.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (BT-20_FFPE_RNA_0001_B23LG7FLT4_3)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/6d6352820b91c04403ad69277e53f4/.command.sh
Size: 757 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (BT-20_FFPE_RNA_0001_B23LG7FLT4_3)
Attempt

Content

#!/bin/bash -euo pipefail
cat BT-20_FFPE_RNA_0001_B23LG7FLT4_3_S23_L001_R1_001.fastq.gz BT-20_FFPE_RNA_0001_B23LG7FLT4_3_S23_L002_R1_001.fastq.gz BT-20_FFPE_RNA_0001_B23LG7FLT4_3_S23_L003_R1_001.fastq.gz BT-20_FFPE_RNA_0001_B23LG7FLT4_3_S23_L004_R1_001.fastq.gz > BT-20_FFPE_RNA_0001_B23LG7FLT4_3_R1.fastq.gz
cat BT-20_FFPE_RNA_0001_B23LG7FLT4_3_S23_L001_R2_001.fastq.gz BT-20_FFPE_RNA_0001_B23LG7FLT4_3_S23_L002_R2_001.fastq.gz BT-20_FFPE_RNA_0001_B23LG7FLT4_3_S23_L003_R2_001.fastq.gz BT-20_FFPE_RNA_0001_B23LG7FLT4_3_S23_L004_R2_001.fastq.gz > BT-20_FFPE_RNA_0001_B23LG7FLT4_3_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS