.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (A549_FFPE_01_RNA_0001_B23LG7FLT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/720ac1e042438df6cb32a4c7672557/.command.sh
Size: 777 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (A549_FFPE_01_RNA_0001_B23LG7FLT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
cat A549_FFPE_01_RNA_0001_B23LG7FLT4_2_S11_L001_R1_001.fastq.gz A549_FFPE_01_RNA_0001_B23LG7FLT4_2_S11_L002_R1_001.fastq.gz A549_FFPE_01_RNA_0001_B23LG7FLT4_2_S11_L003_R1_001.fastq.gz A549_FFPE_01_RNA_0001_B23LG7FLT4_2_S11_L004_R1_001.fastq.gz > A549_FFPE_01_RNA_0001_B23LG7FLT4_2_R1.fastq.gz
cat A549_FFPE_01_RNA_0001_B23LG7FLT4_2_S11_L001_R2_001.fastq.gz A549_FFPE_01_RNA_0001_B23LG7FLT4_2_S11_L002_R2_001.fastq.gz A549_FFPE_01_RNA_0001_B23LG7FLT4_2_S11_L003_R2_001.fastq.gz A549_FFPE_01_RNA_0001_B23LG7FLT4_2_S11_L004_R2_001.fastq.gz > A549_FFPE_01_RNA_0001_B23LG7FLT4_2_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS