Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/828dd37c3b8136ad1b4bcfbc043b43/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/05e9e37ee3344725e12eb87bcbdf74/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/828dd37c3b8136ad1b4bcfbc043b43/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
paired = 9156681
unpaired = 278654
MERGED PAIRED END READS = 9156681
MATES PROCESSED = 18592016
TOTAL READS = 9435335
DISTINCT READS = 2.38199e+06
DISTINCT COUNTS = 328
MAX COUNT = 38580
COUNTS OF 1 = 1.0481e+06
MAX TERMS = 100
OBSERVED COUNTS (38581)
1 1048100
2 349211
3 195652
4 145374
5 118658
6 97010
7 79366
8 64364
9 51958
10 41585
11 33320
12 27062
13 21962
14 17298
15 14171
16 11543
17 9317
18 7903
19 6336
20 5284
21 4498
22 3877
23 3218
24 2789
25 2427
26 2056
27 1796
28 1607
29 1370
30 1200
31 1040
32 934
33 868
34 769
35 687
36 575
37 588
38 526
39 446
40 415
41 352
42 307
43 321
44 265
45 234
46 197
47 216
48 198
49 160
50 144
51 153
52 141
53 124
54 96
55 83
56 90
57 73
58 78
59 73
60 56
61 52
62 50
63 55
64 43
65 45
66 48
67 34
68 25
69 27
70 38
71 37
72 28
73 36
74 30
75 31
76 37
77 16
78 24
79 20
80 15
81 17
82 27
83 16
84 14
85 16
86 12
87 17
88 14
89 10
90 18
91 12
92 18
93 9
94 14
95 9
96 9
97 16
98 16
99 4
100 10
101 10
102 9
103 10
104 11
105 6
106 7
107 6
108 5
109 6
110 6
111 7
112 6
113 6
114 2
115 5
116 9
117 7
118 7
119 6
120 4
121 10
122 12
123 2
124 2
125 3
126 5
127 5
128 3
129 4
130 2
131 4
132 7
133 3
134 6
135 5
136 4
137 1
138 7
139 1
140 4
141 6
142 1
143 3
144 3
145 3
146 4
147 5
148 2
149 3
150 1
151 1
152 1
153 2
154 3
155 2
156 2
157 4
158 1
160 2
161 3
162 3
163 2
164 4
165 2
166 1
167 3
168 1
169 2
170 3
171 1
172 1
173 3
174 3
175 1
177 3
178 2
179 1
182 6
183 1
184 1
185 1
186 2
187 2
189 3
190 2
191 1
195 1
196 1
198 1
199 2
200 1
201 1
203 2
204 1
205 4
208 1
209 4
211 2
213 1
215 4
216 2
217 1
218 1
220 1
221 1
224 2
228 1
229 1
232 2
233 1
234 1
237 2
238 1
239 1
240 1
242 2
244 2
245 2
247 1
248 1
249 2
254 1
256 1
258 1
259 1
263 1
265 1
267 2
271 1
272 1
275 1
277 1
278 2
279 1
283 1
287 1
288 1
289 1
294 1
295 1
300 1
302 1
303 2
309 1
312 1
321 1
322 1
325 2
326 1
327 2
328 1
337 1
343 1
346 1
349 1
351 1
358 1
367 1
368 1
370 1
385 1
387 1
395 1
397 1
405 1
406 1
408 1
410 1
411 2
416 1
423 1
424 2
425 1
428 1
430 1
432 1
442 1
448 1
453 1
457 1
465 1
467 1
468 1
474 1
475 1
489 1
503 1
511 1
516 1
532 2
538 1
551 1
556 1
564 1
581 1
587 1
605 1
614 1
651 1
652 1
695 1
737 1
774 1
807 1
846 1
883 1
907 1
966 1
972 1
1046 1
1055 1
1070 1
1088 1
1123 1
1218 1
1422 1
1489 1
1536 1
1665 1
1820 1
1843 1
1979 1
2128 1
2637 1
4100 1
5359 1
5698 1
38580 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.............................._...................._....................
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[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]