00000515077.1" ; transcript_name "AC010420.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC010420.1--AC112206.2 HAVANA RNA 1001 3042 . + . FI_gene_label "AC010420.1^ENSG00000251206.1" ; ID "AC010420.1--AC112206.2^ENST00000515077.1" ; Parent "AC010420.1--AC112206.2^AC010420.1^ENSG00000251206.1" ; exon_id "ENSE00002034240.1" ; exon_number 1 ; gene_id "AC010420.1--AC112206.2^AC010420.1^ENSG00000251206.1" ; gene_name "AC010420.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162351.1" ; havana_transcript "OTTHUMT00000368614.1" ; level 2 ; orig_coord_info "chr5,67268022,67268173,+" ; tag basic ; transcript_id "AC010420.1--AC112206.2^ENST00000515077.1" ; transcript_name "AC010420.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC011921.1--AL445433.2 HAVANA gene 8382 14056 . + . FI_gene_label "AL445433.2^ENSG00000232825.3" ; ID "AC011921.1--AL445433.2^AL445433.2^ENSG00000232825.3" ; exon_id "ENSE00001769969.1" ; exon_number 1 ; gene_id "AC011921.1--AL445433.2^AL445433.2^ENSG00000232825.3" ; gene_name "AL445433.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010766.4" ; havana_transcript "OTTHUMT00000029675.2" ; level 2 ; orig_coord_info "chr1,99004276,99004645,+" ; tag basic ; transcript_id "AC011921.1--AL445433.2^ENST00000425113.1" ; transcript_name "AL445433.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
AC011921.1--AL445433.2 HAVANA RNA 8382 14056 . + . FI_gene_label "AL445433.2^ENSG00000232825.3" ; ID "AC011921.1--AL445433.2^ENST00000425113.1" ; Parent "AC011921.1--AL445433.2^AL445433.2^ENSG00000232825.3" ; exon_id "ENSE00001769969.1" ; exon_number 1 ; gene_id "AC011921.1--AL445433.2^AL445433.2^ENSG00000232825.3" ; gene_name "AL445433.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010766.4" ; havana_transcript "OTTHUMT00000029675.2" ; level 2 ; orig_coord_info "chr1,99004276,99004645,+" ; tag basic ; transcript_id "AC011921.1--AL445433.2^ENST00000425113.1" ; transcript_name "AL445433.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC011921.1--AL445433.2 HAVANA gene 1007 5381 . + . FI_gene_label "AC011921.1^ENSG00000259349.2" ; ID "AC011921.1--AL445433.2^AC011921.1^ENSG00000259349.2" ; exon_id "ENSE00002552622.1" ; exon_number 1 ; gene_id "AC011921.1--AL445433.2^AC011921.1^ENSG00000259349.2" ; gene_name "AC011921.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172047.2" ; havana_transcript "OTTHUMT00000416618.1" ; level 2 ; orig_coord_info "chr17,60526299,60526501,+" ; tag basic ; transcript_id "AC011921.1--AL445433.2^ENST00000558027.1" ; transcript_name "AC011921.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
AC011921.1--AL445433.2 HAVANA RNA 1007 5381 . + . FI_gene_label "AC011921.1^ENSG00000259349.2" ; ID "AC011921.1--AL445433.2^ENST00000558027.1" ; Parent "AC011921.1--AL445433.2^AC011921.1^ENSG00000259349.2" ; exon_id "ENSE00002552622.1" ; exon_number 1 ; gene_id "AC011921.1--AL445433.2^AC011921.1^ENSG00000259349.2" ; gene_name "AC011921.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172047.2" ; havana_transcript "OTTHUMT00000416618.1" ; level 2 ; orig_coord_info "chr17,60526299,60526501,+" ; tag basic ; transcript_id "AC011921.1--AL445433.2^ENST00000558027.1" ; transcript_name "AC011921.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC011921.1--DSCAM HAVANA gene 1007 5381 . + . FI_gene_label "AC011921.1^ENSG00000259349.2" ; ID "AC011921.1--DSCAM^AC011921.1^ENSG00000259349.2" ; exon_id "ENSE00002552622.1" ; exon_number 1 ; gene_id "AC011921.1--DSCAM^AC011921.1^ENSG00000259349.2" ; gene_name "AC011921.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172047.2" ; havana_transcript "OTTHUMT00000416618.1" ; level 2 ; orig_coord_info "chr17,60526299,60526501,+" ; tag basic ; transcript_id "AC011921.1--DSCAM^ENST00000558027.1" ; transcript_name "AC011921.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
AC011921.1--DSCAM HAVANA RNA 1007 5381 . + . FI_gene_label "AC011921.1^ENSG00000259349.2" ; ID "AC011921.1--DSCAM^ENST00000558027.1" ; Parent "AC011921.1--DSCAM^AC011921.1^ENSG00000259349.2" ; exon_id "ENSE00002552622.1" ; exon_number 1 ; gene_id "AC011921.1--DSCAM^AC011921.1^ENSG00000259349.2" ; gene_name "AC011921.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172047.2" ; havana_transcript "OTTHUMT00000416618.1" ; level 2 ; orig_coord_info "chr17,60526299,60526501,+" ; tag basic ; transcript_id "AC011921.1--DSCAM^ENST00000558027.1" ; transcript_name "AC011921.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC011921.1--PLPPR5 HAVANA gene 1007 5381 . + . FI_gene_label "AC011921.1^ENSG00000259349.2" ; ID "AC011921.1--PLPPR5^AC011921.1^ENSG00000259349.2" ; exon_id "ENSE00002552622.1" ; exon_number 1 ; gene_id "AC011921.1--PLPPR5^AC011921.1^ENSG00000259349.2" ; gene_name "AC011921.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172047.2" ; havana_transcript "OTTHUMT00000416618.1" ; level 2 ; orig_coord_info "chr17,60526299,60526501,+" ; tag basic ; transcript_id "AC011921.1--PLPPR5^ENST00000558027.1" ; transcript_name "AC011921.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
AC011921.1--PLPPR5 HAVANA RNA 1007 5381 . + . FI_gene_label "AC011921.1^ENSG00000259349.2" ; ID "AC011921.1--PLPPR5^ENST00000558027.1" ; Parent "AC011921.1--PLPPR5^AC011921.1^ENSG00000259349.2" ; exon_id "ENSE00002552622.1" ; exon_number 1 ; gene_id "AC011921.1--PLPPR5^AC011921.1^ENSG00000259349.2" ; gene_name "AC011921.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172047.2" ; havana_transcript "OTTHUMT00000416618.1" ; level 2 ; orig_coord_info "chr17,60526299,60526501,+" ; tag basic ; transcript_id "AC011921.1--PLPPR5^ENST00000558027.1" ; transcript_name "AC011921.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC020550.2--APBA1 HAVANA gene 1001 2134 . + . FI_gene_label "AC020550.2^ENSG00000287858.1" ; ID "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; exon_id "ENSE00003881987.1" ; exon_number 1 ; gene_id "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; gene_name "AC020550.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195766.1" ; havana_transcript "OTTHUMT00000528638.1" ; level 2 ; orig_coord_info "chr2,197640441,197640501,+" ; tag basic TAGENE ; transcript_id "AC020550.2--APBA1^ENST00000664764.1" ; transcript_name "AC020550.2-201" ; transcript_type lncRNA
AC020550.2--APBA1 HAVANA RNA 1001 2134 . + . FI_gene_label "AC020550.2^ENSG00000287858.1" ; ID "AC020550.2--APBA1^ENST00000664764.1" ; Parent "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; exon_id "ENSE00003881987.1" ; exon_number 1 ; gene_id "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; gene_name "AC020550.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195766.1" ; havana_transcript "OTTHUMT00000528638.1" ; level 2 ; orig_coord_info "chr2,197640441,197640501,+" ; tag basic TAGENE ; transcript_id "AC020550.2--APBA1^ENST00000664764.1" ; transcript_name "AC020550.2-201" ; transcript_type lncRNA
L1 and L2 created:
AC099850.1--VMP1 HAVANA gene 1001 3338 . + . FI_gene_label "AC099850.1^ENSG00000224738.1" ; ID "AC099850.1--VMP1^AC099850.1^ENSG00000224738.1" ; exon_id "ENSE00001640332.1" ; exon_number 1 ; gene_id "AC099850.1--VMP1^AC099850.1^ENSG00000224738.1" ; gene_name "AC099850.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000132079.1" ; havana_transcript "OTTHUMT00000255106.1" ; level 2 ; orig_coord_info "chr17,59106598,59107591,+" ; tag basic ; transcript_id "AC099850.1--VMP1^ENST00000451775.1" ; transcript_name "AC099850.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
AC099850.1--VMP1 HAVANA RNA 1001 3338 . + . FI_gene_label "AC099850.1^ENSG00000224738.1" ; ID "AC099850.1--VMP1^ENST00000451775.1" ; Parent "AC099850.1--VMP1^AC099850.1^ENSG00000224738.1" ; exon_id "ENSE00001640332.1" ; exon_number 1 ; gene_id "AC099850.1--VMP1^AC099850.1^ENSG00000224738.1" ; gene_name "AC099850.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000132079.1" ; havana_transcript "OTTHUMT00000255106.1" ; level 2 ; orig_coord_info "chr17,59106598,59107591,+" ; tag basic ; transcript_id "AC099850.1--VMP1^ENST00000451775.1" ; transcript_name "AC099850.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC104041.1--APBA1 HAVANA gene 3640 17052 . + . FI_gene_label "AC104041.1^ENSG00000259692.6" ; ID "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; exon_id "ENSE00002541371.1" ; exon_number 1 ; gene_id "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; gene_name "AC104041.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172170.6" ; havana_transcript "OTTHUMT00000417173.2" ; level 2 ; orig_coord_info "chr15,81995427,81995666,-" ; tag basic ; transcript_id "AC104041.1--APBA1^ENST00000559299.2" ; transcript_name "AC104041.1-204" ; transcript_support_level 4 ; transcript_type lncRNA
AC104041.1--APBA1 HAVANA RNA 3640 17052 . + . FI_gene_label "AC104041.1^ENSG00000259692.6" ; ID "AC104041.1--APBA1^ENST00000559299.2" ; Parent "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; exon_id "ENSE00002541371.1" ; exon_number 1 ; gene_id "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; gene_name "AC104041.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172170.6" ; havana_transcript "OTTHUMT00000417173.2" ; level 2 ; orig_coord_info "chr15,81995427,81995666,-" ; tag basic ; transcript_id "AC104041.1--APBA1^ENST00000559299.2" ; transcript_name "AC104041.1-204" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AGFG1--MIR5703 ENSEMBL gene 27924 27979 . + . FI_gene_label "MIR5703^ENSG00000284092.1" ; ID "AGFG1--MIR5703^MIR5703^ENSG00000284092.1" ; exon_id "ENSE00003809623.1" ; exon_number 1 ; gene_id "AGFG1--MIR5703^MIR5703^ENSG00000284092.1" ; gene_name MIR5703 ; gene_type miRNA ; hgnc_id "HGNC:43475" ; level 3 ; orig_coord_info "chr2,227472132,227472187,+" ; tag basic ; transcript_id "AGFG1--MIR5703^ENST00000640052.1" ; transcript_name "MIR5703-201" ; transcript_support_level NA ; transcript_type miRNA
AGFG1--MIR5703 ENSEMBL RNA 27924 27979 . + . FI_gene_label "MIR5703^ENSG00000284092.1" ; ID "AGFG1--MIR5703^ENST00000640052.1" ; Parent "AGFG1--MIR5703^MIR5703^ENSG00000284092.1" ; exon_id "ENSE00003809623.1" ; exon_number 1 ; gene_id "AGFG1--MIR5703^MIR5703^ENSG00000284092.1" ; gene_name MIR5703 ; gene_type miRNA ; hgnc_id "HGNC:43475" ; level 3 ; orig_coord_info "chr2,227472132,227472187,+" ; tag basic ; transcript_id "AGFG1--MIR5703^ENST00000640052.1" ; transcript_name "MIR5703-201" ; transcript_support_level NA ; transcript_type miRNA
L1 and L2 created:
AL109930.1--PTPRT HAVANA gene 1001 3724 . + . FI_gene_label "AL109930.1^ENSG00000271774.1" ; ID "AL109930.1--PTPRT^AL109930.1^ENSG00000271774.1" ; exon_id "ENSE00003677366.2" ; exon_number 1 ; gene_id "AL109930.1--PTPRT^AL109930.1^ENSG00000271774.1" ; gene_name "AL109930.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185603.1" ; havana_transcript "OTTHUMT00000470820.1" ; level 2 ; orig_coord_info "chr20,53487142,53487274,-" ; tag basic ; transcript_id "AL109930.1--PTPRT^ENST00000606932.1" ; transcript_name "AL109930.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AL109930.1--PTPRT HAVANA RNA 1001 3724 . + . FI_gene_label "AL109930.1^ENSG00000271774.1" ; ID "AL109930.1--PTPRT^ENST00000606932.1" ; Parent "AL109930.1--PTPRT^AL109930.1^ENSG00000271774.1" ; exon_id "ENSE00003677366.2" ; exon_number 1 ; gene_id "AL109930.1--PTPRT^AL109930.1^ENSG00000271774.1" ; gene_name "AL109930.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185603.1" ; havana_transcript "OTTHUMT00000470820.1" ; level 2 ; orig_coord_info "chr20,53487142,53487274,-" ; tag basic ; transcript_id "AL109930.1--PTPRT^ENST00000606932.1" ; transcript_name "AL109930.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AL121578.1--SYTL5 HAVANA gene 1001 3710 . + . FI_gene_label "AL121578.1^ENSG00000259977.1" ; ID "AL121578.1--SYTL5^AL121578.1^ENSG00000259977.1" ; exon_id "ENSE00002593651.1" ; exon_number 1 ; gene_id "AL121578.1--SYTL5^AL121578.1^ENSG00000259977.1" ; gene_name "AL121578.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000033178.1" ; havana_transcript "OTTHUMT00000080886.1" ; level 2 ; orig_coord_info "chrX,37906147,37906609,+" ; tag basic ; transcript_id "AL121578.1--SYTL5^ENST00000567273.1" ; transcript_name "AL121578.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AL121578.1--SYTL5 HAVANA RNA 1001 3710 . + . FI_gene_label "AL121578.1^ENSG00000259977.1" ; ID "AL121578.1--SYTL5^ENST00000567273.1" ; Parent "AL121578.1--SYTL5^AL121578.1^ENSG00000259977.1" ; exon_id "ENSE00002593651.1" ; exon_number 1 ; gene_id "AL121578.1--SYTL5^AL121578.1^ENSG00000259977.1" ; gene_name "AL121578.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000033178.1" ; havana_transcript "OTTHUMT00000080886.1" ; level 2 ; orig_coord_info "chrX,37906147,37906609,+" ; tag basic ; transcript_id "AL121578.1--SYTL5^ENST00000567273.1" ; transcript_name "AL121578.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AL355306.2--BCAS1 HAVANA gene 21634 24429 . + . FI_gene_label "AL355306.2^ENSG00000237480.3" ; ID "AL355306.2--BCAS1^AL355306.2^ENSG00000237480.3" ; exon_id "ENSE00001642759.1" ; exon_number 1 ; gene_id "AL355306.2--BCAS1^AL355306.2^ENSG00000237480.3" ; gene_name "AL355306.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011035.4" ; havana_transcript "OTTHUMT00000030362.1" ; level 2 ; orig_coord_info "chr1,106081161,106081424,+" ; transcript_id "AL355306.2--BCAS1^ENST00000429608.1" ; transcript_name "AL355306.2-210" ; transcript_support_level 3 ; transcript_type lncRNA
AL355306.2--BCAS1 HAVANA RNA 21634 24429 . + . FI_gene_label "AL355306.2^ENSG00000237480.3" ; ID "AL355306.2--BCAS1^ENST00000429608.1" ; Parent "AL355306.2--BCAS1^AL355306.2^ENSG00000237480.3" ; exon_id "ENSE00001642759.1" ; exon_number 1 ; gene_id "AL355306.2--BCAS1^AL355306.2^ENSG00000237480.3" ; gene_name "AL355306.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011035.4" ; havana_transcript "OTTHUMT00000030362.1" ; level 2 ; orig_coord_info "chr1,106081161,106081424,+" ; transcript_id "AL355306.2--BCAS1^ENST00000429608.1" ; transcript_name "AL355306.2-210" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AL499605.1--BCAS1 HAVANA gene 1001 1403 . + . FI_gene_label "AL499605.1^ENSG00000270342.1" ; ID "AL499605.1--BCAS1^AL499605.1^ENSG00000270342.1" ; exon_id "ENSE00003619774.1" ; exon_number 1 ; gene_id "AL499605.1--BCAS1^AL499605.1^ENSG00000270342.1" ; gene_name "AL499605.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184314.1" ; havana_transcript "OTTHUMT00000468589.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,106544342,106544744,-" ; tag pseudo_consens basic ; transcript_id "AL499605.1--BCAS1^ENST00000604628.1" ; transcript_name "AL499605.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AL499605.1--BCAS1 HAVANA RNA 1001 1403 . + . FI_gene_label "AL499605.1^ENSG00000270342.1" ; ID "AL499605.1--BCAS1^ENST00000604628.1" ; Parent "AL499605.1--BCAS1^AL499605.1^ENSG00000270342.1" ; exon_id "ENSE00003619774.1" ; exon_number 1 ; gene_id "AL499605.1--BCAS1^AL499605.1^ENSG00000270342.1" ; gene_name "AL499605.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184314.1" ; havana_transcript "OTTHUMT00000468589.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,106544342,106544744,-" ; tag pseudo_consens basic ; transcript_id "AL499605.1--BCAS1^ENST00000604628.1" ; transcript_name "AL499605.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AP001347.1--ANKRD20A11P HAVANA gene 8798 22852 . + . FI_gene_label "ANKRD20A11P^ENSG00000215559.8" ; ID "AP001347.1--ANKRD20A11P^ANKRD20A11P^ENSG00000215559.8" ; exon_id "ENSE00002284794.1" ; exon_number 1 ; gene_id "AP001347.1--ANKRD20A11P^ANKRD20A11P^ENSG00000215559.8" ; gene_name ANKRD20A11P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074237.2" ; havana_transcript "OTTHUMT00000157750.1" ; hgnc_id "HGNC:42024" ; level 2 ; orig_coord_info "chr21,13979702,13980437,-" ; tag basic ; transcript_id "AP001347.1--ANKRD20A11P^ENST00000344693.5" ; transcript_name "ANKRD20A11P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
AP001347.1--ANKRD20A11P HAVANA RNA 8798 22852 . + . FI_gene_label "ANKRD20A11P^ENSG00000215559.8" ; ID "AP001347.1--ANKRD20A11P^ENST00000344693.5" ; Parent "AP001347.1--ANKRD20A11P^ANKRD20A11P^ENSG00000215559.8" ; exon_id "ENSE00002284794.1" ; exon_number 1 ; gene_id "AP001347.1--ANKRD20A11P^ANKRD20A11P^ENSG00000215559.8" ; gene_name ANKRD20A11P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074237.2" ; havana_transcript "OTTHUMT00000157750.1" ; hgnc_id "HGNC:42024" ; level 2 ; orig_coord_info "chr21,13979702,13980437,-" ; tag basic ; transcript_id "AP001347.1--ANKRD20A11P^ENST00000344693.5" ; transcript_name "ANKRD20A11P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
AP001347.1--ANKRD20A11P HAVANA gene 1003 5797 . + . FI_gene_label "AP001347.1^ENSG00000224905.7" ; ID "AP001347.1--ANKRD20A11P^AP001347.1^ENSG00000224905.7" ; exon_id "ENSE00001608016.1" ; exon_number 1 ; gene_id "AP001347.1--ANKRD20A11P^AP001347.1^ENSG00000224905.7" ; gene_name "AP001347.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074260.3" ; havana_transcript "OTTHUMT00000157812.1" ; level 2 ; orig_coord_info "chr21,14027421,14027597,+" ; tag basic ; transcript_id "AP001347.1--ANKRD20A11P^ENST00000428809.5" ; transcript_name "AP001347.1-202" ; transcript_support_level 1 ; transcript_type lncRNA
AP001347.1--ANKRD20A11P HAVANA RNA 1003 5797 . + . FI_gene_label "AP001347.1^ENSG00000224905.7" ; ID "AP001347.1--ANKRD20A11P^ENST00000428809.5" ; Parent "AP001347.1--ANKRD20A11P^AP001347.1^ENSG00000224905.7" ; exon_id "ENSE00001608016.1" ; exon_number 1 ; gene_id "AP001347.1--ANKRD20A11P^AP001347.1^ENSG00000224905.7" ; gene_name "AP001347.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074260.3" ; havana_transcript "OTTHUMT00000157812.1" ; level 2 ; orig_coord_info "chr21,14027421,14027597,+" ; tag basic ; transcript_id "AP001347.1--ANKRD20A11P^ENST00000428809.5" ; transcript_name "AP001347.1-202" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
ATP9A--AL357558.2 HAVANA gene 39156 40412 . + . FI_gene_label "AL357558.2^ENSG00000234967.2" ; ID "ATP9A--AL357558.2^AL357558.2^ENSG00000234967.2" ; exon_id "ENSE00001757894.1" ; exon_number 1 ; gene_id "ATP9A--AL357558.2^AL357558.2^ENSG00000234967.2" ; gene_name "AL357558.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000032676.4" ; havana_transcript "OTTHUMT00000079611.1" ; level 1 ; orig_coord_info "chr20,47950799,47950924,+" ; tag exp_conf ; transcript_id "ATP9A--AL357558.2^ENST00000431915.1" ; transcript_name "AL357558.2-202" ; transcript_support_level 2 ; transcript_type lncRNA
ATP9A--AL357558.2 HAVANA RNA 39156 40412 . + . FI_gene_label "AL357558.2^ENSG00000234967.2" ; ID "ATP9A--AL357558.2^ENST00000431915.1" ; Parent "ATP9A--AL357558.2^AL357558.2^ENSG00000234967.2" ; exon_id "ENSE00001757894.1" ; exon_number 1 ; gene_id "ATP9A--AL357558.2^AL357558.2^ENSG00000234967.2" ; gene_name "AL357558.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000032676.4" ; havana_transcript "OTTHUMT00000079611.1" ; level 1 ; orig_coord_info "chr20,47950799,47950924,+" ; tag exp_conf ; transcript_id "ATP9A--AL357558.2^ENST00000431915.1" ; transcript_name "AL357558.2-202" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
ATP9A--RNU7-92P ENSEMBL gene 39154 39229 . + . FI_gene_label "RNU7-92P^ENSG00000238785.1" ; ID "ATP9A--RNU7-92P^RNU7-92P^ENSG00000238785.1" ; exon_id "ENSE00001808580.1" ; exon_number 1 ; gene_id "ATP9A--RNU7-92P^RNU7-92P^ENSG00000238785.1" ; gene_name "RNU7-92P" ; gene_type snRNA ; hgnc_id "HGNC:45626" ; level 3 ; orig_coord_info "chr20,47904348,47904423,+" ; tag basic ; transcript_id "ATP9A--RNU7-92P^ENST00000458830.1" ; transcript_name "RNU7-92P-201" ; transcript_support_level NA ; transcript_type snRNA
ATP9A--RNU7-92P ENSEMBL RNA 39154 39229 . + . FI_gene_label "RNU7-92P^ENSG00000238785.1" ; ID "ATP9A--RNU7-92P^ENST00000458830.1" ; Parent "ATP9A--RNU7-92P^RNU7-92P^ENSG00000238785.1" ; exon_id "ENSE00001808580.1" ; exon_number 1 ; gene_id "ATP9A--RNU7-92P^RNU7-92P^ENSG00000238785.1" ; gene_name "RNU7-92P" ; gene_type snRNA ; hgnc_id "HGNC:45626" ; level 3 ; orig_coord_info "chr20,47904348,47904423,+" ; tag basic ; transcript_id "ATP9A--RNU7-92P^ENST00000458830.1" ; transcript_name "RNU7-92P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
ATXN7--AL355306.2 HAVANA gene 59854 62649 . + . FI_gene_label "AL355306.2^ENSG00000237480.3" ; ID "ATXN7--AL355306.2^AL355306.2^ENSG00000237480.3" ; exon_id "ENSE00001642759.1" ; exon_number 1 ; gene_id "ATXN7--AL355306.2^AL355306.2^ENSG00000237480.3" ; gene_name "AL355306.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011035.4" ; havana_transcript "OTTHUMT00000030362.1" ; level 2 ; orig_coord_info "chr1,106081161,106081424,+" ; transcript_id "ATXN7--AL355306.2^ENST00000429608.1" ; transcript_name "AL355306.2-210" ; transcript_support_level 3 ; transcript_type lncRNA
ATXN7--AL355306.2 HAVANA RNA 59854 62649 . + . FI_gene_label "AL355306.2^ENSG00000237480.3" ; ID "ATXN7--AL355306.2^ENST00000429608.1" ; Parent "ATXN7--AL355306.2^AL355306.2^ENSG00000237480.3" ; exon_id "ENSE00001642759.1" ; exon_number 1 ; gene_id "ATXN7--AL355306.2^AL355306.2^ENSG00000237480.3" ; gene_name "AL355306.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011035.4" ; havana_transcript "OTTHUMT00000030362.1" ; level 2 ; orig_coord_info "chr1,106081161,106081424,+" ; transcript_id "ATXN7--AL355306.2^ENST00000429608.1" ; transcript_name "AL355306.2-210" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ATXN7--AL499605.1 HAVANA gene 39221 39623 . + . FI_gene_label "AL499605.1^ENSG00000270342.1" ; ID "ATXN7--AL499605.1^AL499605.1^ENSG00000270342.1" ; exon_id "ENSE00003619774.1" ; exon_number 1 ; gene_id "ATXN7--AL499605.1^AL499605.1^ENSG00000270342.1" ; gene_name "AL499605.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184314.1" ; havana_transcript "OTTHUMT00000468589.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,106544342,106544744,-" ; tag pseudo_consens basic ; transcript_id "ATXN7--AL499605.1^ENST00000604628.1" ; transcript_name "AL499605.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ATXN7--AL499605.1 HAVANA RNA 39221 39623 . + . FI_gene_label "AL499605.1^ENSG00000270342.1" ; ID "ATXN7--AL499605.1^ENST00000604628.1" ; Parent "ATXN7--AL499605.1^AL499605.1^ENSG00000270342.1" ; exon_id "ENSE00003619774.1" ; exon_number 1 ; gene_id "ATXN7--AL499605.1^AL499605.1^ENSG00000270342.1" ; gene_name "AL499605.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184314.1" ; havana_transcript "OTTHUMT00000468589.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,106544342,106544744,-" ; tag pseudo_consens basic ; transcript_id "ATXN7--AL499605.1^ENST00000604628.1" ; transcript_name "AL499605.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
BCAS1--AL136102.1 HAVANA gene 24514 27811 . + . FI_gene_label "AL136102.1^ENSG00000287107.1" ; ID "BCAS1--AL136102.1^AL136102.1^ENSG00000287107.1" ; exon_id "ENSE00003856732.1" ; exon_number 1 ; gene_id "BCAS1--AL136102.1^AL136102.1^ENSG00000287107.1" ; gene_name "AL136102.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194485.1" ; havana_transcript "OTTHUMT00000517163.1" ; level 2 ; orig_coord_info "chr20,48120269,48120422,+" ; tag basic TAGENE ; transcript_id "BCAS1--AL136102.1^ENST00000655183.1" ; transcript_name "AL136102.1-201" ; transcript_type lncRNA
BCAS1--AL136102.1 HAVANA RNA 24514 27811 . + . FI_gene_label "AL136102.1^ENSG00000287107.1" ; ID "BCAS1--AL136102.1^ENST00000655183.1" ; Parent "BCAS1--AL136102.1^AL136102.1^ENSG00000287107.1" ; exon_id "ENSE00003856732.1" ; exon_number 1 ; gene_id "BCAS1--AL136102.1^AL136102.1^ENSG00000287107.1" ; gene_name "AL136102.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194485.1" ; havana_transcript "OTTHUMT00000517163.1" ; level 2 ; orig_coord_info "chr20,48120269,48120422,+" ; tag basic TAGENE ; transcript_id "BCAS1--AL136102.1^ENST00000655183.1" ; transcript_name "AL136102.1-201" ; transcript_type lncRNA
L1 and L2 created:
BCAS1--AL139351.1 HAVANA gene 24514 24833 . + . FI_gene_label "AL139351.1^ENSG00000276923.1" ; ID "BCAS1--AL139351.1^AL139351.1^ENSG00000276923.1" ; exon_id "ENSE00003745507.1" ; exon_number 1 ; gene_id "BCAS1--AL139351.1^AL139351.1^ENSG00000276923.1" ; gene_name "AL139351.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186935.1" ; havana_transcript "OTTHUMT00000474046.1" ; level 2 ; orig_coord_info "chr20,48073869,48074188,+" ; tag basic ; transcript_id "BCAS1--AL139351.1^ENST00000622092.1" ; transcript_name "AL139351.1-201" ; transcript_support_level NA ; transcript_type lncRNA
BCAS1--AL139351.1 HAVANA RNA 24514 24833 . + . FI_gene_label "AL139351.1^ENSG00000276923.1" ; ID "BCAS1--AL139351.1^ENST00000622092.1" ; Parent "BCAS1--AL139351.1^AL139351.1^ENSG00000276923.1" ; exon_id "ENSE00003745507.1" ; exon_number 1 ; gene_id "BCAS1--AL139351.1^AL139351.1^ENSG00000276923.1" ; gene_name "AL139351.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186935.1" ; havana_transcript "OTTHUMT00000474046.1" ; level 2 ; orig_coord_info "chr20,48073869,48074188,+" ; tag basic ; transcript_id "BCAS1--AL139351.1^ENST00000622092.1" ; transcript_name "AL139351.1-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
BCAS3--AC104162.1 HAVANA gene 61151 80736 . + . FI_gene_label "AC104162.1^ENSG00000224479.6" ; ID "BCAS3--AC104162.1^AC104162.1^ENSG00000224479.6" ; exon_id "ENSE00001667740.1" ; exon_number 1 ; gene_id "BCAS3--AC104162.1^AC104162.1^ENSG00000224479.6" ; gene_name "AC104162.1" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000155878.3" ; havana_transcript "OTTHUMT00000490360.1" ; level 2 ; orig_coord_info "chr3,63805038,63805093,-" ; tag basic ; transcript_id "BCAS3--AC104162.1^ENST00000430831.6" ; transcript_name "AC104162.1-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
BCAS3--AC104162.1 HAVANA RNA 61151 80736 . + . FI_gene_label "AC104162.1^ENSG00000224479.6" ; ID "BCAS3--AC104162.1^ENST00000430831.6" ; Parent "BCAS3--AC104162.1^AC104162.1^ENSG00000224479.6" ; exon_id "ENSE00001667740.1" ; exon_number 1 ; gene_id "BCAS3--AC104162.1^AC104162.1^ENSG00000224479.6" ; gene_name "AC104162.1" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000155878.3" ; havana_transcript "OTTHUMT00000490360.1" ; level 2 ; orig_coord_info "chr3,63805038,63805093,-" ; tag basic ; transcript_id "BCAS3--AC104162.1^ENST00000430831.6" ; transcript_name "AC104162.1-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
BMP7--PRICKLE2-AS1 HAVANA gene 25651 26987 . + . FI_gene_label "PRICKLE2-AS1^ENSG00000241572.1" ; ID "BMP7--PRICKLE2-AS1^PRICKLE2-AS1^ENSG00000241572.1" ; exon_id "ENSE00001919976.1" ; exon_number 1 ; gene_id "BMP7--PRICKLE2-AS1^PRICKLE2-AS1^ENSG00000241572.1" ; gene_name "PRICKLE2-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158793.1" ; havana_transcript "OTTHUMT00000352239.1" ; hgnc_id "HGNC:40916" ; level 1 ; orig_coord_info "chr3,64099778,64099863,+" ; tag exp_conf ; transcript_id "BMP7--PRICKLE2-AS1^ENST00000460946.1" ; transcript_name "PRICKLE2-AS1-202" ; transcript_support_level 3 ; transcript_type lncRNA
BMP7--PRICKLE2-AS1 HAVANA RNA 25651 26987 . + . FI_gene_label "PRICKLE2-AS1^ENSG00000241572.1" ; ID "BMP7--PRICKLE2-AS1^ENST00000460946.1" ; Parent "BMP7--PRICKLE2-AS1^PRICKLE2-AS1^ENSG00000241572.1" ; exon_id "ENSE00001919976.1" ; exon_number 1 ; gene_id "BMP7--PRICKLE2-AS1^PRICKLE2-AS1^ENSG00000241572.1" ; gene_name "PRICKLE2-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158793.1" ; havana_transcript "OTTHUMT00000352239.1" ; hgnc_id "HGNC:40916" ; level 1 ; orig_coord_info "chr3,64099778,64099863,+" ; tag exp_conf ; transcript_id "BMP7--PRICKLE2-AS1^ENST00000460946.1" ; transcript_name "PRICKLE2-AS1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
BMP7--PRICKLE2-AS1 HAVANA gene 20500 29004 . + . FI_gene_label "PRICKLE2-AS1^ENSG00000241111.1" ; ID "BMP7--PRICKLE2-AS1^PRICKLE2-AS1^ENSG00000241111.1" ; exon_id "ENSE00001939493.1" ; exon_number 1 ; gene_id "BMP7--PRICKLE2-AS1^PRICKLE2-AS1^ENSG00000241111.1" ; gene_name "PRICKLE2-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158788.1" ; havana_transcript "OTTHUMT00000352218.1" ; level 2 ; orig_coord_info "chr3,64067964,64068161,+" ; tag basic ; transcript_id "BMP7--PRICKLE2-AS1^ENST00000482609.1" ; transcript_name "PRICKLE2-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
BMP7--PRICKLE2-AS1 HAVANA RNA 20500 29004 . + . FI_gene_label "PRICKLE2-AS1^ENSG00000241111.1" ; ID "BMP7--PRICKLE2-AS1^ENST00000482609.1" ; Parent "BMP7--PRICKLE2-AS1^PRICKLE2-AS1^ENSG00000241111.1" ; exon_id "ENSE00001939493.1" ; exon_number 1 ; gene_id "BMP7--PRICKLE2-AS1^PRICKLE2-AS1^ENSG00000241111.1" ; gene_name "PRICKLE2-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158788.1" ; havana_transcript "OTTHUMT00000352218.1" ; level 2 ; orig_coord_info "chr3,64067964,64068161,+" ; tag basic ; transcript_id "BMP7--PRICKLE2-AS1^ENST00000482609.1" ; transcript_name "PRICKLE2-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
CD180--AC112206.2 HAVANA gene 11669 16697 . + . FI_gene_label "AC112206.2^ENSG00000249364.6" ; ID "CD180--AC112206.2^AC112206.2^ENSG00000249364.6" ; exon_id "ENSE00002040938.1" ; exon_number 1 ; gene_id "CD180--AC112206.2^AC112206.2^ENSG00000249364.6" ; gene_name "AC112206.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162352.18" ; havana_transcript "OTTHUMT00000368615.1" ; level 2 ; orig_coord_info "chr5,67379378,67379628,+" ; transcript_id "CD180--AC112206.2^ENST00000503106.5" ; transcript_name "AC112206.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
CD180--AC112206.2 HAVANA RNA 11669 16697 . + . FI_gene_label "AC112206.2^ENSG00000249364.6" ; ID "CD180--AC112206.2^ENST00000503106.5" ; Parent "CD180--AC112206.2^AC112206.2^ENSG00000249364.6" ; exon_id "ENSE00002040938.1" ; exon_number 1 ; gene_id "CD180--AC112206.2^AC112206.2^ENSG00000249364.6" ; gene_name "AC112206.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162352.18" ; havana_transcript "OTTHUMT00000368615.1" ; level 2 ; orig_coord_info "chr5,67379378,67379628,+" ; transcript_id "CD180--AC112206.2^ENST00000503106.5" ; transcript_name "AC112206.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
CHEK2--Z93930.2 HAVANA gene 27625 32498 . + . FI_gene_label "Z93930.2^ENSG00000226471.6" ; ID "CHEK2--Z93930.2^Z93930.2^ENSG00000226471.6" ; exon_id "ENSE00001783358.1" ; exon_number 1 ; gene_id "CHEK2--Z93930.2^Z93930.2^ENSG00000226471.6" ; gene_name "Z93930.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000151093.2" ; havana_transcript "OTTHUMT00000321271.1" ; level 2 ; orig_coord_info "chr22,28800704,28800737,+" ; tag basic ; transcript_id "CHEK2--Z93930.2^ENST00000418292.1" ; transcript_name "Z93930.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
CHEK2--Z93930.2 HAVANA RNA 27625 32498 . + . FI_gene_label "Z93930.2^ENSG00000226471.6" ; ID "CHEK2--Z93930.2^ENST00000418292.1" ; Parent "CHEK2--Z93930.2^Z93930.2^ENSG00000226471.6" ; exon_id "ENSE00001783358.1" ; exon_number 1 ; gene_id "CHEK2--Z93930.2^Z93930.2^ENSG00000226471.6" ; gene_name "Z93930.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000151093.2" ; havana_transcript "OTTHUMT00000321271.1" ; level 2 ; orig_coord_info "chr22,28800704,28800737,+" ; tag basic ; transcript_id "CHEK2--Z93930.2^ENST00000418292.1" ; transcript_name "Z93930.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
DDX42--RN7SKP33 ENSEMBL gene 25340 25679 . + . FI_gene_label "RN7SKP33^ENSG00000222874.1" ; ID "DDX42--RN7SKP33^RN7SKP33^ENSG00000222874.1" ; exon_id "ENSE00001590760.1" ; exon_number 1 ; gene_id "DDX42--RN7SKP33^RN7SKP33^ENSG00000222874.1" ; gene_name RN7SKP33 ; gene_type misc_RNA ; hgnc_id "HGNC:45757" ; level 3 ; orig_coord_info "chr20,46859333,46859672,+" ; tag basic ; transcript_id "DDX42--RN7SKP33^ENST00000410942.1" ; transcript_name "RN7SKP33-201" ; transcript_support_level NA ; transcript_type misc_RNA
DDX42--RN7SKP33 ENSEMBL RNA 25340 25679 . + . FI_gene_label "RN7SKP33^ENSG00000222874.1" ; ID "DDX42--RN7SKP33^ENST00000410942.1" ; Parent "DDX42--RN7SKP33^RN7SKP33^ENSG00000222874.1" ; exon_id "ENSE00001590760.1" ; exon_number 1 ; gene_id "DDX42--RN7SKP33^RN7SKP33^ENSG00000222874.1" ; gene_name RN7SKP33 ; gene_type misc_RNA ; hgnc_id "HGNC:45757" ; level 3 ; orig_coord_info "chr20,46859333,46859672,+" ; tag basic ; transcript_id "DDX42--RN7SKP33^ENST00000410942.1" ; transcript_name "RN7SKP33-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
DHX30--AP001961.1 HAVANA gene 26844 30145 . + . FI_gene_label "AP001961.1^ENSG00000249710.1" ; ID "DHX30--AP001961.1^AP001961.1^ENSG00000249710.1" ; exon_id "ENSE00002046661.1" ; exon_number 1 ; gene_id "DHX30--AP001961.1^AP001961.1^ENSG00000249710.1" ; gene_name "AP001961.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000161023.1" ; havana_transcript "OTTHUMT00000363433.1" ; level 2 ; orig_coord_info "chr4,100190033,100190074,+" ; tag basic ; transcript_id "DHX30--AP001961.1^ENST00000515782.1" ; transcript_name "AP001961.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
DHX30--AP001961.1 HAVANA RNA 26844 30145 . + . FI_gene_label "AP001961.1^ENSG00000249710.1" ; ID "DHX30--AP001961.1^ENST00000515782.1" ; Parent "DHX30--AP001961.1^AP001961.1^ENSG00000249710.1" ; exon_id "ENSE00002046661.1" ; exon_number 1 ; gene_id "DHX30--AP001961.1^AP001961.1^ENSG00000249710.1" ; gene_name "AP001961.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000161023.1" ; havana_transcript "OTTHUMT00000363433.1" ; level 2 ; orig_coord_info "chr4,100190033,100190074,+" ; tag basic ; transcript_id "DHX30--AP001961.1^ENST00000515782.1" ; transcript_name "AP001961.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
DSCAM--AC011921.1 HAVANA gene 43976 48350 . + . FI_gene_label "AC011921.1^ENSG00000259349.2" ; ID "DSCAM--AC011921.1^AC011921.1^ENSG00000259349.2" ; exon_id "ENSE00002552622.1" ; exon_number 1 ; gene_id "DSCAM--AC011921.1^AC011921.1^ENSG00000259349.2" ; gene_name "AC011921.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172047.2" ; havana_transcript "OTTHUMT00000416618.1" ; level 2 ; orig_coord_info "chr17,60526299,60526501,+" ; tag basic ; transcript_id "DSCAM--AC011921.1^ENST00000558027.1" ; transcript_name "AC011921.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
DSCAM--AC011921.1 HAVANA RNA 43976 48350 . + . FI_gene_label "AC011921.1^ENSG00000259349.2" ; ID "DSCAM--AC011921.1^ENST00000558027.1" ; Parent "DSCAM--AC011921.1^AC011921.1^ENSG00000259349.2" ; exon_id "ENSE00002552622.1" ; exon_number 1 ; gene_id "DSCAM--AC011921.1^AC011921.1^ENSG00000259349.2" ; gene_name "AC011921.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172047.2" ; havana_transcript "OTTHUMT00000416618.1" ; level 2 ; orig_coord_info "chr17,60526299,60526501,+" ; tag basic ; transcript_id "DSCAM--AC011921.1^ENST00000558027.1" ; transcript_name "AC011921.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
ELP2--FP236383.3 HAVANA gene 33659 40254 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "ELP2--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "ELP2--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "ELP2--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
ELP2--FP236383.3 HAVANA RNA 33659 40254 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "ELP2--FP236383.3^ENST00000623860.3" ; Parent "ELP2--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "ELP2--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "ELP2--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
FBRSL1--AC079031.2 HAVANA gene 27676 28290 . + . FI_gene_label "AC079031.2^ENSG00000256875.2" ; ID "FBRSL1--AC079031.2^AC079031.2^ENSG00000256875.2" ; exon_id "ENSE00002258826.2" ; exon_number 1 ; gene_id "FBRSL1--AC079031.2^AC079031.2^ENSG00000256875.2" ; gene_name "AC079031.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167990.2" ; havana_transcript "OTTHUMT00000397403.2" ; level 2 ; orig_coord_info "chr12,132462242,132462856,+" ; tag basic ; transcript_id "FBRSL1--AC079031.2^ENST00000537742.2" ; transcript_name "AC079031.2-201" ; transcript_support_level NA ; transcript_type lncRNA
FBRSL1--AC079031.2 HAVANA RNA 27676 28290 . + . FI_gene_label "AC079031.2^ENSG00000256875.2" ; ID "FBRSL1--AC079031.2^ENST00000537742.2" ; Parent "FBRSL1--AC079031.2^AC079031.2^ENSG00000256875.2" ; exon_id "ENSE00002258826.2" ; exon_number 1 ; gene_id "FBRSL1--AC079031.2^AC079031.2^ENSG00000256875.2" ; gene_name "AC079031.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167990.2" ; havana_transcript "OTTHUMT00000397403.2" ; level 2 ; orig_coord_info "chr12,132462242,132462856,+" ; tag basic ; transcript_id "FBRSL1--AC079031.2^ENST00000537742.2" ; transcript_name "AC079031.2-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
GRHL2--AP001207.3 HAVANA gene 24555 26045 . + . FI_gene_label "AP001207.3^ENSG00000254024.1" ; ID "GRHL2--AP001207.3^AP001207.3^ENSG00000254024.1" ; exon_id "ENSE00002127949.1" ; exon_number 1 ; gene_id "GRHL2--AP001207.3^AP001207.3^ENSG00000254024.1" ; gene_name "AP001207.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164833.1" ; havana_transcript "OTTHUMT00000380527.1" ; level 2 ; orig_coord_info "chr8,101492450,101492499,-" ; tag basic ; transcript_id "GRHL2--AP001207.3^ENST00000520268.1" ; transcript_name "AP001207.3-201" ; transcript_support_level 3 ; transcript_type lncRNA
GRHL2--AP001207.3 HAVANA RNA 24555 26045 . + . FI_gene_label "AP001207.3^ENSG00000254024.1" ; ID "GRHL2--AP001207.3^ENST00000520268.1" ; Parent "GRHL2--AP001207.3^AP001207.3^ENSG00000254024.1" ; exon_id "ENSE00002127949.1" ; exon_number 1 ; gene_id "GRHL2--AP001207.3^AP001207.3^ENSG00000254024.1" ; gene_name "AP001207.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164833.1" ; havana_transcript "OTTHUMT00000380527.1" ; level 2 ; orig_coord_info "chr8,101492450,101492499,-" ; tag basic ; transcript_id "GRHL2--AP001207.3^ENST00000520268.1" ; transcript_name "AP001207.3-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
GUSBP13--NAIP HAVANA gene 1001 5633 . + . FI_gene_label "GUSBP13^ENSG00000198237.8" ; ID "GUSBP13--NAIP^GUSBP13^ENSG00000198237.8" ; exon_id "ENSE00002091111.1" ; exon_number 1 ; gene_id "GUSBP13--NAIP^GUSBP13^ENSG00000198237.8" ; gene_name GUSBP13 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000164581.1" ; havana_transcript "OTTHUMT00000379319.1" ; hgnc_id "HGNC:54495" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr5,69875271,69875319,+" ; tag basic ; transcript_id "GUSBP13--NAIP^ENST00000506490.2" ; transcript_name "GUSBP13-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GUSBP13--NAIP HAVANA RNA 1001 5633 . + . FI_gene_label "GUSBP13^ENSG00000198237.8" ; ID "GUSBP13--NAIP^ENST00000506490.2" ; Parent "GUSBP13--NAIP^GUSBP13^ENSG00000198237.8" ; exon_id "ENSE00002091111.1" ; exon_number 1 ; gene_id "GUSBP13--NAIP^GUSBP13^ENSG00000198237.8" ; gene_name GUSBP13 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000164581.1" ; havana_transcript "OTTHUMT00000379319.1" ; hgnc_id "HGNC:54495" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr5,69875271,69875319,+" ; tag basic ; transcript_id "GUSBP13--NAIP^ENST00000506490.2" ; transcript_name "GUSBP13-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
HGSNAT--AC118650.1 ENSEMBL gene 28947 29035 . + . FI_gene_label "AC118650.1^ENSG00000276685.1" ; ID "HGSNAT--AC118650.1^AC118650.1^ENSG00000276685.1" ; exon_id "ENSE00003715315.1" ; exon_number 1 ; gene_id "HGSNAT--AC118650.1^AC118650.1^ENSG00000276685.1" ; gene_name "AC118650.1" ; gene_type misc_RNA ; level 3 ; orig_coord_info "chr8,46028804,46028892,-" ; tag basic ; transcript_id "HGSNAT--AC118650.1^ENST00000618609.1" ; transcript_name "AC118650.1-201" ; transcript_support_level NA ; transcript_type misc_RNA
HGSNAT--AC118650.1 ENSEMBL RNA 28947 29035 . + . FI_gene_label "AC118650.1^ENSG00000276685.1" ; ID "HGSNAT--AC118650.1^ENST00000618609.1" ; Parent "HGSNAT--AC118650.1^AC118650.1^ENSG00000276685.1" ; exon_id "ENSE00003715315.1" ; exon_number 1 ; gene_id "HGSNAT--AC118650.1^AC118650.1^ENSG00000276685.1" ; gene_name "AC118650.1" ; gene_type misc_RNA ; level 3 ; orig_coord_info "chr8,46028804,46028892,-" ; tag basic ; transcript_id "HGSNAT--AC118650.1^ENST00000618609.1" ; transcript_name "AC118650.1-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
HGSNAT--AC139365.1 HAVANA gene 28947 29268 . + . FI_gene_label "AC139365.1^ENSG00000253198.1" ; ID "HGSNAT--AC139365.1^AC139365.1^ENSG00000253198.1" ; exon_id "ENSE00002120320.1" ; exon_number 1 ; gene_id "HGSNAT--AC139365.1^AC139365.1^ENSG00000253198.1" ; gene_name "AC139365.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164120.1" ; havana_transcript "OTTHUMT00000377321.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,43674270,43674591,-" ; tag pseudo_consens basic ; transcript_id "HGSNAT--AC139365.1^ENST00000519417.1" ; transcript_name "AC139365.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
HGSNAT--AC139365.1 HAVANA RNA 28947 29268 . + . FI_gene_label "AC139365.1^ENSG00000253198.1" ; ID "HGSNAT--AC139365.1^ENST00000519417.1" ; Parent "HGSNAT--AC139365.1^AC139365.1^ENSG00000253198.1" ; exon_id "ENSE00002120320.1" ; exon_number 1 ; gene_id "HGSNAT--AC139365.1^AC139365.1^ENSG00000253198.1" ; gene_name "AC139365.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164120.1" ; havana_transcript "OTTHUMT00000377321.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,43674270,43674591,-" ; tag pseudo_consens basic ; transcript_id "HGSNAT--AC139365.1^ENST00000519417.1" ; transcript_name "AC139365.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
HOOK3--AC024153.1 HAVANA gene 41655 42019 . + . FI_gene_label "AC024153.1^ENSG00000270807.1" ; ID "HOOK3--AC024153.1^AC024153.1^ENSG00000270807.1" ; exon_id "ENSE00003643629.1" ; exon_number 1 ; gene_id "HOOK3--AC024153.1^AC024153.1^ENSG00000270807.1" ; gene_name "AC024153.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184762.1" ; havana_transcript "OTTHUMT00000469160.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,33717853,33718217,+" ; tag pseudo_consens basic ; transcript_id "HOOK3--AC024153.1^ENST00000603103.1" ; transcript_name "AC024153.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
HOOK3--AC024153.1 HAVANA RNA 41655 42019 . + . FI_gene_label "AC024153.1^ENSG00000270807.1" ; ID "HOOK3--AC024153.1^ENST00000603103.1" ; Parent "HOOK3--AC024153.1^AC024153.1^ENSG00000270807.1" ; exon_id "ENSE00003643629.1" ; exon_number 1 ; gene_id "HOOK3--AC024153.1^AC024153.1^ENSG00000270807.1" ; gene_name "AC024153.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184762.1" ; havana_transcript "OTTHUMT00000469160.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,33717853,33718217,+" ; tag pseudo_consens basic ; transcript_id "HOOK3--AC024153.1^ENST00000603103.1" ; transcript_name "AC024153.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
HOOK3--RNU6-472P ENSEMBL gene 41655 41761 . + . FI_gene_label "RNU6-472P^ENSG00000207026.1" ; ID "HOOK3--RNU6-472P^RNU6-472P^ENSG00000207026.1" ; exon_id "ENSE00001806827.1" ; exon_number 1 ; gene_id "HOOK3--RNU6-472P^RNU6-472P^ENSG00000207026.1" ; gene_name "RNU6-472P" ; gene_type snRNA ; hgnc_id "HGNC:47435" ; level 3 ; orig_coord_info "chr12,33923374,33923480,-" ; tag basic ; transcript_id "HOOK3--RNU6-472P^ENST00000384299.1" ; transcript_name "RNU6-472P-201" ; transcript_support_level NA ; transcript_type snRNA
HOOK3--RNU6-472P ENSEMBL RNA 41655 41761 . + . FI_gene_label "RNU6-472P^ENSG00000207026.1" ; ID "HOOK3--RNU6-472P^ENST00000384299.1" ; Parent "HOOK3--RNU6-472P^RNU6-472P^ENSG00000207026.1" ; exon_id "ENSE00001806827.1" ; exon_number 1 ; gene_id "HOOK3--RNU6-472P^RNU6-472P^ENSG00000207026.1" ; gene_name "RNU6-472P" ; gene_type snRNA ; hgnc_id "HGNC:47435" ; level 3 ; orig_coord_info "chr12,33923374,33923480,-" ; tag basic ; transcript_id "HOOK3--RNU6-472P^ENST00000384299.1" ; transcript_name "RNU6-472P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
KANK1--LINC01242 HAVANA gene 32606 36774 . + . FI_gene_label "LINC01242^ENSG00000280683.1" ; ID "KANK1--LINC01242^LINC01242^ENSG00000280683.1" ; exon_id "ENSE00003768361.1" ; exon_number 1 ; gene_id "KANK1--LINC01242^LINC01242^ENSG00000280683.1" ; gene_name LINC01242 ; gene_type lncRNA ; havana_gene "OTTHUMG00000189587.2" ; havana_transcript "OTTHUMT00000480016.2" ; hgnc_id "HGNC:49810" ; level 2 ; orig_coord_info "chr9,30574383,30575012,-" ; tag basic ; transcript_id "KANK1--LINC01242^ENST00000629369.1" ; transcript_name "LINC01242-201" ; transcript_support_level 1 ; transcript_type lncRNA
KANK1--LINC01242 HAVANA RNA 32606 36774 . + . FI_gene_label "LINC01242^ENSG00000280683.1" ; ID "KANK1--LINC01242^ENST00000629369.1" ; Parent "KANK1--LINC01242^LINC01242^ENSG00000280683.1" ; exon_id "ENSE00003768361.1" ; exon_number 1 ; gene_id "KANK1--LINC01242^LINC01242^ENSG00000280683.1" ; gene_name LINC01242 ; gene_type lncRNA ; havana_gene "OTTHUMG00000189587.2" ; havana_transcript "OTTHUMT00000480016.2" ; hgnc_id "HGNC:49810" ; level 2 ; orig_coord_info "chr9,30574383,30575012,-" ; tag basic ; transcript_id "KANK1--LINC01242^ENST00000629369.1" ; transcript_name "LINC01242-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
KANK1--ME2P1 HAVANA gene 32606 34575 . + . FI_gene_label "ME2P1^ENSG00000230097.2" ; ID "KANK1--ME2P1^ME2P1^ENSG00000230097.2" ; exon_id "ENSE00001720203.2" ; exon_number 1 ; gene_id "KANK1--ME2P1^ME2P1^ENSG00000230097.2" ; gene_name ME2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000019724.2" ; havana_transcript "OTTHUMT00000051982.2" ; hgnc_id "HGNC:49809" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,29824742,29826711,-" ; tag pseudo_consens basic ; transcript_id "KANK1--ME2P1^ENST00000426028.2" ; transcript_name "ME2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
KANK1--ME2P1 HAVANA RNA 32606 34575 . + . FI_gene_label "ME2P1^ENSG00000230097.2" ; ID "KANK1--ME2P1^ENST00000426028.2" ; Parent "KANK1--ME2P1^ME2P1^ENSG00000230097.2" ; exon_id "ENSE00001720203.2" ; exon_number 1 ; gene_id "KANK1--ME2P1^ME2P1^ENSG00000230097.2" ; gene_name ME2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000019724.2" ; havana_transcript "OTTHUMT00000051982.2" ; hgnc_id "HGNC:49809" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,29824742,29826711,-" ; tag pseudo_consens basic ; transcript_id "KANK1--ME2P1^ENST00000426028.2" ; transcript_name "ME2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
LEMD3--AC002375.1 HAVANA gene 17320 18900 . + . FI_gene_label "AC002375.1^ENSG00000257268.1" ; ID "LEMD3--AC002375.1^AC002375.1^ENSG00000257268.1" ; exon_id "ENSE00002339068.1" ; exon_number 1 ; gene_id "LEMD3--AC002375.1^AC002375.1^ENSG00000257268.1" ; gene_name "AC002375.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169533.1" ; havana_transcript "OTTHUMT00000404670.1" ; level 2 ; orig_coord_info "chr12,110831779,110831994,+" ; tag basic ; transcript_id "LEMD3--AC002375.1^ENST00000551161.1" ; transcript_name "AC002375.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
LEMD3--AC002375.1 HAVANA RNA 17320 18900 . + . FI_gene_label "AC002375.1^ENSG00000257268.1" ; ID "LEMD3--AC002375.1^ENST00000551161.1" ; Parent "LEMD3--AC002375.1^AC002375.1^ENSG00000257268.1" ; exon_id "ENSE00002339068.1" ; exon_number 1 ; gene_id "LEMD3--AC002375.1^AC002375.1^ENSG00000257268.1" ; gene_name "AC002375.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169533.1" ; havana_transcript "OTTHUMT00000404670.1" ; level 2 ; orig_coord_info "chr12,110831779,110831994,+" ; tag basic ; transcript_id "LEMD3--AC002375.1^ENST00000551161.1" ; transcript_name "AC002375.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
MIR4713HG--GLDN HAVANA RNA 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^ENST00000559909.1" ; Parent "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
MTAP--CDKN2B-AS1 HAVANA gene 30652 68565 . + . FI_gene_label "CDKN2B-AS1^ENSG00000240498.9" ; ID "MTAP--CDKN2B-AS1^CDKN2B-AS1^ENSG00000240498.9" ; exon_id "ENSE00002699013.1" ; exon_number 1 ; gene_id "MTAP--CDKN2B-AS1^CDKN2B-AS1^ENSG00000240498.9" ; gene_name "CDKN2B-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019689.7" ; havana_transcript "OTTHUMT00000502865.1" ; hgnc_id "HGNC:34341" ; level 2 ; orig_coord_info "chr9,21995095,21995161,+" ; tag RNA_Seq_supported_only ; transcript_id "MTAP--CDKN2B-AS1^ENST00000421632.2" ; transcript_name "CDKN2B-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
MTAP--CDKN2B-AS1 HAVANA RNA 30652 68565 . + . FI_gene_label "CDKN2B-AS1^ENSG00000240498.9" ; ID "MTAP--CDKN2B-AS1^ENST00000421632.2" ; Parent "MTAP--CDKN2B-AS1^CDKN2B-AS1^ENSG00000240498.9" ; exon_id "ENSE00002699013.1" ; exon_number 1 ; gene_id "MTAP--CDKN2B-AS1^CDKN2B-AS1^ENSG00000240498.9" ; gene_name "CDKN2B-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019689.7" ; havana_transcript "OTTHUMT00000502865.1" ; hgnc_id "HGNC:34341" ; level 2 ; orig_coord_info "chr9,21995095,21995161,+" ; tag RNA_Seq_supported_only ; transcript_id "MTAP--CDKN2B-AS1^ENST00000421632.2" ; transcript_name "CDKN2B-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
NAV1--AL691482.2 HAVANA gene 48290 48373 . + . FI_gene_label "AL691482.2^ENSG00000235811.1" ; ID "NAV1--AL691482.2^AL691482.2^ENSG00000235811.1" ; exon_id "ENSE00001713783.1" ; exon_number 1 ; gene_id "NAV1--AL691482.2^AL691482.2^ENSG00000235811.1" ; gene_name "AL691482.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000035926.1" ; havana_transcript "OTTHUMT00000087498.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr1,202039851,202039934,+" ; tag basic ; transcript_id "NAV1--AL691482.2^ENST00000457453.1" ; transcript_name "AL691482.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NAV1--AL691482.2 HAVANA RNA 48290 48373 . + . FI_gene_label "AL691482.2^ENSG00000235811.1" ; ID "NAV1--AL691482.2^ENST00000457453.1" ; Parent "NAV1--AL691482.2^AL691482.2^ENSG00000235811.1" ; exon_id "ENSE00001713783.1" ; exon_number 1 ; gene_id "NAV1--AL691482.2^AL691482.2^ENSG00000235811.1" ; gene_name "AL691482.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000035926.1" ; havana_transcript "OTTHUMT00000087498.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr1,202039851,202039934,+" ; tag basic ; transcript_id "NAV1--AL691482.2^ENST00000457453.1" ; transcript_name "AL691482.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NCOA3--AL499605.1 HAVANA gene 29502 29904 . + . FI_gene_label "AL499605.1^ENSG00000270342.1" ; ID "NCOA3--AL499605.1^AL499605.1^ENSG00000270342.1" ; exon_id "ENSE00003619774.1" ; exon_number 1 ; gene_id "NCOA3--AL499605.1^AL499605.1^ENSG00000270342.1" ; gene_name "AL499605.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184314.1" ; havana_transcript "OTTHUMT00000468589.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,106544342,106544744,-" ; tag pseudo_consens basic ; transcript_id "NCOA3--AL499605.1^ENST00000604628.1" ; transcript_name "AL499605.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NCOA3--AL499605.1 HAVANA RNA 29502 29904 . + . FI_gene_label "AL499605.1^ENSG00000270342.1" ; ID "NCOA3--AL499605.1^ENST00000604628.1" ; Parent "NCOA3--AL499605.1^AL499605.1^ENSG00000270342.1" ; exon_id "ENSE00003619774.1" ; exon_number 1 ; gene_id "NCOA3--AL499605.1^AL499605.1^ENSG00000270342.1" ; gene_name "AL499605.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184314.1" ; havana_transcript "OTTHUMT00000468589.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,106544342,106544744,-" ; tag pseudo_consens basic ; transcript_id "NCOA3--AL499605.1^ENST00000604628.1" ; transcript_name "AL499605.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NCOA3--AL596327.1 HAVANA gene 29502 29714 . + . FI_gene_label "AL596327.1^ENSG00000270976.1" ; ID "NCOA3--AL596327.1^AL596327.1^ENSG00000270976.1" ; exon_id "ENSE00003558916.1" ; exon_number 1 ; gene_id "NCOA3--AL596327.1^AL596327.1^ENSG00000270976.1" ; gene_name "AL596327.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184318.1" ; havana_transcript "OTTHUMT00000468593.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr1,106780223,106780435,+" ; tag basic ; transcript_id "NCOA3--AL596327.1^ENST00000603629.1" ; transcript_name "AL596327.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NCOA3--AL596327.1 HAVANA RNA 29502 29714 . + . FI_gene_label "AL596327.1^ENSG00000270976.1" ; ID "NCOA3--AL596327.1^ENST00000603629.1" ; Parent "NCOA3--AL596327.1^AL596327.1^ENSG00000270976.1" ; exon_id "ENSE00003558916.1" ; exon_number 1 ; gene_id "NCOA3--AL596327.1^AL596327.1^ENSG00000270976.1" ; gene_name "AL596327.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184318.1" ; havana_transcript "OTTHUMT00000468593.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr1,106780223,106780435,+" ; tag basic ; transcript_id "NCOA3--AL596327.1^ENST00000603629.1" ; transcript_name "AL596327.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NFATC2--AP000550.3 HAVANA gene 22678 23056 . + . FI_gene_label "AP000550.3^ENSG00000283145.1" ; ID "NFATC2--AP000550.3^AP000550.3^ENSG00000283145.1" ; exon_id "ENSE00003797435.1" ; exon_number 1 ; gene_id "NFATC2--AP000550.3^AP000550.3^ENSG00000283145.1" ; gene_name "AP000550.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000191745.1" ; havana_transcript "OTTHUMT00000489858.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr22,21228760,21229138,-" ; tag basic ; transcript_id "NFATC2--AP000550.3^ENST00000637734.1" ; transcript_name "AP000550.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
NFATC2--AP000550.3 HAVANA RNA 22678 23056 . + . FI_gene_label "AP000550.3^ENSG00000283145.1" ; ID "NFATC2--AP000550.3^ENST00000637734.1" ; Parent "NFATC2--AP000550.3^AP000550.3^ENSG00000283145.1" ; exon_id "ENSE00003797435.1" ; exon_number 1 ; gene_id "NFATC2--AP000550.3^AP000550.3^ENSG00000283145.1" ; gene_name "AP000550.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000191745.1" ; havana_transcript "OTTHUMT00000489858.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr22,21228760,21229138,-" ; tag basic ; transcript_id "NFATC2--AP000550.3^ENST00000637734.1" ; transcript_name "AP000550.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
PDE8A--SCAND2P HAVANA gene 31752 46830 . + . FI_gene_label "SCAND2P^ENSG00000176700.20" ; ID "PDE8A--SCAND2P^SCAND2P^ENSG00000176700.20" ; exon_id "ENSE00002097271.2" ; exon_number 1 ; gene_id "PDE8A--SCAND2P^SCAND2P^ENSG00000176700.20" ; gene_name SCAND2P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000166569.6" ; havana_transcript "OTTHUMT00000308966.4" ; hgnc_id "HGNC:10567" ; level 2 ; orig_coord_info "chr15,84631451,84632298,+" ; tag basic ; transcript_id "PDE8A--SCAND2P^ENST00000348993.9" ; transcript_name "SCAND2P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
PDE8A--SCAND2P HAVANA RNA 31752 46830 . + . FI_gene_label "SCAND2P^ENSG00000176700.20" ; ID "PDE8A--SCAND2P^ENST00000348993.9" ; Parent "PDE8A--SCAND2P^SCAND2P^ENSG00000176700.20" ; exon_id "ENSE00002097271.2" ; exon_number 1 ; gene_id "PDE8A--SCAND2P^SCAND2P^ENSG00000176700.20" ; gene_name SCAND2P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000166569.6" ; havana_transcript "OTTHUMT00000308966.4" ; hgnc_id "HGNC:10567" ; level 2 ; orig_coord_info "chr15,84631451,84632298,+" ; tag basic ; transcript_id "PDE8A--SCAND2P^ENST00000348993.9" ; transcript_name "SCAND2P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
PKP2--ASS1P14 HAVANA gene 23150 24382 . + . FI_gene_label "ASS1P14^ENSG00000257316.1" ; ID "PKP2--ASS1P14^ASS1P14^ENSG00000257316.1" ; exon_id "ENSE00001698226.3" ; exon_number 1 ; gene_id "PKP2--ASS1P14^ASS1P14^ENSG00000257316.1" ; gene_name ASS1P14 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000169504.1" ; havana_transcript "OTTHUMT00000404497.1" ; hgnc_id "HGNC:764" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,32985838,32987070,+" ; tag pseudo_consens basic ; transcript_id "PKP2--ASS1P14^ENST00000553060.1" ; transcript_name "ASS1P14-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
PKP2--ASS1P14 HAVANA RNA 23150 24382 . + . FI_gene_label "ASS1P14^ENSG00000257316.1" ; ID "PKP2--ASS1P14^ENST00000553060.1" ; Parent "PKP2--ASS1P14^ASS1P14^ENSG00000257316.1" ; exon_id "ENSE00001698226.3" ; exon_number 1 ; gene_id "PKP2--ASS1P14^ASS1P14^ENSG00000257316.1" ; gene_name ASS1P14 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000169504.1" ; havana_transcript "OTTHUMT00000404497.1" ; hgnc_id "HGNC:764" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,32985838,32987070,+" ; tag pseudo_consens basic ; transcript_id "PKP2--ASS1P14^ENST00000553060.1" ; transcript_name "ASS1P14-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
PSMD6-AS2--PRICKLE2 HAVANA gene 1001 5456 . + . FI_gene_label "PSMD6-AS2^ENSG00000239653.1" ; ID "PSMD6-AS2--PRICKLE2^PSMD6-AS2^ENSG00000239653.1" ; exon_id "ENSE00001930731.1" ; exon_number 1 ; gene_id "PSMD6-AS2--PRICKLE2^PSMD6-AS2^ENSG00000239653.1" ; gene_name "PSMD6-AS2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158764.1" ; havana_transcript "OTTHUMT00000352081.1" ; hgnc_id "HGNC:44125" ; level 2 ; orig_coord_info "chr3,64004022,64006068,+" ; tag basic ; transcript_id "PSMD6-AS2--PRICKLE2^ENST00000472046.1" ; transcript_name "PSMD6-AS2-201" ; transcript_support_level 2 ; transcript_type lncRNA
PSMD6-AS2--PRICKLE2 HAVANA RNA 1001 5456 . + . FI_gene_label "PSMD6-AS2^ENSG00000239653.1" ; ID "PSMD6-AS2--PRICKLE2^ENST00000472046.1" ; Parent "PSMD6-AS2--PRICKLE2^PSMD6-AS2^ENSG00000239653.1" ; exon_id "ENSE00001930731.1" ; exon_number 1 ; gene_id "PSMD6-AS2--PRICKLE2^PSMD6-AS2^ENSG00000239653.1" ; gene_name "PSMD6-AS2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158764.1" ; havana_transcript "OTTHUMT00000352081.1" ; hgnc_id "HGNC:44125" ; level 2 ; orig_coord_info "chr3,64004022,64006068,+" ; tag basic ; transcript_id "PSMD6-AS2--PRICKLE2^ENST00000472046.1" ; transcript_name "PSMD6-AS2-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
RASAL2--AL138899.1 HAVANA gene 42101 45099 . + . FI_gene_label "AL138899.1^ENSG00000176320.2" ; ID "RASAL2--AL138899.1^AL138899.1^ENSG00000176320.2" ; exon_id "ENSE00001616800.1" ; exon_number 1 ; gene_id "RASAL2--AL138899.1^AL138899.1^ENSG00000176320.2" ; gene_name "AL138899.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000022444.1" ; havana_transcript "OTTHUMT00000058352.1" ; level 2 ; orig_coord_info "chr1,158203793,158203877,-" ; tag basic ; transcript_id "RASAL2--AL138899.1^ENST00000415019.1" ; transcript_name "AL138899.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
RASAL2--AL138899.1 HAVANA RNA 42101 45099 . + . FI_gene_label "AL138899.1^ENSG00000176320.2" ; ID "RASAL2--AL138899.1^ENST00000415019.1" ; Parent "RASAL2--AL138899.1^AL138899.1^ENSG00000176320.2" ; exon_id "ENSE00001616800.1" ; exon_number 1 ; gene_id "RASAL2--AL138899.1^AL138899.1^ENSG00000176320.2" ; gene_name "AL138899.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000022444.1" ; havana_transcript "OTTHUMT00000058352.1" ; level 2 ; orig_coord_info "chr1,158203793,158203877,-" ; tag basic ; transcript_id "RASAL2--AL138899.1^ENST00000415019.1" ; transcript_name "AL138899.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
RN7SKP13--TENM3 ENSEMBL gene 1001 1244 . + . FI_gene_label "RN7SKP13^ENSG00000251742.1" ; ID "RN7SKP13--TENM3^RN7SKP13^ENSG00000251742.1" ; exon_id "ENSE00002088210.1" ; exon_number 1 ; gene_id "RN7SKP13--TENM3^RN7SKP13^ENSG00000251742.1" ; gene_name RN7SKP13 ; gene_type misc_RNA ; hgnc_id "HGNC:45737" ; level 3 ; orig_coord_info "chr4,181834865,181835108,-" ; tag basic ; transcript_id "RN7SKP13--TENM3^ENST00000515933.1" ; transcript_name "RN7SKP13-201" ; transcript_support_level NA ; transcript_type misc_RNA
RN7SKP13--TENM3 ENSEMBL RNA 1001 1244 . + . FI_gene_label "RN7SKP13^ENSG00000251742.1" ; ID "RN7SKP13--TENM3^ENST00000515933.1" ; Parent "RN7SKP13--TENM3^RN7SKP13^ENSG00000251742.1" ; exon_id "ENSE00002088210.1" ; exon_number 1 ; gene_id "RN7SKP13--TENM3^RN7SKP13^ENSG00000251742.1" ; gene_name RN7SKP13 ; gene_type misc_RNA ; hgnc_id "HGNC:45737" ; level 3 ; orig_coord_info "chr4,181834865,181835108,-" ; tag basic ; transcript_id "RN7SKP13--TENM3^ENST00000515933.1" ; transcript_name "RN7SKP13-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
ROR2--AC244669.2 HAVANA gene 24980 30021 . + . FI_gene_label "AC244669.2^ENSG00000274642.1" ; ID "ROR2--AC244669.2^AC244669.2^ENSG00000274642.1" ; exon_id "ENSE00003717368.1" ; exon_number 1 ; gene_id "ROR2--AC244669.2^AC244669.2^ENSG00000274642.1" ; gene_name "AC244669.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000185010.1" ; havana_transcript "OTTHUMT00000469432.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,120197085,120197317,+" ; tag basic ; transcript_id "ROR2--AC244669.2^ENST00000612320.1" ; transcript_name "AC244669.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
ROR2--AC244669.2 HAVANA RNA 24980 30021 . + . FI_gene_label "AC244669.2^ENSG00000274642.1" ; ID "ROR2--AC244669.2^ENST00000612320.1" ; Parent "ROR2--AC244669.2^AC244669.2^ENSG00000274642.1" ; exon_id "ENSE00003717368.1" ; exon_number 1 ; gene_id "ROR2--AC244669.2^AC244669.2^ENSG00000274642.1" ; gene_name "AC244669.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000185010.1" ; havana_transcript "OTTHUMT00000469432.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,120197085,120197317,+" ; tag basic ; transcript_id "ROR2--AC244669.2^ENST00000612320.1" ; transcript_name "AC244669.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
RSBN1--AP4B1-AS1 HAVANA gene 16717 21586 . + . FI_gene_label "AP4B1-AS1^ENSG00000226167.1" ; ID "RSBN1--AP4B1-AS1^AP4B1-AS1^ENSG00000226167.1" ; exon_id "ENSE00001744471.1" ; exon_number 1 ; gene_id "RSBN1--AP4B1-AS1^AP4B1-AS1^ENSG00000226167.1" ; gene_name "AP4B1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011941.1" ; havana_transcript "OTTHUMT00000033027.1" ; hgnc_id "HGNC:44114" ; level 2 ; orig_coord_info "chr1,113856635,113856724,+" ; tag basic ; transcript_id "RSBN1--AP4B1-AS1^ENST00000419536.1" ; transcript_name "AP4B1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
RSBN1--AP4B1-AS1 HAVANA RNA 16717 21586 . + . FI_gene_label "AP4B1-AS1^ENSG00000226167.1" ; ID "RSBN1--AP4B1-AS1^ENST00000419536.1" ; Parent "RSBN1--AP4B1-AS1^AP4B1-AS1^ENSG00000226167.1" ; exon_id "ENSE00001744471.1" ; exon_number 1 ; gene_id "RSBN1--AP4B1-AS1^AP4B1-AS1^ENSG00000226167.1" ; gene_name "AP4B1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011941.1" ; havana_transcript "OTTHUMT00000033027.1" ; hgnc_id "HGNC:44114" ; level 2 ; orig_coord_info "chr1,113856635,113856724,+" ; tag basic ; transcript_id "RSBN1--AP4B1-AS1^ENST00000419536.1" ; transcript_name "AP4B1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
SARNP--GSTP1P1 HAVANA gene 17009 17327 . + . FI_gene_label "GSTP1P1^ENSG00000257569.1" ; ID "SARNP--GSTP1P1^GSTP1P1^ENSG00000257569.1" ; exon_id "ENSE00002392544.1" ; exon_number 1 ; gene_id "SARNP--GSTP1P1^GSTP1P1^ENSG00000257569.1" ; gene_name GSTP1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000170203.1" ; havana_transcript "OTTHUMT00000407939.1" ; hgnc_id "HGNC:4640" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,55900300,55900618,+" ; tag pseudo_consens basic ; transcript_id "SARNP--GSTP1P1^ENST00000548078.1" ; transcript_name "GSTP1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SARNP--GSTP1P1 HAVANA RNA 17009 17327 . + . FI_gene_label "GSTP1P1^ENSG00000257569.1" ; ID "SARNP--GSTP1P1^ENST00000548078.1" ; Parent "SARNP--GSTP1P1^GSTP1P1^ENSG00000257569.1" ; exon_id "ENSE00002392544.1" ; exon_number 1 ; gene_id "SARNP--GSTP1P1^GSTP1P1^ENSG00000257569.1" ; gene_name GSTP1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000170203.1" ; havana_transcript "OTTHUMT00000407939.1" ; hgnc_id "HGNC:4640" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,55900300,55900618,+" ; tag pseudo_consens basic ; transcript_id "SARNP--GSTP1P1^ENST00000548078.1" ; transcript_name "GSTP1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SARNP--OLA1P3 HAVANA gene 17009 19563 . + . FI_gene_label "OLA1P3^ENSG00000257966.1" ; ID "SARNP--OLA1P3^OLA1P3^ENSG00000257966.1" ; exon_id "ENSE00002399731.1" ; exon_number 1 ; gene_id "SARNP--OLA1P3^OLA1P3^ENSG00000257966.1" ; gene_name OLA1P3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000170206.1" ; havana_transcript "OTTHUMT00000407942.1" ; hgnc_id "HGNC:45278" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,55870048,55872602,-" ; tag pseudo_consens basic ; transcript_id "SARNP--OLA1P3^ENST00000550756.1" ; transcript_name "OLA1P3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SARNP--OLA1P3 HAVANA RNA 17009 19563 . + . FI_gene_label "OLA1P3^ENSG00000257966.1" ; ID "SARNP--OLA1P3^ENST00000550756.1" ; Parent "SARNP--OLA1P3^OLA1P3^ENSG00000257966.1" ; exon_id "ENSE00002399731.1" ; exon_number 1 ; gene_id "SARNP--OLA1P3^OLA1P3^ENSG00000257966.1" ; gene_name OLA1P3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000170206.1" ; havana_transcript "OTTHUMT00000407942.1" ; hgnc_id "HGNC:45278" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,55870048,55872602,-" ; tag pseudo_consens basic ; transcript_id "SARNP--OLA1P3^ENST00000550756.1" ; transcript_name "OLA1P3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SHISA9--AC010333.1 HAVANA gene 20432 21773 . + . FI_gene_label "AC010333.1^ENSG00000259876.1" ; ID "SHISA9--AC010333.1^AC010333.1^ENSG00000259876.1" ; exon_id "ENSE00002591318.1" ; exon_number 1 ; gene_id "SHISA9--AC010333.1^AC010333.1^ENSG00000259876.1" ; gene_name "AC010333.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177166.1" ; havana_transcript "OTTHUMT00000435698.1" ; level 2 ; orig_coord_info "chr16,12557319,12557694,-" ; tag basic ; transcript_id "SHISA9--AC010333.1^ENST00000563116.1" ; transcript_name "AC010333.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
SHISA9--AC010333.1 HAVANA RNA 20432 21773 . + . FI_gene_label "AC010333.1^ENSG00000259876.1" ; ID "SHISA9--AC010333.1^ENST00000563116.1" ; Parent "SHISA9--AC010333.1^AC010333.1^ENSG00000259876.1" ; exon_id "ENSE00002591318.1" ; exon_number 1 ; gene_id "SHISA9--AC010333.1^AC010333.1^ENSG00000259876.1" ; gene_name "AC010333.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177166.1" ; havana_transcript "OTTHUMT00000435698.1" ; level 2 ; orig_coord_info "chr16,12557319,12557694,-" ; tag basic ; transcript_id "SHISA9--AC010333.1^ENST00000563116.1" ; transcript_name "AC010333.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
SHISA9--AC010333.2 HAVANA gene 20432 22129 . + . FI_gene_label "AC010333.2^ENSG00000259899.1" ; ID "SHISA9--AC010333.2^AC010333.2^ENSG00000259899.1" ; exon_id "ENSE00002630048.1" ; exon_number 1 ; gene_id "SHISA9--AC010333.2^AC010333.2^ENSG00000259899.1" ; gene_name "AC010333.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177167.1" ; havana_transcript "OTTHUMT00000435699.1" ; level 2 ; orig_coord_info "chr16,12610738,12611044,-" ; tag basic ; transcript_id "SHISA9--AC010333.2^ENST00000564505.1" ; transcript_name "AC010333.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
SHISA9--AC010333.2 HAVANA RNA 20432 22129 . + . FI_gene_label "AC010333.2^ENSG00000259899.1" ; ID "SHISA9--AC010333.2^ENST00000564505.1" ; Parent "SHISA9--AC010333.2^AC010333.2^ENSG00000259899.1" ; exon_id "ENSE00002630048.1" ; exon_number 1 ; gene_id "SHISA9--AC010333.2^AC010333.2^ENSG00000259899.1" ; gene_name "AC010333.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177167.1" ; havana_transcript "OTTHUMT00000435699.1" ; level 2 ; orig_coord_info "chr16,12610738,12611044,-" ; tag basic ; transcript_id "SHISA9--AC010333.2^ENST00000564505.1" ; transcript_name "AC010333.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
SLC25A19--RNU7-6P ENSEMBL gene 12021 12082 . + . FI_gene_label "RNU7-6P^ENSG00000252654.1" ; ID "SLC25A19--RNU7-6P^RNU7-6P^ENSG00000252654.1" ; exon_id "ENSE00002089122.1" ; exon_number 1 ; gene_id "SLC25A19--RNU7-6P^RNU7-6P^ENSG00000252654.1" ; gene_name "RNU7-6P" ; gene_type snRNA ; hgnc_id "HGNC:34102" ; level 3 ; orig_coord_info "chr20,51904969,51905030,+" ; tag basic ; transcript_id "SLC25A19--RNU7-6P^ENST00000516845.1" ; transcript_name "RNU7-6P-201" ; transcript_support_level NA ; transcript_type snRNA
SLC25A19--RNU7-6P ENSEMBL RNA 12021 12082 . + . FI_gene_label "RNU7-6P^ENSG00000252654.1" ; ID "SLC25A19--RNU7-6P^ENST00000516845.1" ; Parent "SLC25A19--RNU7-6P^RNU7-6P^ENSG00000252654.1" ; exon_id "ENSE00002089122.1" ; exon_number 1 ; gene_id "SLC25A19--RNU7-6P^RNU7-6P^ENSG00000252654.1" ; gene_name "RNU7-6P" ; gene_type snRNA ; hgnc_id "HGNC:34102" ; level 3 ; orig_coord_info "chr20,51904969,51905030,+" ; tag basic ; transcript_id "SLC25A19--RNU7-6P^ENST00000516845.1" ; transcript_name "RNU7-6P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
SLC5A4P1--OR8A1 HAVANA gene 1001 1612 . + . FI_gene_label "SLC5A4P1^ENSG00000255116.2" ; ID "SLC5A4P1--OR8A1^SLC5A4P1^ENSG00000255116.2" ; exon_id "ENSE00002146264.2" ; exon_number 1 ; gene_id "SLC5A4P1--OR8A1^SLC5A4P1^ENSG00000255116.2" ; gene_name SLC5A4P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000165976.2" ; havana_transcript "OTTHUMT00000387284.2" ; hgnc_id "HGNC:45041" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,124273970,124274581,+" ; tag pseudo_consens basic ; transcript_id "SLC5A4P1--OR8A1^ENST00000532944.2" ; transcript_name "SLC5A4P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SLC5A4P1--OR8A1 HAVANA RNA 1001 1612 . + . FI_gene_label "SLC5A4P1^ENSG00000255116.2" ; ID "SLC5A4P1--OR8A1^ENST00000532944.2" ; Parent "SLC5A4P1--OR8A1^SLC5A4P1^ENSG00000255116.2" ; exon_id "ENSE00002146264.2" ; exon_number 1 ; gene_id "SLC5A4P1--OR8A1^SLC5A4P1^ENSG00000255116.2" ; gene_name SLC5A4P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000165976.2" ; havana_transcript "OTTHUMT00000387284.2" ; hgnc_id "HGNC:45041" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,124273970,124274581,+" ; tag pseudo_consens basic ; transcript_id "SLC5A4P1--OR8A1^ENST00000532944.2" ; transcript_name "SLC5A4P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SPTLC1--AL445231.1 HAVANA gene 31737 33634 . + . FI_gene_label "AL445231.1^ENSG00000236137.1" ; ID "SPTLC1--AL445231.1^AL445231.1^ENSG00000236137.1" ; exon_id "ENSE00001795850.1" ; exon_number 1 ; gene_id "SPTLC1--AL445231.1^AL445231.1^ENSG00000236137.1" ; gene_name "AL445231.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012031.1" ; havana_transcript "OTTHUMT00000033279.1" ; level 2 ; orig_coord_info "chr1,117032390,117032521,-" ; transcript_id "SPTLC1--AL445231.1^ENST00000421254.1" ; transcript_name "AL445231.1-202" ; transcript_support_level 2 ; transcript_type lncRNA
SPTLC1--AL445231.1 HAVANA RNA 31737 33634 . + . FI_gene_label "AL445231.1^ENSG00000236137.1" ; ID "SPTLC1--AL445231.1^ENST00000421254.1" ; Parent "SPTLC1--AL445231.1^AL445231.1^ENSG00000236137.1" ; exon_id "ENSE00001795850.1" ; exon_number 1 ; gene_id "SPTLC1--AL445231.1^AL445231.1^ENSG00000236137.1" ; gene_name "AL445231.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012031.1" ; havana_transcript "OTTHUMT00000033279.1" ; level 2 ; orig_coord_info "chr1,117032390,117032521,-" ; transcript_id "SPTLC1--AL445231.1^ENST00000421254.1" ; transcript_name "AL445231.1-202" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
TENM3-AS1--TENM3 HAVANA gene 1784 4600 . + . FI_gene_label "TENM3-AS1^ENSG00000177822.8" ; ID "TENM3-AS1--TENM3^TENM3-AS1^ENSG00000177822.8" ; exon_id "ENSE00001234648.1" ; exon_number 1 ; gene_id "TENM3-AS1--TENM3^TENM3-AS1^ENSG00000177822.8" ; gene_name "TENM3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000133641.3" ; havana_transcript "OTTHUMT00000257786.2" ; hgnc_id "HGNC:28076" ; level 2 ; orig_coord_info "chr4,182144339,182144466,-" ; tag basic ; transcript_id "TENM3-AS1--TENM3^ENST00000315302.6" ; transcript_name "TENM3-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
TENM3-AS1--TENM3 HAVANA RNA 1784 4600 . + . FI_gene_label "TENM3-AS1^ENSG00000177822.8" ; ID "TENM3-AS1--TENM3^ENST00000315302.6" ; Parent "TENM3-AS1--TENM3^TENM3-AS1^ENSG00000177822.8" ; exon_id "ENSE00001234648.1" ; exon_number 1 ; gene_id "TENM3-AS1--TENM3^TENM3-AS1^ENSG00000177822.8" ; gene_name "TENM3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000133641.3" ; havana_transcript "OTTHUMT00000257786.2" ; hgnc_id "HGNC:28076" ; level 2 ; orig_coord_info "chr4,182144339,182144466,-" ; tag basic ; transcript_id "TENM3-AS1--TENM3^ENST00000315302.6" ; transcript_name "TENM3-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TPD52L2--AC005972.3 HAVANA gene 15145 16877 . + . FI_gene_label "AC005972.3^ENSG00000283538.3" ; ID "TPD52L2--AC005972.3^AC005972.3^ENSG00000283538.3" ; exon_id "ENSE00003837708.1" ; exon_number 1 ; gene_id "TPD52L2--AC005972.3^AC005972.3^ENSG00000283538.3" ; gene_name "AC005972.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179100.4" ; havana_transcript "OTTHUMT00000444764.1" ; level 2 ; orig_coord_info "chr17,62968500,62968549,-" ; tag basic ; transcript_id "TPD52L2--AC005972.3^ENST00000581596.1" ; transcript_name "AC005972.3-203" ; transcript_support_level 1 ; transcript_type lncRNA
TPD52L2--AC005972.3 HAVANA RNA 15145 16877 . + . FI_gene_label "AC005972.3^ENSG00000283538.3" ; ID "TPD52L2--AC005972.3^ENST00000581596.1" ; Parent "TPD52L2--AC005972.3^AC005972.3^ENSG00000283538.3" ; exon_id "ENSE00003837708.1" ; exon_number 1 ; gene_id "TPD52L2--AC005972.3^AC005972.3^ENSG00000283538.3" ; gene_name "AC005972.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179100.4" ; havana_transcript "OTTHUMT00000444764.1" ; level 2 ; orig_coord_info "chr17,62968500,62968549,-" ; tag basic ; transcript_id "TPD52L2--AC005972.3^ENST00000581596.1" ; transcript_name "AC005972.3-203" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
TPD52L2--PRELID3BP3 HAVANA gene 15145 15689 . + . FI_gene_label "PRELID3BP3^ENSG00000264907.1" ; ID "TPD52L2--PRELID3BP3^PRELID3BP3^ENSG00000264907.1" ; exon_id "ENSE00002705723.1" ; exon_number 1 ; gene_id "TPD52L2--PRELID3BP3^PRELID3BP3^ENSG00000264907.1" ; gene_name PRELID3BP3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000179194.1" ; havana_transcript "OTTHUMT00000445259.1" ; hgnc_id "HGNC:49065" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,62841101,62841645,+" ; tag pseudo_consens basic ; transcript_id "TPD52L2--PRELID3BP3^ENST00000584963.1" ; transcript_name "PRELID3BP3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TPD52L2--PRELID3BP3 HAVANA RNA 15145 15689 . + . FI_gene_label "PRELID3BP3^ENSG00000264907.1" ; ID "TPD52L2--PRELID3BP3^ENST00000584963.1" ; Parent "TPD52L2--PRELID3BP3^PRELID3BP3^ENSG00000264907.1" ; exon_id "ENSE00002705723.1" ; exon_number 1 ; gene_id "TPD52L2--PRELID3BP3^PRELID3BP3^ENSG00000264907.1" ; gene_name PRELID3BP3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000179194.1" ; havana_transcript "OTTHUMT00000445259.1" ; hgnc_id "HGNC:49065" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,62841101,62841645,+" ; tag pseudo_consens basic ; transcript_id "TPD52L2--PRELID3BP3^ENST00000584963.1" ; transcript_name "PRELID3BP3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TPTE--BAGE2 HAVANA gene 27330 39533 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "TPTE--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
TPTE--BAGE2 HAVANA RNA 27330 39533 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "TPTE--BAGE2^ENST00000470054.5" ; Parent "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "TPTE--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
TTC6--AL121790.1 HAVANA gene 55147 56884 . + . FI_gene_label "AL121790.1^ENSG00000258414.1" ; ID "TTC6--AL121790.1^AL121790.1^ENSG00000258414.1" ; exon_id "ENSE00002458641.1" ; exon_number 1 ; gene_id "TTC6--AL121790.1^AL121790.1^ENSG00000258414.1" ; gene_name "AL121790.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170995.2" ; havana_transcript "OTTHUMT00000411127.1" ; level 2 ; orig_coord_info "chr14,37564047,37564362,+" ; tag basic ; transcript_id "TTC6--AL121790.1^ENST00000554829.1" ; transcript_name "AL121790.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
TTC6--AL121790.1 HAVANA RNA 55147 56884 . + . FI_gene_label "AL121790.1^ENSG00000258414.1" ; ID "TTC6--AL121790.1^ENST00000554829.1" ; Parent "TTC6--AL121790.1^AL121790.1^ENSG00000258414.1" ; exon_id "ENSE00002458641.1" ; exon_number 1 ; gene_id "TTC6--AL121790.1^AL121790.1^ENSG00000258414.1" ; gene_name "AL121790.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170995.2" ; havana_transcript "OTTHUMT00000411127.1" ; level 2 ; orig_coord_info "chr14,37564047,37564362,+" ; tag basic ; transcript_id "TTC6--AL121790.1^ENST00000554829.1" ; transcript_name "AL121790.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
UNK--AC115085.1 ENSEMBL gene 22155 22240 . + . FI_gene_label "AC115085.1^ENSG00000252352.1" ; ID "UNK--AC115085.1^AC115085.1^ENSG00000252352.1" ; exon_id "ENSE00002088820.1" ; exon_number 1 ; gene_id "UNK--AC115085.1^AC115085.1^ENSG00000252352.1" ; gene_name "AC115085.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr17,69355133,69355218,-" ; tag basic ; transcript_id "UNK--AC115085.1^ENST00000516543.1" ; transcript_name "AC115085.1-201" ; transcript_support_level NA ; transcript_type snoRNA
UNK--AC115085.1 ENSEMBL RNA 22155 22240 . + . FI_gene_label "AC115085.1^ENSG00000252352.1" ; ID "UNK--AC115085.1^ENST00000516543.1" ; Parent "UNK--AC115085.1^AC115085.1^ENSG00000252352.1" ; exon_id "ENSE00002088820.1" ; exon_number 1 ; gene_id "UNK--AC115085.1^AC115085.1^ENSG00000252352.1" ; gene_name "AC115085.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr17,69355133,69355218,-" ; tag basic ; transcript_id "UNK--AC115085.1^ENST00000516543.1" ; transcript_name "AC115085.1-201" ; transcript_support_level NA ; transcript_type snoRNA
L1 and L2 created:
VAV3--AP4B1-AS1 HAVANA gene 45883 50752 . + . FI_gene_label "AP4B1-AS1^ENSG00000226167.1" ; ID "VAV3--AP4B1-AS1^AP4B1-AS1^ENSG00000226167.1" ; exon_id "ENSE00001744471.1" ; exon_number 1 ; gene_id "VAV3--AP4B1-AS1^AP4B1-AS1^ENSG00000226167.1" ; gene_name "AP4B1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011941.1" ; havana_transcript "OTTHUMT00000033027.1" ; hgnc_id "HGNC:44114" ; level 2 ; orig_coord_info "chr1,113856635,113856724,+" ; tag basic ; transcript_id "VAV3--AP4B1-AS1^ENST00000419536.1" ; transcript_name "AP4B1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
VAV3--AP4B1-AS1 HAVANA RNA 45883 50752 . + . FI_gene_label "AP4B1-AS1^ENSG00000226167.1" ; ID "VAV3--AP4B1-AS1^ENST00000419536.1" ; Parent "VAV3--AP4B1-AS1^AP4B1-AS1^ENSG00000226167.1" ; exon_id "ENSE00001744471.1" ; exon_number 1 ; gene_id "VAV3--AP4B1-AS1^AP4B1-AS1^ENSG00000226167.1" ; gene_name "AP4B1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011941.1" ; havana_transcript "OTTHUMT00000033027.1" ; hgnc_id "HGNC:44114" ; level 2 ; orig_coord_info "chr1,113856635,113856724,+" ; tag basic ; transcript_id "VAV3--AP4B1-AS1^ENST00000419536.1" ; transcript_name "AP4B1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
VTCN1--KRT18P24 HAVANA gene 14028 15183 . + . FI_gene_label "KRT18P24^ENSG00000226234.2" ; ID "VTCN1--KRT18P24^KRT18P24^ENSG00000226234.2" ; exon_id "ENSE00001663969.1" ; exon_number 1 ; gene_id "VTCN1--KRT18P24^KRT18P24^ENSG00000226234.2" ; gene_name KRT18P24 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020068.1" ; havana_transcript "OTTHUMT00000052780.1" ; hgnc_id "HGNC:33393" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,79036413,79037568,-" ; tag pseudo_consens basic ; transcript_id "VTCN1--KRT18P24^ENST00000344739.5" ; transcript_name "KRT18P24-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
VTCN1--KRT18P24 HAVANA RNA 14028 15183 . + . FI_gene_label "KRT18P24^ENSG00000226234.2" ; ID "VTCN1--KRT18P24^ENST00000344739.5" ; Parent "VTCN1--KRT18P24^KRT18P24^ENSG00000226234.2" ; exon_id "ENSE00001663969.1" ; exon_number 1 ; gene_id "VTCN1--KRT18P24^KRT18P24^ENSG00000226234.2" ; gene_name KRT18P24 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020068.1" ; havana_transcript "OTTHUMT00000052780.1" ; hgnc_id "HGNC:33393" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,79036413,79037568,-" ; tag pseudo_consens basic ; transcript_id "VTCN1--KRT18P24^ENST00000344739.5" ; transcript_name "KRT18P24-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
VTCN1--MTND2P8 HAVANA gene 14028 15052 . + . FI_gene_label "MTND2P8^ENSG00000237257.1" ; ID "VTCN1--MTND2P8^MTND2P8^ENSG00000237257.1" ; exon_id "ENSE00001746548.1" ; exon_number 1 ; gene_id "VTCN1--MTND2P8^MTND2P8^ENSG00000237257.1" ; gene_name MTND2P8 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000020067.1" ; havana_transcript "OTTHUMT00000052779.1" ; hgnc_id "HGNC:42109" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr9,78741720,78742744,-" ; tag basic ; transcript_id "VTCN1--MTND2P8^ENST00000450555.1" ; transcript_name "MTND2P8-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
VTCN1--MTND2P8 HAVANA RNA 14028 15052 . + . FI_gene_label "MTND2P8^ENSG00000237257.1" ; ID "VTCN1--MTND2P8^ENST00000450555.1" ; Parent "VTCN1--MTND2P8^MTND2P8^ENSG00000237257.1" ; exon_id "ENSE00001746548.1" ; exon_number 1 ; gene_id "VTCN1--MTND2P8^MTND2P8^ENSG00000237257.1" ; gene_name MTND2P8 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000020067.1" ; havana_transcript "OTTHUMT00000052779.1" ; hgnc_id "HGNC:42109" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr9,78741720,78742744,-" ; tag basic ; transcript_id "VTCN1--MTND2P8^ENST00000450555.1" ; transcript_name "MTND2P8-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
2743 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 1 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 1 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
5196 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 216 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 3 second) ------
GFF3 file parsed