[W::hts_idx_load3] The index file is older than the data file: BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	42612552
Known Splicing Events:	42127037
Partial Novel Splicing Events:	239674
Novel Splicing Events:	215735
Filtered Splicing Events:	30106

Total splicing  Junctions:	142566
Known Splicing Junctions:	128692
Partial Novel Splicing Junctions:	5526
Novel Splicing Junctions:	8348

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Create BED file ...
Create Interact file ...