.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/63b16d608f865a68bdf96914fbd6c9/.command.err
Size: 28.1 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1)
Attempt
Content

-ctat genome lib [/tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.w8G1RAj1YG/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary
-sample contains 40165314 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir  -J /tmp/nxf.w8G1RAj1YG/OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  -O /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.w8G1RAj1YG/OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[810000], rate=82512.73/min -building interval tree based on /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[810000], rate=74425.73/min -building interval tree based on /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[810000], rate=71787.30/min -building interval tree based on /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[810000], rate=68258.43/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5000000.00 reads per min processed...  
 5142857.14 reads per min processed...  
 4666666.67 reads per min processed...  
 4363636.36 reads per min processed...  
 4500000.00 reads per min processed...  
 4285714.29 reads per min processed...  
 3882352.94 reads per min processed...  
 3789473.68 reads per min processed...  
 3714285.71 reads per min processed...  
 3652173.91 reads per min processed...  
 3750000.00 reads per min processed...  
 3692307.69 reads per min processed...  
 3777777.78 reads per min processed...  
 3857142.86 reads per min processed...  
 3931034.48 reads per min processed...  
 3870967.74 reads per min processed...  
 3937500.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3942857.14 reads per min processed...  
 3891891.89 reads per min processed...  
 3947368.42 reads per min processed...  
 3900000.00 reads per min processed...  
 3857142.86 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.w8G1RAj1YG/OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -37852.007352
EM: Round [1] log likelihood: -37788.047288
EM: Round [2] log likelihood: -37758.964094
EM: Round [3] log likelihood: -37744.179274
EM: Round [4] log likelihood: -37736.266019
EM: Round [5] log likelihood: -37731.886301
EM: Round [6] log likelihood: -37729.379484
EM: Round [7] log likelihood: -37727.889478
EM: Round [8] log likelihood: -37726.967907
EM: Round [9] log likelihood: -37726.375413
EM: Round [10] log likelihood: -37725.980744
EM: Round [11] log likelihood: -37725.709546
EM: Round [12] log likelihood: -37725.518180
EM: Round [13] log likelihood: -37725.380104
EM: Round [14] log likelihood: -37725.278602
EM: Round [15] log likelihood: -37725.202811
EM: Round [16] log likelihood: -37725.145459
EM: Round [17] log likelihood: -37725.101560
EM: Round [18] log likelihood: -37725.067616
EM: Round [19] log likelihood: -37725.041131
EM: Round [20] log likelihood: -37725.020294
EM: Round [21] log likelihood: -37725.003773
EM: Round [22] log likelihood: -37724.990578
EM: Round [23] log likelihood: -37724.979966
EM: Round [24] log likelihood: -37724.971373
EM: Round [25] log likelihood: -37724.964370
EM: Round [26] log likelihood: -37724.958625
EM: Round [27] log likelihood: -37724.953883
EM: Round [28] log likelihood: -37724.949943
EM: Round [29] log likelihood: -37724.946649
EM: Round [30] log likelihood: -37724.943878
EM: Round [31] log likelihood: -37724.941533
EM: Round [32] log likelihood: -37724.939537
EM: Round [33] log likelihood: -37724.937826
EM: Round [34] log likelihood: -37724.936352
EM: Round [35] log likelihood: -37724.935074
EM: Round [36] log likelihood: -37724.933960
EM: Round [37] log likelihood: -37724.932984
EM: Round [38] log likelihood: -37724.932123
EM: Round [39] log likelihood: -37724.931361
EM: Round [40] log likelihood: -37724.930683
EM: Round [41] log likelihood: -37724.930076
EM: Round [42] log likelihood: -37724.929532
EM: Round [43] log likelihood: -37724.929040
EM: Round [44] log likelihood: -37724.928596
EM: Round [45] log likelihood: -37724.928192
EM: Round [46] log likelihood: -37724.927824
EM: Round [47] log likelihood: -37724.927487
EM: Round [48] log likelihood: -37724.927178
EM: Round [49] log likelihood: -37724.926894
EM: Round [50] log likelihood: -37724.926632
EM: Round [51] log likelihood: -37724.926390
EM: Round [52] log likelihood: -37724.926166
EM: Round [53] log likelihood: -37724.925959
EM: Round [54] log likelihood: -37724.925766
EM: Round [55] log likelihood: -37724.925586
EM: Round [56] log likelihood: -37724.925419
EM: Round [57] log likelihood: -37724.925263
EM: Round [58] log likelihood: -37724.925117
EM: Round [59] log likelihood: -37724.924980
EM: Round [60] log likelihood: -37724.924852
EM: Round [61] log likelihood: -37724.924732
EM: Round [62] log likelihood: -37724.924620
EM: Round [63] log likelihood: -37724.924514
EM: Round [64] log likelihood: -37724.924415
EM: Stopping iterations at round 64 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -37837.336363
EM: Round [1] log likelihood: -37779.160295
EM: Round [2] log likelihood: -37753.423124
EM: Round [3] log likelihood: -37740.656259
EM: Round [4] log likelihood: -37733.963989
EM: Round [5] log likelihood: -37730.333412
EM: Round [6] log likelihood: -37728.298553
EM: Round [7] log likelihood: -37727.115438
EM: Round [8] log likelihood: -37726.399776
EM: Round [9] log likelihood: -37725.949446
EM: Round [10] log likelihood: -37725.655445
EM: Round [11] log likelihood: -37725.457130
EM: Round [12] log likelihood: -37725.319567
EM: Round [13] log likelihood: -37725.221887
EM: Round [14] log likelihood: -37725.151176
EM: Round [15] log likelihood: -37725.099162
EM: Round [16] log likelihood: -37725.060390
EM: Round [17] log likelihood: -37725.031160
EM: Round [18] log likelihood: -37725.008905
EM: Round [19] log likelihood: -37724.991814
EM: Round [20] log likelihood: -37724.978583
EM: Round [21] log likelihood: -37724.968264
EM: Round [22] log likelihood: -37724.960160
EM: Round [23] log likelihood: -37724.953751
EM: Round [24] log likelihood: -37724.948649
EM: Round [25] log likelihood: -37724.944561
EM: Round [26] log likelihood: -37724.941263
EM: Round [27] log likelihood: -37724.938586
EM: Round [28] log likelihood: -37724.936397
EM: Round [29] log likelihood: -37724.934596
EM: Round [30] log likelihood: -37724.933104
EM: Round [31] log likelihood: -37724.931859
EM: Round [32] log likelihood: -37724.930814
EM: Round [33] log likelihood: -37724.929929
EM: Round [34] log likelihood: -37724.929176
EM: Round [35] log likelihood: -37724.928531
EM: Round [36] log likelihood: -37724.927974
EM: Round [37] log likelihood: -37724.927490
EM: Round [38] log likelihood: -37724.927067
EM: Round [39] log likelihood: -37724.926695
EM: Round [40] log likelihood: -37724.926366
EM: Round [41] log likelihood: -37724.926073
EM: Round [42] log likelihood: -37724.925811
EM: Round [43] log likelihood: -37724.925576
EM: Round [44] log likelihood: -37724.925364
EM: Round [45] log likelihood: -37724.925171
EM: Round [46] log likelihood: -37724.924996
EM: Round [47] log likelihood: -37724.924836
EM: Round [48] log likelihood: -37724.924689
EM: Round [49] log likelihood: -37724.924554
EM: Round [50] log likelihood: -37724.924430
EM: Round [51] log likelihood: -37724.924315
EM: Round [52] log likelihood: -37724.924208
EM: Round [53] log likelihood: -37724.924109
EM: Stopping iterations at round 53 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 40165314 > /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir > /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir --annotate /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir
-done, see /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 229, filtered: 3018)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.w8G1RAj1YG/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.w8G1RAj1YG/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000227288.3]
WARNING, no entry stored in dbm for [ENSG00000241735.2]
WARNING, no entry stored in dbm for [ENSG00000247081.8]
WARNING, no entry stored in dbm for [ENSG00000237686.7]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000259294.1]
WARNING, no entry stored in dbm for [ENSG00000259291.2]
WARNING, no entry stored in dbm for [ENSG00000287535.1]
WARNING, no entry stored in dbm for [ENSG00000264920.2]
WARNING, no entry stored in dbm for [ENSG00000276092.1]
WARNING, no entry stored in dbm for [ENSG00000267248.3]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000230454.1]
WARNING, no entry stored in dbm for [ENSG00000205583.13]
WARNING, no entry stored in dbm for [ENSG00000208023.3]
WARNING, no entry stored in dbm for [ENSG00000272143.1]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000185485.14]
WARNING, no entry stored in dbm for [ENSG00000273599.1]
WARNING, no entry stored in dbm for [ENSG00000279179.1]
WARNING, no entry stored in dbm for [ENSG00000237232.9]
WARNING, no entry stored in dbm for [ENSG00000233979.1]
WARNING, no entry stored in dbm for [ENSG00000265798.6]
WARNING, no entry stored in dbm for [ENSG00000278834.1]
WARNING, no entry stored in dbm for [ENSG00000236116.1]
WARNING, no entry stored in dbm for [ENSG00000273143.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000270866.1]
WARNING, no entry stored in dbm for [ENSG00000272578.5]
WARNING, no entry stored in dbm for [ENSG00000229359.2]
WARNING, no entry stored in dbm for [ENSG00000248449.2]
WARNING, no entry stored in dbm for [ENSG00000277739.1]
WARNING, no entry stored in dbm for [ENSG00000283568.1]
WARNING, no entry stored in dbm for [ENSG00000273129.2]
WARNING, no entry stored in dbm for [ENSG00000273129.2]
WARNING, no entry stored in dbm for [ENSG00000259275.4]
WARNING, no entry stored in dbm for [ENSG00000258288.1]
WARNING, no entry stored in dbm for [ENSG00000227632.2]
WARNING, no entry stored in dbm for [ENSG00000256916.1]
WARNING, no entry stored in dbm for [ENSG00000279162.1]
WARNING, no entry stored in dbm for [ENSG00000279171.1]
WARNING, no entry stored in dbm for [ENSG00000231566.2]
WARNING, no entry stored in dbm for [ENSG00000270069.1]
WARNING, no entry stored in dbm for [ENSG00000257747.2]
WARNING, no entry stored in dbm for [ENSG00000259605.3]
WARNING, no entry stored in dbm for [ENSG00000218347.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000225191.1]
WARNING, no entry stored in dbm for [ENSG00000184274.3]
WARNING, no entry stored in dbm for [ENSG00000228223.3]
WARNING, no entry stored in dbm for [ENSG00000280217.1]
WARNING, no entry stored in dbm for [ENSG00000287535.1]
WARNING, no entry stored in dbm for [ENSG00000197847.12]
WARNING, no entry stored in dbm for [ENSG00000250959.2]
WARNING, no entry stored in dbm for [ENSG00000265962.1]
WARNING, no entry stored in dbm for [ENSG00000255471.1]
WARNING, no entry stored in dbm for [ENSG00000228876.4]
WARNING, no entry stored in dbm for [ENSG00000281383.1]
WARNING, no entry stored in dbm for [ENSG00000280800.1]
WARNING, no entry stored in dbm for [ENSG00000281181.1]
WARNING, no entry stored in dbm for [ENSG00000280614.1]
WARNING, no entry stored in dbm for [ENSG00000244139.3]
WARNING, no entry stored in dbm for [ENSG00000214439.4]
WARNING, no entry stored in dbm for [ENSG00000249072.1]
WARNING, no entry stored in dbm for [ENSG00000279136.1]
WARNING, no entry stored in dbm for [ENSG00000248223.1]
WARNING, no entry stored in dbm for [ENSG00000228056.3]
WARNING, no entry stored in dbm for [ENSG00000281398.4]
WARNING, no entry stored in dbm for [ENSG00000271714.1]
WARNING, no entry stored in dbm for [ENSG00000177410.13]
WARNING, no entry stored in dbm for [ENSG00000287867.1]
WARNING, no entry stored in dbm for [ENSG00000254319.6]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000219201.4]
WARNING, no entry stored in dbm for [ENSG00000279837.1]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [ENSG00000240519.1]
WARNING, no entry stored in dbm for [ENSG00000218175.2]
WARNING, no entry stored in dbm for [ENSG00000273270.1]
WARNING, no entry stored in dbm for [ENSG00000276122.1]
WARNING, no entry stored in dbm for [ENSG00000251131.2]
WARNING, no entry stored in dbm for [ENSG00000259429.5]
WARNING, no entry stored in dbm for [ENSG00000197813.6]
WARNING, no entry stored in dbm for [ENSG00000259663.2]
WARNING, no entry stored in dbm for [ENSG00000272568.6]


	* STAR-Fusion complete.  See output: /tmp/nxf.w8G1RAj1YG/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)