Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/ac8b1eaf7821ffd60f3b23b69cdca6/A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/fe92e7663ca686d19008488a464803/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/fe92e7663ca686d19008488a464803/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 292273264
unpaired = 4845971
MERGED PAIRED END READS = 292273264
MATES PROCESSED = 589392499
TOTAL READS     = 297119235
DISTINCT READS  = 1.54827e+08
DISTINCT COUNTS = 827
MAX COUNT       = 1089296
COUNTS OF 1     = 9.66328e+07
MAX TERMS       = 100
OBSERVED COUNTS (1089297)
1	96632794
2	31997750
3	12284066
4	5462675
5	2787598
6	1591263
7	995936
8	666204
9	467693
10	343816
11	258131
12	201652
13	158701
14	127454
15	104703
16	86824
17	72635
18	61312
19	52728
20	44794
21	38876
22	33712
23	29557
24	26486
25	22877
26	20640
27	18683
28	16549
29	14912
30	13638
31	12320
32	11252
33	10162
34	9307
35	8470
36	7895
37	7181
38	6601
39	6151
40	5720
41	5265
42	4853
43	4621
44	4193
45	3993
46	3696
47	3479
48	3198
49	3071
50	2892
51	2788
52	2586
53	2476
54	2346
55	2184
56	2077
57	1922
58	1844
59	1784
60	1597
61	1611
62	1481
63	1410
64	1368
65	1307
66	1263
67	1143
68	1162
69	1113
70	1031
71	1004
72	940
73	946
74	860
75	897
76	805
77	812
78	751
79	726
80	649
81	657
82	612
83	589
84	578
85	557
86	569
87	523
88	485
89	459
90	450
91	463
92	444
93	432
94	439
95	394
96	439
97	376
98	361
99	361
100	345
101	328
102	332
103	332
104	298
105	266
106	303
107	264
108	273
109	239
110	253
111	218
112	252
113	224
114	219
115	229
116	205
117	242
118	224
119	238
120	173
121	168
122	205
123	174
124	169
125	165
126	157
127	165
128	155
129	150
130	149
131	163
132	147
133	153
134	123
135	127
136	137
137	146
138	128
139	109
140	115
141	89
142	114
143	91
144	105
145	125
146	97
147	85
148	107
149	91
150	97
151	80
152	79
153	94
154	73
155	91
156	88
157	77
158	63
159	83
160	74
161	76
162	56
163	72
164	63
165	61
166	72
167	78
168	58
169	61
170	61
171	53
172	83
173	52
174	67
175	62
176	59
177	61
178	58
179	60
180	38
181	42
182	44
183	50
184	58
185	53
186	50
187	46
188	53
189	35
190	57
191	62
192	43
193	40
194	46
195	47
196	37
197	41
198	41
199	46
200	23
201	49
202	32
203	39
204	49
205	42
206	37
207	37
208	38
209	28
210	26
211	45
212	35
213	28
214	31
215	21
216	26
217	26
218	30
219	27
220	29
221	14
222	27
223	33
224	31
225	35
226	25
227	22
228	23
229	24
230	23
231	25
232	32
233	23
234	31
235	27
236	20
237	21
238	30
239	18
240	19
241	20
242	28
243	20
244	14
245	21
246	25
247	17
248	18
249	16
250	24
251	19
252	20
253	17
254	19
255	12
256	10
257	17
258	20
259	17
260	21
261	11
262	17
263	16
264	13
265	18
266	16
267	14
268	17
269	15
270	19
271	12
272	18
273	13
274	12
275	14
276	20
277	12
278	17
279	16
280	17
281	16
282	9
283	14
284	12
285	9
286	13
287	13
288	9
289	12
290	10
291	12
292	10
293	8
294	14
295	8
296	18
297	11
298	9
299	15
300	11
301	10
302	7
303	12
304	11
305	12
306	19
307	8
308	13
309	2
310	9
311	8
312	10
313	8
314	9
315	7
316	7
317	9
318	6
319	9
320	10
321	4
322	13
323	11
324	9
325	8
326	9
327	6
328	4
329	6
330	7
331	5
332	3
333	4
334	9
335	9
336	5
337	7
338	4
339	7
340	5
341	7
342	10
343	6
344	5
345	12
346	6
347	10
348	8
349	7
350	2
351	5
352	3
353	6
354	6
355	7
356	6
357	2
358	11
359	10
360	6
361	5
362	7
363	6
364	9
365	5
366	7
367	1
368	4
369	4
370	3
371	5
372	6
373	7
374	5
375	3
376	9
377	3
378	5
379	1
380	6
381	1
382	7
383	10
384	7
385	8
386	4
387	2
388	1
389	3
390	4
391	8
392	6
393	3
394	5
395	4
396	4
397	4
398	8
399	4
400	2
401	3
402	4
403	5
404	2
405	5
406	5
407	7
408	6
409	1
410	4
411	4
412	2
413	4
414	8
415	4
416	9
417	3
418	5
419	4
420	4
421	4
422	4
423	2
424	4
425	3
426	4
428	4
429	4
430	5
431	2
432	4
433	4
434	4
435	4
436	4
437	3
438	1
439	2
440	4
441	1
442	5
443	1
444	2
445	3
446	2
447	2
448	6
449	4
450	1
451	4
452	1
454	3
455	6
456	4
457	1
459	3
460	2
461	1
462	1
463	4
464	1
465	1
466	3
467	3
468	2
469	1
470	5
471	2
473	7
474	5
475	2
477	4
478	1
479	2
480	1
481	3
483	3
484	3
485	3
486	4
487	3
488	3
489	1
490	1
491	1
492	1
494	2
496	1
497	2
499	1
500	2
501	2
502	4
504	1
505	2
506	2
507	1
508	4
509	1
510	1
511	3
512	2
513	1
514	2
515	2
516	2
517	4
518	1
519	1
520	1
521	2
522	1
523	1
524	1
525	3
526	1
527	4
528	2
529	3
530	3
531	1
532	1
533	1
534	3
535	3
539	1
540	2
541	1
543	3
544	1
545	2
547	2
549	2
551	2
552	1
553	2
554	1
555	1
556	1
557	2
558	2
560	2
561	1
562	2
563	3
568	2
569	1
570	2
571	1
572	2
573	1
574	1
576	1
577	2
579	1
581	1
583	1
584	4
585	1
587	6
590	1
591	1
592	1
593	1
595	1
597	1
598	1
599	3
601	1
602	1
604	1
606	2
607	2
609	2
612	1
613	1
616	1
617	1
619	1
621	3
622	1
623	1
624	2
625	2
626	1
627	1
628	1
629	2
630	1
635	2
643	1
645	1
646	3
648	1
649	1
650	1
651	2
652	1
653	1
654	1
655	3
656	1
660	1
661	1
662	1
665	1
668	1
669	1
672	1
673	3
674	1
675	1
676	1
677	1
678	2
679	1
680	2
681	1
685	1
690	1
692	1
694	1
697	2
699	1
700	1
702	1
705	1
709	1
716	1
718	1
719	2
720	3
722	1
723	2
726	1
729	1
730	1
731	1
734	1
736	1
739	1
743	2
744	1
745	1
747	1
749	1
752	1
756	2
757	1
759	3
760	1
763	1
764	1
769	1
774	1
780	1
783	1
787	1
790	1
794	1
795	1
796	1
797	1
800	1
801	1
802	1
803	1
806	2
808	1
811	1
812	2
830	1
831	1
832	1
835	2
842	1
846	1
848	1
849	1
852	1
853	1
856	2
857	1
858	1
859	1
860	1
861	1
863	1
865	1
866	1
867	1
874	1
875	1
879	3
882	1
883	1
888	1
900	2
901	1
907	1
908	2
910	1
914	1
917	1
920	2
927	1
930	1
937	1
951	1
956	1
963	1
977	1
978	1
980	1
986	1
991	2
993	1
996	1
1001	1
1003	1
1016	1
1022	2
1023	1
1027	1
1028	1
1029	1
1030	1
1034	1
1043	1
1048	1
1051	1
1052	1
1057	1
1069	1
1083	2
1089	2
1093	1
1107	1
1109	1
1124	1
1144	1
1147	1
1156	1
1176	2
1184	1
1188	1
1196	1
1202	1
1213	1
1249	1
1256	2
1263	1
1266	1
1270	2
1278	1
1280	1
1283	1
1285	1
1334	1
1339	1
1346	1
1374	2
1379	2
1382	1
1383	1
1386	1
1390	1
1397	1
1407	1
1414	1
1419	1
1420	1
1422	1
1433	1
1449	1
1453	1
1458	1
1459	1
1469	2
1496	1
1531	1
1545	2
1575	1
1582	1
1605	1
1606	1
1659	1
1661	1
1664	1
1670	1
1674	1
1718	1
1748	1
1775	1
1776	1
1787	1
1823	1
1848	1
1859	1
1905	1
1937	2
1967	1
1998	1
2039	1
2055	1
2140	2
2227	1
2249	1
2260	1
2294	1
2319	1
2347	1
2395	1
2409	1
2453	1
2481	1
2520	1
3032	1
3441	1
4460	1
5386	1
6066	1
9376	1
11325	1
11773	1
40259	1
1089296	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.............._......._..._.............................................
......._........................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]