Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/ac8b1eaf7821ffd60f3b23b69cdca6/A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/3e44e9db850207ea796baf8f98b1ee/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/3e44e9db850207ea796baf8f98b1ee/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT A673_FFPE_RNA_0001_B23LG7FLT4_3.md.bam --METRICS_FILE A673_FFPE_RNA_0001_B23LG7FLT4_3.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:46:06.788 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:46:06 GMT 2026] MarkDuplicates --INPUT A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT A673_FFPE_RNA_0001_B23LG7FLT4_3.md.bam --METRICS_FILE A673_FFPE_RNA_0001_B23LG7FLT4_3.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:46:06 GMT 2026] Executing as ?@nf-523e44e9db850207ea796baf8f98b1ee-29c1d-zbgjh on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:46:06 MarkDuplicates Start of doWork freeMemory: 105829008; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:46:06 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:46:06 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,280,634
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 2378 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,790,429
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 5605 as yet unmatched pairs. 842 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,386,133
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 7480 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,863,915
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 10854 as yet unmatched pairs. 1104 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:11,020,526
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 13426 as yet unmatched pairs. 1405 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:12,276,098
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 14543 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:16,133,598
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 17412 as yet unmatched pairs. 947 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,088,807
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 19251 as yet unmatched pairs. 668 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:20,655,719
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 21397 as yet unmatched pairs. 522 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:23,068,614
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 24148 as yet unmatched pairs. 1086 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:24,661,324
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 25464 as yet unmatched pairs. 255 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:26,729,735
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 27989 as yet unmatched pairs. 693 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:27,892,097
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 29901 as yet unmatched pairs. 470 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:29,109,404
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 33917 as yet unmatched pairs. 2447 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:32,228,597
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 34749 as yet unmatched pairs. 865 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:34,032,658
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 36352 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:35,737,020
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 38922 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:37,701,777
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 41018 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:39,479,835
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 44333 as yet unmatched pairs. 1107 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:42,683,430
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 47881 as yet unmatched pairs. 2301 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:43,976,793
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 48597 as yet unmatched pairs. 708 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:45,607,496
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 50947 as yet unmatched pairs. 807 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:51,361,219
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 52937 as yet unmatched pairs. 420 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:51,827,858
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 59028 as yet unmatched pairs. 4354 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:54,757,516
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 56909 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:61,383,285
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 59242 as yet unmatched pairs. 337 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:66,368,918
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 61279 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:77,711,746
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 64064 as yet unmatched pairs. 850 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:90,712,593
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 66211 as yet unmatched pairs. 833 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:97,740,435
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 67420 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:109,267,920
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 69739 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:110,342,139
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 72228 as yet unmatched pairs. 467 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:113,980,382
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 74959 as yet unmatched pairs. 1044 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:116,387,287
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 77242 as yet unmatched pairs. 1070 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:119,721,264
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 79357 as yet unmatched pairs. 1163 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:121,365,302
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 80443 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:146,158,776
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 82118 as yet unmatched pairs. 642 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,545
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 82696 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,892
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 84276 as yet unmatched pairs. 297 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:150,496,819
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 86049 as yet unmatched pairs. 238 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:151,399,687
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 88531 as yet unmatched pairs. 570 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:153,636,606
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 90148 as yet unmatched pairs. 511 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 3s. Last read position: chr1:154,170,408
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 108327 as yet unmatched pairs. 16503 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 4s. Last read position: chr1:154,588,234
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 94493 as yet unmatched pairs. 613 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:155,261,691
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 96391 as yet unmatched pairs. 324 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:155,952,214
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 98466 as yet unmatched pairs. 427 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:156,548,476
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 100631 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:160,213,243
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 102796 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:162,662,754
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 105600 as yet unmatched pairs. 637 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:171,522,177
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 107515 as yet unmatched pairs. 347 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:177,501,901
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 109151 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:183,103,441
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 111454 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:185,963,881
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 114295 as yet unmatched pairs. 880 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:186,189,683
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 117581 as yet unmatched pairs. 2010 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:186,373,377
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 118712 as yet unmatched pairs. 1280 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:201,293,999
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 121981 as yet unmatched pairs. 2406 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:201,969,502
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 122311 as yet unmatched pairs. 400 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 3s. Last read position: chr1:205,241,844
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 124071 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr1:212,858,647
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 126428 as yet unmatched pairs. 449 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:220,157,278
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 128215 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:225,650,117
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 130320 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:228,277,217
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 132540 as yet unmatched pairs. 176 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:234,394,144
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 135149 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:244,854,978
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 139711 as yet unmatched pairs. 2580 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 3s. Last read position: chr2:272,037
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 140052 as yet unmatched pairs. 138553 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:8,747,988
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 142126 as yet unmatched pairs. 140606 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:11,192,509
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 144315 as yet unmatched pairs. 142762 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:23,642,720
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 146329 as yet unmatched pairs. 144750 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:26,238,952
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 148959 as yet unmatched pairs. 147339 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:27,226,227
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 151377 as yet unmatched pairs. 149732 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:28,752,110
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 155786 as yet unmatched pairs. 154121 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:32,599,739
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 155514 as yet unmatched pairs. 153812 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 360580 as yet unmatched pairs. 140420 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 1007166 as yet unmatched pairs. 98510 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 1156270 as yet unmatched pairs. 89196 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,442
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 1214919 as yet unmatched pairs. 85587 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:39,326,183
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 1218466 as yet unmatched pairs. 83410 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:43,901,460
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 1216506 as yet unmatched pairs. 81439 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:48,346,374
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 1214334 as yet unmatched pairs. 79244 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:55,315,981
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 1212462 as yet unmatched pairs. 77349 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:61,872,087
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 1210288 as yet unmatched pairs. 75156 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:68,317,108
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 1207990 as yet unmatched pairs. 72819 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:71,423,271
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 1205980 as yet unmatched pairs. 70778 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:74,198,646
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 1204488 as yet unmatched pairs. 69259 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:85,049,578
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 1201451 as yet unmatched pairs. 66202 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:86,951,339
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 1199224 as yet unmatched pairs. 63947 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:96,303,313
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 1198079 as yet unmatched pairs. 62785 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:101,005,972
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 1199283 as yet unmatched pairs. 63964 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:108,749,113
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 1195663 as yet unmatched pairs. 60324 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:109,585,729
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 1193712 as yet unmatched pairs. 58368 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:110,669,508
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 1191702 as yet unmatched pairs. 56351 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:113,217,981
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 1189803 as yet unmatched pairs. 54433 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:127,496,110
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 1188003 as yet unmatched pairs. 52598 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:132,781,155
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 1185797 as yet unmatched pairs. 50361 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:144,517,306
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 1184872 as yet unmatched pairs. 49383 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:158,680,443
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 1182114 as yet unmatched pairs. 46587 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:169,925,714
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 1180077 as yet unmatched pairs. 44515 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:176,107,359
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 1178576 as yet unmatched pairs. 42994 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:181,062,790
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 1175829 as yet unmatched pairs. 40225 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:190,927,195
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 1173667 as yet unmatched pairs. 38038 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:199,925,766
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 1171594 as yet unmatched pairs. 35938 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:203,439,971
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 1169735 as yet unmatched pairs. 34052 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:211,901,759
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 1167833 as yet unmatched pairs. 32138 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:215,371,888
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 1170812 as yet unmatched pairs. 35075 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,522
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 1170747 as yet unmatched pairs. 34998 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,875
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 1166135 as yet unmatched pairs. 30384 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr2:215,399,302
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 1164255 as yet unmatched pairs. 28492 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:215,410,099
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 1161763 as yet unmatched pairs. 25991 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,356
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 1160914 as yet unmatched pairs. 25123 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:217,804,585
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 1153666 as yet unmatched pairs. 17855 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr2:218,981,967
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 1151059 as yet unmatched pairs. 15228 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:222,927,178
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 1148635 as yet unmatched pairs. 12761 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:229,879,996
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 1147028 as yet unmatched pairs. 11130 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:231,708,643
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 1145457 as yet unmatched pairs. 9535 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr2:238,061,079
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 1142085 as yet unmatched pairs. 6129 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:240,750,493
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 1140304 as yet unmatched pairs. 4321 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:241,488,186
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 1137264 as yet unmatched pairs. 1252 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr3:9,757,107
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 1134940 as yet unmatched pairs. 50514 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:12,606,249
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 1134871 as yet unmatched pairs. 50410 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:16,269,266
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 1131043 as yet unmatched pairs. 46573 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:32,727,848
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 1128989 as yet unmatched pairs. 44484 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:40,462,087
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 1127464 as yet unmatched pairs. 42931 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:47,435,105
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 1124697 as yet unmatched pairs. 40134 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:49,012,531
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 1122653 as yet unmatched pairs. 38060 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:50,320,252
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 1120110 as yet unmatched pairs. 35494 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:53,233,169
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 1117750 as yet unmatched pairs. 33110 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:72,996,971
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 1115647 as yet unmatched pairs. 30978 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:100,728,828
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 1117677 as yet unmatched pairs. 32968 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:113,660,424
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 1111769 as yet unmatched pairs. 27044 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:123,209,317
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 1109617 as yet unmatched pairs. 24860 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:127,617,027
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 1107768 as yet unmatched pairs. 22978 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:129,437,042
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 1105009 as yet unmatched pairs. 20212 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:136,326,851
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 1103342 as yet unmatched pairs. 18522 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:146,071,121
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 1100851 as yet unmatched pairs. 16000 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:155,893,610
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 1098971 as yet unmatched pairs. 14083 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:170,084,545
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 1096577 as yet unmatched pairs. 11673 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:180,986,986
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 1095398 as yet unmatched pairs. 10474 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:184,315,769
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 1093460 as yet unmatched pairs. 8516 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr3:186,080,035
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 1090799 as yet unmatched pairs. 5824 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:194,137,801
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 1088394 as yet unmatched pairs. 3390 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:197,243,575
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 1085839 as yet unmatched pairs. 805 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:1,323,163
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 1083411 as yet unmatched pairs. 37392 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:1,744,787
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 1081973 as yet unmatched pairs. 35935 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:2,931,839
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 1078430 as yet unmatched pairs. 32360 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:7,001,238
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 1075997 as yet unmatched pairs. 29906 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:15,644,703
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 1073577 as yet unmatched pairs. 27468 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:30,721,565
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 1072587 as yet unmatched pairs. 26439 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:39,917,094
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 1070130 as yet unmatched pairs. 23949 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:55,878,007
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 1067193 as yet unmatched pairs. 20989 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:76,996,452
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 1066624 as yet unmatched pairs. 20394 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:86,762,856
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 1063560 as yet unmatched pairs. 17307 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:99,949,674
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 1061842 as yet unmatched pairs. 15571 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:107,644,854
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 1059241 as yet unmatched pairs. 12939 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr4:120,065,783
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 1057876 as yet unmatched pairs. 11545 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:125,491,254
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 1054986 as yet unmatched pairs. 8638 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:143,337,148
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 1052844 as yet unmatched pairs. 6486 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:152,872,453
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 1050955 as yet unmatched pairs. 4566 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:169,750,586
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 1048896 as yet unmatched pairs. 2461 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr4:186,708,893
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 1046824 as yet unmatched pairs. 366 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr5:6,604,671
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 1044387 as yet unmatched pairs. 59481 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr5:14,461,187
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 1042100 as yet unmatched pairs. 57174 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:17,275,281
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 1041161 as yet unmatched pairs. 56198 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:34,925,354
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 1037908 as yet unmatched pairs. 52918 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:37,324,100
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 1036449 as yet unmatched pairs. 51440 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:54,053,449
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 1033904 as yet unmatched pairs. 48860 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:62,398,707
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 1031829 as yet unmatched pairs. 46759 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:69,916,101
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 1029787 as yet unmatched pairs. 44694 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:71,539,596
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 1029167 as yet unmatched pairs. 44064 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:75,350,039
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 1027565 as yet unmatched pairs. 42441 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:81,665,302
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 1024885 as yet unmatched pairs. 39746 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:98,872,092
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 1023076 as yet unmatched pairs. 37914 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:116,486,773
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 1020945 as yet unmatched pairs. 35747 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr5:132,598,077
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 1018776 as yet unmatched pairs. 33549 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:134,854,931
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 1017069 as yet unmatched pairs. 31820 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:138,556,572
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 1015026 as yet unmatched pairs. 29763 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:140,528,971
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 1012777 as yet unmatched pairs. 27453 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:140,927,391
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 1010258 as yet unmatched pairs. 24919 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:141,319,147
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 1008476 as yet unmatched pairs. 23126 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:141,534,357
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 1006306 as yet unmatched pairs. 20938 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:147,583,848
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 1003865 as yet unmatched pairs. 18476 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:150,535,781
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 1001815 as yet unmatched pairs. 16406 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:154,891,691
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 999605 as yet unmatched pairs. 14178 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr5:168,262,639
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 997503 as yet unmatched pairs. 12046 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,712
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 1012859 as yet unmatched pairs. 27388 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr5:172,959,938
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 993984 as yet unmatched pairs. 8502 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:177,332,072
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 992565 as yet unmatched pairs. 7069 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:178,210,144
