#!/bin/bash -euo pipefail
cat SW780_FFPE_RNA_0001_B23LG7FLT4_3_S44_L001_R1_001.fastq.gz SW780_FFPE_RNA_0001_B23LG7FLT4_3_S44_L002_R1_001.fastq.gz SW780_FFPE_RNA_0001_B23LG7FLT4_3_S44_L003_R1_001.fastq.gz SW780_FFPE_RNA_0001_B23LG7FLT4_3_S44_L004_R1_001.fastq.gz > SW780_FFPE_RNA_0001_B23LG7FLT4_3_R1.fastq.gz
cat SW780_FFPE_RNA_0001_B23LG7FLT4_3_S44_L001_R2_001.fastq.gz SW780_FFPE_RNA_0001_B23LG7FLT4_3_S44_L002_R2_001.fastq.gz SW780_FFPE_RNA_0001_B23LG7FLT4_3_S44_L003_R2_001.fastq.gz SW780_FFPE_RNA_0001_B23LG7FLT4_3_S44_L004_R2_001.fastq.gz > SW780_FFPE_RNA_0001_B23LG7FLT4_3_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS