File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/9ffbb1bb1a1a65cb7c7296ad1f9024/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (786-O_FFPE_RNA_0001_B23LG7FLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/13a0da7a90913d31925104f03d721b/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/9ffbb1bb1a1a65cb7c7296ad1f9024/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/46684ef348b139d247eeb2ee8b39ae/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/9ffbb1bb1a1a65cb7c7296ad1f9024/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/d4c8b5afe08cd46361b538a8d10336/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 317767072
[W::hts_idx_load3] The index file is older than the data file: 786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	317767072
Known Splicing Events:	315384177
Partial Novel Splicing Events:	1635102
Novel Splicing Events:	667750
Filtered Splicing Events:	80043

Total splicing  Junctions:	611346
Known Splicing Junctions:	279813
Partial Novel Splicing Junctions:	183957
Novel Splicing Junctions:	147576

===================================================================
Create BED file ...
Create Interact file ...