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 990099 as yet unmatched pairs. 4594 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:179,863,586
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 987251 as yet unmatched pairs. 1719 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr6:3,154,288
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 986515 as yet unmatched pairs. 67669 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:7,230,982
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 983889 as yet unmatched pairs. 65023 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:15,627,440
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 981197 as yet unmatched pairs. 62314 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:26,020,502
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 980764 as yet unmatched pairs. 61855 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr6:26,158,430
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 978442 as yet unmatched pairs. 59518 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:26,251,966
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 974177 as yet unmatched pairs. 55229 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:27,810,137
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 973318 as yet unmatched pairs. 54348 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:27,872,184
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 970252 as yet unmatched pairs. 51262 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:30,601,943
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 968513 as yet unmatched pairs. 49514 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:31,532,818
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 965619 as yet unmatched pairs. 46604 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:31,651,665
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 963770 as yet unmatched pairs. 44742 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:31,880,147
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 961608 as yet unmatched pairs. 42572 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:33,204,946
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 959050 as yet unmatched pairs. 40006 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:33,451,865
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 956720 as yet unmatched pairs. 37665 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:36,213,952
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 954572 as yet unmatched pairs. 35493 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr6:41,646,220
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 953260 as yet unmatched pairs. 34154 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:43,076,498
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 949520 as yet unmatched pairs. 30397 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:44,232,880
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 947391 as yet unmatched pairs. 28259 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:52,995,704
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 954922 as yet unmatched pairs. 35761 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:68,780,997
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 942983 as yet unmatched pairs. 23793 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:81,752,135
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 941189 as yet unmatched pairs. 21957 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr6:87,701,809
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 939030 as yet unmatched pairs. 19772 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:99,401,609
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 937013 as yet unmatched pairs. 17727 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:110,102,010
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 935444 as yet unmatched pairs. 16138 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:117,998,954
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 932564 as yet unmatched pairs. 13241 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:130,956,310
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 930943 as yet unmatched pairs. 11589 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:139,373,688
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 929158 as yet unmatched pairs. 9777 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:150,949,057
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 926527 as yet unmatched pairs. 7133 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:158,502,912
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 924284 as yet unmatched pairs. 4865 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:160,084,104
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 922067 as yet unmatched pairs. 2639 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:170,549,008
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 922058 as yet unmatched pairs. 2594 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr7:2,360,784
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 918014 as yet unmatched pairs. 60196 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:5,313,352
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 914713 as yet unmatched pairs. 56875 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,161
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 914627 as yet unmatched pairs. 56774 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:6,474,232
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 910160 as yet unmatched pairs. 52293 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:22,813,037
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 907852 as yet unmatched pairs. 49964 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:29,194,924
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 905688 as yet unmatched pairs. 47765 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:39,690,523
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 903675 as yet unmatched pairs. 45735 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:44,490,465
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 901294 as yet unmatched pairs. 43343 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:56,059,558
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 899657 as yet unmatched pairs. 41694 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,594
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 897162 as yet unmatched pairs. 39168 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:74,115,838
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 895604 as yet unmatched pairs. 37602 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:75,417,834
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 893782 as yet unmatched pairs. 35761 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:76,540,179
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 891728 as yet unmatched pairs. 33693 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:91,265,300
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 890509 as yet unmatched pairs. 32448 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:94,421,928
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 888134 as yet unmatched pairs. 30056 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:98,386,019
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 886451 as yet unmatched pairs. 28365 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:100,095,834
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 883926 as yet unmatched pairs. 25822 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,707,105
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 881280 as yet unmatched pairs. 23167 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:102,555,883
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 878776 as yet unmatched pairs. 20640 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:107,748,914
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 877088 as yet unmatched pairs. 18932 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:119,691,839
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 874809 as yet unmatched pairs. 16623 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr7:127,844,383
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 875709 as yet unmatched pairs. 17509 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr7:129,422,901
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 870753 as yet unmatched pairs. 12548 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:135,929,841
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 868825 as yet unmatched pairs. 10585 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:140,834,665
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 867359 as yet unmatched pairs. 9109 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:148,814,127
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 865048 as yet unmatched pairs. 6777 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr7:151,070,849
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 862300 as yet unmatched pairs. 4016 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:155,308,248
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 859876 as yet unmatched pairs. 1580 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 64s. Last read position: chr8:9,003,073
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 857583 as yet unmatched pairs. 49354 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:13,021,320
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 857409 as yet unmatched pairs. 49159 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:22,098,294
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 853037 as yet unmatched pairs. 44768 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:23,022,700
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 850919 as yet unmatched pairs. 42636 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:26,634,891
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 849384 as yet unmatched pairs. 41091 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:31,064,994
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 846280 as yet unmatched pairs. 37974 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:37,845,636
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 843637 as yet unmatched pairs. 35304 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:38,413,629
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 843324 as yet unmatched pairs. 34975 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr8:42,048,864
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 839427 as yet unmatched pairs. 31067 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr8:47,902,637
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 838336 as yet unmatched pairs. 29965 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:56,166,294
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 835409 as yet unmatched pairs. 27027 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:69,672,773
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 833965 as yet unmatched pairs. 25563 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:76,704,721
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 830826 as yet unmatched pairs. 22398 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:99,702,560
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 828691 as yet unmatched pairs. 20242 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:119,862,787
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 826579 as yet unmatched pairs. 18106 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,449
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 827045 as yet unmatched pairs. 18560 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:140,559,507
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 822533 as yet unmatched pairs. 14019 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,589,421
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 820295 as yet unmatched pairs. 11762 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,287
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 817195 as yet unmatched pairs. 8648 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:144,099,583
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 814809 as yet unmatched pairs. 6240 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:144,424,707
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 812551 as yet unmatched pairs. 3960 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:144,841,626
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 809404 as yet unmatched pairs. 784 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr9:9,442,138
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 806933 as yet unmatched pairs. 49749 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:20,923,723
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 805262 as yet unmatched pairs. 48061 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:34,255,986
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 803078 as yet unmatched pairs. 45843 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr9:35,607,946
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 800562 as yet unmatched pairs. 43316 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:37,522,963
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 798201 as yet unmatched pairs. 40923 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:78,266,540
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 797315 as yet unmatched pairs. 40015 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:87,640,355
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 796093 as yet unmatched pairs. 38764 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:92,240,861
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 792724 as yet unmatched pairs. 35371 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:95,892,944
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 789769 as yet unmatched pairs. 32393 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:106,926,323
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 787806 as yet unmatched pairs. 30412 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:113,203,013
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 785593 as yet unmatched pairs. 28186 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:120,402,908
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 783630 as yet unmatched pairs. 26208 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:123,117,551
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 781050 as yet unmatched pairs. 23622 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:127,788,273
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 779111 as yet unmatched pairs. 21670 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:128,584,481
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 776616 as yet unmatched pairs. 19169 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr9:129,008,691
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 774620 as yet unmatched pairs. 17160 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:130,874,884
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 772602 as yet unmatched pairs. 15096 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:131,604,975
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 769925 as yet unmatched pairs. 12409 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:133,449,907
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 767812 as yet unmatched pairs. 10279 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:135,882,939
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 765843 as yet unmatched pairs. 8292 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr9:136,517,360
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 763161 as yet unmatched pairs. 5591 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:137,088,938
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 760216 as yet unmatched pairs. 2630 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr9:138,239,424
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 757595 as yet unmatched pairs. 1 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 2s. Last read position: chr10:5,765,328
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 755544 as yet unmatched pairs. 44380 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:13,171,235
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 753499 as yet unmatched pairs. 42317 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:20,147,882
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 751655 as yet unmatched pairs. 40456 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr10:27,120,513
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 749744 as yet unmatched pairs. 38518 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:32,022,152
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 751094 as yet unmatched pairs. 39858 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:34,382,583
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 745193 as yet unmatched pairs. 33944 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr10:45,719,325
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 742794 as yet unmatched pairs. 31529 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:58,287,594
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 741368 as yet unmatched pairs. 30093 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:68,651,900
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 739161 as yet unmatched pairs. 27873 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr10:70,404,414
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 737399 as yet unmatched pairs. 26102 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:73,783,071
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 734921 as yet unmatched pairs. 23609 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:79,844,432
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 732562 as yet unmatched pairs. 21237 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:89,010,591
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 731141 as yet unmatched pairs. 19806 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:95,633,518
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 728866 as yet unmatched pairs. 17520 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:99,420,623
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 726770 as yet unmatched pairs. 15413 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:102,067,033
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 724306 as yet unmatched pairs. 12931 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:103,154,710
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 722109 as yet unmatched pairs. 10724 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:113,158,026
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 720000 as yet unmatched pairs. 8590 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:119,065,465
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 718576 as yet unmatched pairs. 7150 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr10:125,016,100
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 715580 as yet unmatched pairs. 4143 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:128,112,384
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 714382 as yet unmatched pairs. 2932 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr11:244,699
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 711787 as yet unmatched pairs. 84971 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 2s. Last read position: chr11:2,403,320
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 708828 as yet unmatched pairs. 81997 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr11:6,632,399
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 706324 as yet unmatched pairs. 79483 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr11:11,940,517
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 704362 as yet unmatched pairs. 77508 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:28,036,350
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 702682 as yet unmatched pairs. 75818 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:33,141,950
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 700375 as yet unmatched pairs. 73495 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:34,096,515
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 700485 as yet unmatched pairs. 73589 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:43,312,177
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 697408 as yet unmatched pairs. 70498 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:45,903,041
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 693853 as yet unmatched pairs. 66931 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:46,744,067
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 691979 as yet unmatched pairs. 65040 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:47,240,061
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 689537 as yet unmatched pairs. 62580 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:47,631,058
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 688084 as yet unmatched pairs. 61119 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr11:57,646,405
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 684818 as yet unmatched pairs. 57840 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:60,933,699
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 683023 as yet unmatched pairs. 56039 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:61,813,261
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 683415 as yet unmatched pairs. 56416 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,571
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 678077 as yet unmatched pairs. 51066 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:62,721,849
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 676035 as yet unmatched pairs. 49015 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:63,908,883
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 673285 as yet unmatched pairs. 46255 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:64,765,855
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 671046 as yet unmatched pairs. 44002 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:65,128,373
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 668418 as yet unmatched pairs. 41366 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,315
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 666099 as yet unmatched pairs. 39017 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:66,153,909
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 663505 as yet unmatched pairs. 36413 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:66,639,954
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 661488 as yet unmatched pairs. 34390 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:67,507,413
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 658154 as yet unmatched pairs. 31053 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr11:69,295,694
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 656589 as yet unmatched pairs. 29475 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:69,643,952
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 659726 as yet unmatched pairs. 32605 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:71,444,863
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 651443 as yet unmatched pairs. 24314 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:73,966,154
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 648690 as yet unmatched pairs. 21547 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:77,667,051
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 646840 as yet unmatched pairs. 19691 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:85,664,773
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 645094 as yet unmatched pairs. 17923 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:95,817,814
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 642629 as yet unmatched pairs. 15439 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:106,009,991
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 640462 as yet unmatched pairs. 13261 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:112,085,362
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 639427 as yet unmatched pairs. 12218 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:118,472,616
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 636967 as yet unmatched pairs. 9744 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:119,049,555
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 634458 as yet unmatched pairs. 7229 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr11:123,058,810
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 632922 as yet unmatched pairs. 5687 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:126,277,592
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 629637 as yet unmatched pairs. 2393 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr12:15,105
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 627330 as yet unmatched pairs. 78129 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:2,866,423
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 625858 as yet unmatched pairs. 76646 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:6,582,205
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 623413 as yet unmatched pairs. 74188 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:6,919,759
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 621222 as yet unmatched pairs. 71992 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:9,312,277
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 618704 as yet unmatched pairs. 69468 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:14,438,128
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 616908 as yet unmatched pairs. 67646 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:24,894,426
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 615396 as yet unmatched pairs. 66126 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:42,313,101
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 612659 as yet unmatched pairs. 63383 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr12:44,817,186
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 616775 as yet unmatched pairs. 67492 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:47,965,978
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 608670 as yet unmatched pairs. 59378 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:49,050,041
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 607004 as yet unmatched pairs. 57697 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,470
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 605024 as yet unmatched pairs. 55713 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:49,992,284
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 603007 as yet unmatched pairs. 53688 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:53,038,375
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 600553 as yet unmatched pairs. 51222 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr12:53,467,226
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 601207 as yet unmatched pairs. 51868 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr12:54,283,929
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 597274 as yet unmatched pairs. 47913 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:55,748,812
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 594590 as yet unmatched pairs. 45224 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:56,252,811
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 592698 as yet unmatched pairs. 43321 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:56,663,574
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 590048 as yet unmatched pairs. 40668 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,724
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 589479 as yet unmatched pairs. 40098 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,471,201
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 585733 as yet unmatched pairs. 36350 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:57,768,931
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 583347 as yet unmatched pairs. 33960 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:67,657,182
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 581340 as yet unmatched pairs. 31946 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:71,785,563
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 579495 as yet unmatched pairs. 30082 records in RAM.
INFO 2026-06-08 08:58:38 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:88,096,898
INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 577291 as yet unmatched pairs. 27870 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:96,247,036
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 575845 as yet unmatched pairs. 26414 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:103,932,279
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 573933 as yet unmatched pairs. 24484 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:108,678,324
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 573261 as yet unmatched pairs. 23804 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:110,730,683
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 570562 as yet unmatched pairs. 21094 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:112,406,756
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 567170 as yet unmatched pairs. 17693 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:118,020,916
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 564388 as yet unmatched pairs. 14894 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:120,462,029
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 563133 as yet unmatched pairs. 13634 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:122,127,912
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 559536 as yet unmatched pairs. 10023 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 2s. Last read position: chr12:123,533,249
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 557322 as yet unmatched pairs. 7795 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr12:124,912,279
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 555232 as yet unmatched pairs. 5690 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:132,062,688
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 552964 as yet unmatched pairs. 3415 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:132,754,898
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 550466 as yet unmatched pairs. 907 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr13:20,842,928
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 548622 as yet unmatched pairs. 26197 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr13:25,171,069
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 546659 as yet unmatched pairs. 24222 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr13:30,657,631
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 544052 as yet unmatched pairs. 21598 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr13:36,879,610
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 542318 as yet unmatched pairs. 19841 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr13:45,151,795
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 540431 as yet unmatched pairs. 17927 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr13:46,359,594
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 539234 as yet unmatched pairs. 16723 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr13:52,455,555
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 536752 as yet unmatched pairs. 14231 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr13:77,046,933
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 534162 as yet unmatched pairs. 11627 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr13:97,990,134
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 533864 as yet unmatched pairs. 11316 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr13:99,982,775
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 529377 as yet unmatched pairs. 6819 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr13:109,784,275
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 528078 as yet unmatched pairs. 5512 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr13:112,068,289
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 524518 as yet unmatched pairs. 1942 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr14:20,996,613
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 522298 as yet unmatched pairs. 43559 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:21,489,194
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 519332 as yet unmatched pairs. 40590 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:22,928,572
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 517227 as yet unmatched pairs. 38484 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr14:24,094,401
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 515190 as yet unmatched pairs. 36444 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr14:30,649,557
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 512817 as yet unmatched pairs. 34064 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:35,402,046
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 510536 as yet unmatched pairs. 31780 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,670
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 517133 as yet unmatched pairs. 38364 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:50,323,942
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 507448 as yet unmatched pairs. 28654 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:55,351,029
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 505324 as yet unmatched pairs. 26516 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr14:60,734,834
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 503440 as yet unmatched pairs. 24625 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr14:64,454,800
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 501545 as yet unmatched pairs. 22717 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:69,387,032
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 500407 as yet unmatched pairs. 21572 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr14:73,729,947
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 496854 as yet unmatched pairs. 17999 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr14:77,025,966
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 495309 as yet unmatched pairs. 16448 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr14:90,397,108
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 493700 as yet unmatched pairs. 14834 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr14:95,108,008
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 490251 as yet unmatched pairs. 11381 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr14:99,517,147
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 488189 as yet unmatched pairs. 9292 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr14:102,017,432
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 486075 as yet unmatched pairs. 7170 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr14:102,929,467
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 483345 as yet unmatched pairs. 4431 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr14:104,773,066
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 481024 as yet unmatched pairs. 2091 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:22,881,897
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 478832 as yet unmatched pairs. 39754 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:30,646,183
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 476704 as yet unmatched pairs. 37618 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr15:40,106,038
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 474808 as yet unmatched pairs. 35708 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:41,567,358
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 472563 as yet unmatched pairs. 33448 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:42,686,183
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 470517 as yet unmatched pairs. 31397 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:43,527,926
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 468919 as yet unmatched pairs. 29797 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr15:45,043,258
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 467229 as yet unmatched pairs. 28094 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:51,499,705
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 464245 as yet unmatched pairs. 25105 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:57,232,403
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 465318 as yet unmatched pairs. 26166 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr15:60,447,924
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 460138 as yet unmatched pairs. 20979 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr15:65,095,178
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 457972 as yet unmatched pairs. 18793 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr15:68,776,699
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 455800 as yet unmatched pairs. 16615 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr15:72,265,119
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 454088 as yet unmatched pairs. 14892 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr15:74,854,104
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 451555 as yet unmatched pairs. 12355 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr15:76,949,104
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 449289 as yet unmatched pairs. 10079 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr15:81,002,481
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 446630 as yet unmatched pairs. 7414 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr15:86,664,673
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 444748 as yet unmatched pairs. 5522 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr15:90,473,773
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 442607 as yet unmatched pairs. 3378 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr15:96,337,399
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 441652 as yet unmatched pairs. 2420 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr16:399,387
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 439080 as yet unmatched pairs. 76876 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:870,740
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 435177 as yet unmatched pairs. 72964 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr16:1,760,468
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 432519 as yet unmatched pairs. 70293 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr16:2,091,866
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 429571 as yet unmatched pairs. 67334 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:2,519,277
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 427670 as yet unmatched pairs. 65422 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:2,770,370
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 425793 as yet unmatched pairs. 63542 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:3,751,745
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 422997 as yet unmatched pairs. 60738 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:8,855,072
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 420763 as yet unmatched pairs. 58493 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:14,218,859
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 418163 as yet unmatched pairs. 55883 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:15,040,036
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 416903 as yet unmatched pairs. 54623 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:16,325,449
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 415515 as yet unmatched pairs. 53223 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:18,358,284
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 415001 as yet unmatched pairs. 52709 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:19,503,485
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 413549 as yet unmatched pairs. 51255 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,772
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 413328 as yet unmatched pairs. 51033 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,141
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 411154 as yet unmatched pairs. 48857 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:24,361,530
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 408984 as yet unmatched pairs. 46673 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:28,146,106
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 407294 as yet unmatched pairs. 44975 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:28,834,093
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 405517 as yet unmatched pairs. 43194 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,789
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 403976 as yet unmatched pairs. 41651 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:30,001,473
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 402119 as yet unmatched pairs. 39792 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:30,408,089
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 399875 as yet unmatched pairs. 37546 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:30,782,623
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 397472 as yet unmatched pairs. 35131 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr16:31,183,993
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 403802 as yet unmatched pairs. 41454 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr16:31,190,387
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 400857 as yet unmatched pairs. 38509 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:48,561,057
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 391095 as yet unmatched pairs. 28740 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:55,810,519
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 394708 as yet unmatched pairs. 32349 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr16:57,769,829
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 386923 as yet unmatched pairs. 24558 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:66,808,565
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 385972 as yet unmatched pairs. 23598 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:67,870,829
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 382654 as yet unmatched pairs. 20277 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:69,462,490
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 380031 as yet unmatched pairs. 17647 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:70,565,385
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 377840 as yet unmatched pairs. 15452 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:74,406,653
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 375574 as yet unmatched pairs. 13175 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:75,504,744
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 373340 as yet unmatched pairs. 10936 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:84,759,457
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 371231 as yet unmatched pairs. 8814 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:88,652,508
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 370191 as yet unmatched pairs. 7761 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:89,283,632
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 366332 as yet unmatched pairs. 3895 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr16:89,814,579
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 364005 as yet unmatched pairs. 1562 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 2s. Last read position: chr17:1,345,438
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 372349 as yet unmatched pairs. 89144 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:1,651,263
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 359543 as yet unmatched pairs. 76333 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr17:2,375,657
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 357351 as yet unmatched pairs. 74131 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr17:4,672,582
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 355089 as yet unmatched pairs. 71863 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:5,433,021
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 353077 as yet unmatched pairs. 69849 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:7,307,692
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 350557 as yet unmatched pairs. 67326 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:7,511,945
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 348282 as yet unmatched pairs. 65044 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr17:7,688,995
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 346127 as yet unmatched pairs. 62881 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 2s. Last read position: chr17:8,205,363
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 343763 as yet unmatched pairs. 60515 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:15,700,303
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 341107 as yet unmatched pairs. 57854 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:17,264,934
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 339302 as yet unmatched pairs. 56048 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:18,671,766
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 336646 as yet unmatched pairs. 53383 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:28,350,766
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 334443 as yet unmatched pairs. 51173 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:28,749,195
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 332869 as yet unmatched pairs. 49595 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr17:30,286,859
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 330080 as yet unmatched pairs. 46799 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:35,442,077
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 327663 as yet unmatched pairs. 44372 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,097
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 327444 as yet unmatched pairs. 44149 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:41,688,896
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 323599 as yet unmatched pairs. 40303 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 138s. Last read position: chr17:43,110,491
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 321384 as yet unmatched pairs. 38081 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:45,518,223
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 319029 as yet unmatched pairs. 35722 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:48,075,005
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 317330 as yet unmatched pairs. 34016 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:49,607,874
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 315137 as yet unmatched pairs. 31815 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr17:51,195,222
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 312710 as yet unmatched pairs. 29387 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:59,267,112
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 310355 as yet unmatched pairs. 27028 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,759
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 313846 as yet unmatched pairs. 30515 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:62,426,396
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 306414 as yet unmatched pairs. 23076 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:64,506,141
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 303804 as yet unmatched pairs. 20463 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr17:68,512,468
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 302124 as yet unmatched pairs. 18777 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:75,238,665
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 299704 as yet unmatched pairs. 16354 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:76,293,502
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 297230 as yet unmatched pairs. 13873 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:78,820,991
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 294981 as yet unmatched pairs. 11611 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr17:81,231,863
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 292589 as yet unmatched pairs. 9209 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 2s. Last read position: chr17:81,696,969
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 290107 as yet unmatched pairs. 6723 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr17:82,051,952
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 287651 as yet unmatched pairs. 4261 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:82,443,448
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 285283 as yet unmatched pairs. 1893 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr18:2,728,462
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 282512 as yet unmatched pairs. 16875 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr18:10,471,932
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 281844 as yet unmatched pairs. 16200 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr18:21,703,648
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 277973 as yet unmatched pairs. 12322 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr18:36,027,266
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 276108 as yet unmatched pairs. 10453 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr18:47,075,347
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 274035 as yet unmatched pairs. 8379 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr18:53,416,140
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 271933 as yet unmatched pairs. 6263 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr18:59,227,224
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 270485 as yet unmatched pairs. 4804 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr18:70,324,880
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 267442 as yet unmatched pairs. 1751 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 2s. Last read position: chr19:581,509
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 267448 as yet unmatched pairs. 118847 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:1,010,487
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 263171 as yet unmatched pairs. 114567 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:1,278,851
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 259799 as yet unmatched pairs. 111195 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr19:1,625,619
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 259705 as yet unmatched pairs. 111099 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr19:2,230,188
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 254171 as yet unmatched pairs. 105561 records in RAM.
INFO 2026-06-08 09:05:15 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 2s. Last read position: chr19:3,056,342
INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 253116 as yet unmatched pairs. 104506 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:4,208,784
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 248681 as yet unmatched pairs. 100067 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:4,954,801
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 246871 as yet unmatched pairs. 98254 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:5,649,474
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 243790 as yet unmatched pairs. 95172 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:6,417,034
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 241681 as yet unmatched pairs. 93063 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:7,905,037
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 238645 as yet unmatched pairs. 90022 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:9,838,490
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 236622 as yet unmatched pairs. 87995 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:10,354,553
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 233588 as yet unmatched pairs. 84959 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:10,920,554
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 231173 as yet unmatched pairs. 82542 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:11,436,162
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 229025 as yet unmatched pairs. 80393 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:12,800,188
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 226884 as yet unmatched pairs. 78251 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:13,762,298
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 223948 as yet unmatched pairs. 75309 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 2s. Last read position: chr19:14,478,450
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 221481 as yet unmatched pairs. 72840 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 2s. Last read position: chr19:15,243,452
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 220007 as yet unmatched pairs. 71363 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:15,425,251
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 217161 as yet unmatched pairs. 68516 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:17,211,862
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 214430 as yet unmatched pairs. 65776 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:18,168,512
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 211889 as yet unmatched pairs. 63229 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:18,742,909
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 209707 as yet unmatched pairs. 61045 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:19,502,025
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 206864 as yet unmatched pairs. 58201 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:32,904,712
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 204446 as yet unmatched pairs. 55777 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:35,542,886
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 201782 as yet unmatched pairs. 53107 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:36,141,135
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 199363 as yet unmatched pairs. 50681 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:38,844,040
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 198200 as yet unmatched pairs. 49515 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:39,471,422
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 194632 as yet unmatched pairs. 45945 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:40,256,952
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 194839 as yet unmatched pairs. 46142 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:41,292,476
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 190041 as yet unmatched pairs. 41341 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:42,224,398
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 187466 as yet unmatched pairs. 38764 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr19:42,293,738
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 186168 as yet unmatched pairs. 37466 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:44,882,332
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 182795 as yet unmatched pairs. 34083 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:45,785,810
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 180255 as yet unmatched pairs. 31540 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:46,919,139
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 177729 as yet unmatched pairs. 29013 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:48,153,872
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 175670 as yet unmatched pairs. 26952 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:48,965,846
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 173195 as yet unmatched pairs. 24474 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,916
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 170866 as yet unmatched pairs. 22144 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:49,658,241
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 167747 as yet unmatched pairs. 19023 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:49,884,465
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 164665 as yet unmatched pairs. 15937 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:50,667,611
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 162173 as yet unmatched pairs. 13440 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:54,152,942
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 160534 as yet unmatched pairs. 11798 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:55,388,244
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 157358 as yet unmatched pairs. 8614 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:56,313,293
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 154160 as yet unmatched pairs. 5413 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:57,682,127
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 152300 as yet unmatched pairs. 3553 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:58,548,389
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 150658 as yet unmatched pairs. 1911 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 2s. Last read position: chr20:1,392,833
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 149459 as yet unmatched pairs. 35660 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr20:3,785,392
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 145187 as yet unmatched pairs. 31387 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chr20:10,639,525
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 142110 as yet unmatched pairs. 28302 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr20:20,039,730
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 140012 as yet unmatched pairs. 26200 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr20:31,721,846
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 137713 as yet unmatched pairs. 23901 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr20:34,089,872
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 137045 as yet unmatched pairs. 23229 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr20:35,630,892
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 133668 as yet unmatched pairs. 19848 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr20:37,225,693
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 130878 as yet unmatched pairs. 17055 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr20:41,617,047
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 128344 as yet unmatched pairs. 14520 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr20:45,424,239
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 126259 as yet unmatched pairs. 12435 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr20:48,745,086
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 124293 as yet unmatched pairs. 10468 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr20:50,894,315
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 122108 as yet unmatched pairs. 8282 records in RAM.
INFO 2026-06-08 09:06:50 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 2s. Last read position: chr20:58,909,963
INFO 2026-06-08 09:06:50 MarkDuplicates Tracking 119967 as yet unmatched pairs. 6138 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr20:62,842,075
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 116623 as yet unmatched pairs. 2787 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chr20:64,027,030
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 114084 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr21:8,212,292
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 112638 as yet unmatched pairs. 20352 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,180
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 110560 as yet unmatched pairs. 18265 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,915
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 109621 as yet unmatched pairs. 17326 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,737
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 108857 as yet unmatched pairs. 16561 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr21:8,435,857
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 108279 as yet unmatched pairs. 15977 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,078
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 106912 as yet unmatched pairs. 14610 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr21:14,375,677
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 105455 as yet unmatched pairs. 13149 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr21:29,327,034
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 103462 as yet unmatched pairs. 11155 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 2s. Last read position: chr21:33,554,087
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 101523 as yet unmatched pairs. 9216 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr21:37,478,225
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 99113 as yet unmatched pairs. 6801 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr21:43,719,303
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 97148 as yet unmatched pairs. 4831 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr21:45,531,928
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 95608 as yet unmatched pairs. 3290 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr22:17,739,415
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 92038 as yet unmatched pairs. 36808 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr22:20,115,675
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 89735 as yet unmatched pairs. 34497 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr22:21,696,733
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 87435 as yet unmatched pairs. 32194 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr22:23,894,866
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 85700 as yet unmatched pairs. 30458 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr22:28,297,696
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 82643 as yet unmatched pairs. 27401 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr22:29,292,595
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 81863 as yet unmatched pairs. 26621 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr22:30,427,345
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 78651 as yet unmatched pairs. 23408 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr22:32,493,159
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 76016 as yet unmatched pairs. 20773 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr22:37,024,388
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 73746 as yet unmatched pairs. 18498 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 2s. Last read position: chr22:38,495,816
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 71427 as yet unmatched pairs. 16178 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr22:39,532,409
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 68668 as yet unmatched pairs. 13418 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr22:41,332,218
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 66634 as yet unmatched pairs. 11384 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr22:42,059,869
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 63953 as yet unmatched pairs. 8702 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr22:44,916,453
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 61729 as yet unmatched pairs. 6475 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr22:49,962,947
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 59349 as yet unmatched pairs. 4095 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr22:50,504,892
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 56828 as yet unmatched pairs. 1571 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chrX:2,714,428
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 57839 as yet unmatched pairs. 44218 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:16,743,825
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 51670 as yet unmatched pairs. 38048 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chrX:25,185,816
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 49281 as yet unmatched pairs. 35646 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chrX:41,186,538
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 47573 as yet unmatched pairs. 33937 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chrX:47,206,394
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 45679 as yet unmatched pairs. 32042 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chrX:48,802,752
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 42840 as yet unmatched pairs. 29203 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chrX:51,893,713
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 42182 as yet unmatched pairs. 28545 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chrX:53,194,629
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 38668 as yet unmatched pairs. 25031 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chrX:53,604,634
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 36392 as yet unmatched pairs. 22755 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chrX:65,739,011
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 34681 as yet unmatched pairs. 21044 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chrX:71,299,985
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 33064 as yet unmatched pairs. 19427 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chrX:77,664,645
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 30503 as yet unmatched pairs. 16866 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 2s. Last read position: chrX:85,901,084
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 27985 as yet unmatched pairs. 14348 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chrX:109,644,079
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 26137 as yet unmatched pairs. 12500 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chrX:124,334,276
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 23782 as yet unmatched pairs. 10143 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chrX:135,293,825
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 21620 as yet unmatched pairs. 7981 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chrX:150,987,182
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 19819 as yet unmatched pairs. 6178 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chrX:154,032,278
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 17337 as yet unmatched pairs. 3694 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chrX:154,442,534
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 15062 as yet unmatched pairs. 1418 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chrM:6,612
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 14313 as yet unmatched pairs. 2385 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: GL000220.1:107,967
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 12064 as yet unmatched pairs. 3743 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,263
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 8480 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: GL000220.1:156,781
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 8476 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,770
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 8323 as yet unmatched pairs. 1 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,930
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 9382 as yet unmatched pairs. 9324 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,628
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 3432 as yet unmatched pairs. 3374 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,988
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 609 as yet unmatched pairs. 551 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,706
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 62 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 636157740 records. 0 pairs never matched.
INFO 2026-06-08 09:09:15 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138600; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:09:15 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:09:21 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:09:21 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,866
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,006
INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,783
INFO 2026-06-08 09:10:09 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:10:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,824
INFO 2026-06-08 09:10:09 OpticalDuplicateFinder Large duplicate set. size = 1200
INFO 2026-06-08 09:10:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,907
INFO 2026-06-08 09:10:29 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:10:29 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:11:33 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:11:42 MarkDuplicates After generateDuplicateIndexes freeMemory: 10725581504; totalMemory: 26675773440; maxMemory: 63585648640
INFO 2026-06-08 09:11:42 MarkDuplicates Marking 266852619 records as duplicates.
INFO 2026-06-08 09:11:42 MarkDuplicates Found 15061199 optical duplicate clusters.
INFO 2026-06-08 09:11:42 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:12:00 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,068,614
INFO 2026-06-08 09:12:19 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 18s. Last read position: chr1:42,683,430
INFO 2026-06-08 09:12:39 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:56s. Time for last 10,000,000: 20s. Last read position: chr1:97,740,435
INFO 2026-06-08 09:12:57 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:15s. Time for last 10,000,000: 18s. Last read position: chr1:150,496,819
INFO 2026-06-08 09:13:15 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:32s. Time for last 10,000,000: 17s. Last read position: chr1:171,522,177
INFO 2026-06-08 09:13:34 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:51s. Time for last 10,000,000: 18s. Last read position: chr1:220,157,278
INFO 2026-06-08 09:13:52 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:09s. Time for last 10,000,000: 18s. Last read position: chr2:27,226,227
INFO 2026-06-08 09:14:09 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 17s. Last read position: chr2:55,315,981
INFO 2026-06-08 09:14:27 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:44s. Time for last 10,000,000: 17s. Last read position: chr2:109,585,729
INFO 2026-06-08 09:14:45 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:02s. Time for last 10,000,000: 17s. Last read position: chr2:190,927,195
INFO 2026-06-08 09:15:02 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:19s. Time for last 10,000,000: 17s. Last read position: chr2:217,804,585
INFO 2026-06-08 09:15:20 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:37s. Time for last 10,000,000: 17s. Last read position: chr3:16,269,266
INFO 2026-06-08 09:15:38 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:55s. Time for last 10,000,000: 17s. Last read position: chr3:123,209,317
INFO 2026-06-08 09:15:56 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:13s. Time for last 10,000,000: 17s. Last read position: chr3:194,137,801
INFO 2026-06-08 09:16:13 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:30s. Time for last 10,000,000: 17s. Last read position: chr4:76,996,452
INFO 2026-06-08 09:16:31 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:48s. Time for last 10,000,000: 17s. Last read position: chr5:6,604,671
INFO 2026-06-08 09:16:49 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:06s. Time for last 10,000,000: 17s. Last read position: chr5:81,665,302
INFO 2026-06-08 09:17:06 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 17s. Last read position: chr5:147,583,848
INFO 2026-06-08 09:17:24 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 17s. Last read position: chr6:7,230,982
INFO 2026-06-08 09:17:41 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:58s. Time for last 10,000,000: 17s. Last read position: chr6:31,880,147
INFO 2026-06-08 09:17:59 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:16s. Time for last 10,000,000: 17s. Last read position: chr6:87,701,809
INFO 2026-06-08 09:18:16 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 17s. Last read position: chr7:2,360,784
INFO 2026-06-08 09:18:34 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 17s. Last read position: chr7:74,115,838
INFO 2026-06-08 09:18:51 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:08s. Time for last 10,000,000: 17s. Last read position: chr7:119,691,839
INFO 2026-06-08 09:19:09 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:26s. Time for last 10,000,000: 17s. Last read position: chr8:22,098,294
INFO 2026-06-08 09:19:26 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:43s. Time for last 10,000,000: 17s. Last read position: chr8:76,704,721
INFO 2026-06-08 09:19:44 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:01s. Time for last 10,000,000: 17s. Last read position: chr9:9,442,138
INFO 2026-06-08 09:20:01 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:18s. Time for last 10,000,000: 17s. Last read position: chr9:113,203,013
INFO 2026-06-08 09:20:19 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:36s. Time for last 10,000,000: 17s. Last read position: chr9:136,517,360
INFO 2026-06-08 09:20:36 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:53s. Time for last 10,000,000: 17s. Last read position: chr10:58,287,594
INFO 2026-06-08 09:20:54 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:11s. Time for last 10,000,000: 17s. Last read position: chr10:113,158,026
INFO 2026-06-08 09:21:11 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 17s. Last read position: chr11:34,096,515
INFO 2026-06-08 09:21:29 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:46s. Time for last 10,000,000: 17s. Last read position: chr11:62,721,849
INFO 2026-06-08 09:21:46 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 17s. Last read position: chr11:71,444,863
INFO 2026-06-08 09:22:03 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:20s. Time for last 10,000,000: 17s. Last read position: chr11:126,277,592
INFO 2026-06-08 09:22:21 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:38s. Time for last 10,000,000: 17s. Last read position: chr12:47,965,978
INFO 2026-06-08 09:22:38 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:55s. Time for last 10,000,000: 17s. Last read position: chr12:57,099,724
INFO 2026-06-08 09:22:55 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:12s. Time for last 10,000,000: 17s. Last read position: chr12:112,406,756
INFO 2026-06-08 09:23:13 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:30s. Time for last 10,000,000: 17s. Last read position: chr13:30,657,631
INFO 2026-06-08 09:23:30 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:47s. Time for last 10,000,000: 17s. Last read position: chr14:20,996,613
INFO 2026-06-08 09:23:48 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:05s. Time for last 10,000,000: 17s. Last read position: chr14:64,454,800
INFO 2026-06-08 09:24:05 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:22s. Time for last 10,000,000: 17s. Last read position: chr15:22,881,897
INFO 2026-06-08 09:24:22 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:40s. Time for last 10,000,000: 17s. Last read position: chr15:65,095,178
INFO 2026-06-08 09:24:40 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:57s. Time for last 10,000,000: 17s. Last read position: chr16:870,740
INFO 2026-06-08 09:24:57 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 17s. Last read position: chr16:18,358,284
INFO 2026-06-08 09:25:14 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:31s. Time for last 10,000,000: 17s. Last read position: chr16:30,782,623
INFO 2026-06-08 09:25:31 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 17s. Last read position: chr16:74,406,653
INFO 2026-06-08 09:25:48 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 17s. Last read position: chr17:5,433,021
INFO 2026-06-08 09:26:06 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:23s. Time for last 10,000,000: 17s. Last read position: chr17:30,286,859
INFO 2026-06-08 09:26:24 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 18s. Last read position: chr17:59,682,759
INFO 2026-06-08 09:26:43 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:00s. Time for last 10,000,000: 18s. Last read position: chr17:82,443,448
INFO 2026-06-08 09:27:00 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:17s. Time for last 10,000,000: 17s. Last read position: chr19:1,010,487
INFO 2026-06-08 09:27:18 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:35s. Time for last 10,000,000: 18s. Last read position: chr19:9,838,490
INFO 2026-06-08 09:27:36 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:53s. Time for last 10,000,000: 17s. Last read position: chr19:18,168,512
INFO 2026-06-08 09:27:54 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:11s. Time for last 10,000,000: 18s. Last read position: chr19:42,224,398
INFO 2026-06-08 09:28:11 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:28s. Time for last 10,000,000: 17s. Last read position: chr19:50,667,611
INFO 2026-06-08 09:28:28 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:45s. Time for last 10,000,000: 17s. Last read position: chr20:31,721,846
INFO 2026-06-08 09:28:46 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:03s. Time for last 10,000,000: 17s. Last read position: chr20:64,027,030
INFO 2026-06-08 09:29:02 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:19s. Time for last 10,000,000: 15s. Last read position: chr21:37,478,225
INFO 2026-06-08 09:29:20 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:37s. Time for last 10,000,000: 17s. Last read position: chr22:32,493,159
INFO 2026-06-08 09:29:37 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:54s. Time for last 10,000,000: 17s. Last read position: chrX:16,743,825
INFO 2026-06-08 09:29:55 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:12s. Time for last 10,000,000: 17s. Last read position: chrX:77,664,645
INFO 2026-06-08 09:30:12 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:29s. Time for last 10,000,000: 17s. Last read position: GL000220.1:116,263
INFO 2026-06-08 09:30:30 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:30:30 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:30:30 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:30:30 MarkDuplicates Before output close freeMemory: 201641960; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:30:30 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:30:30 MarkDuplicates After output close freeMemory: 104158272; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:30:30 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 44.40 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory