Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/c7aaabecd31f922632ea5bb0a6241a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/157387f778f1700311366fb571ef46/fi_workdir/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/c7aaabecd31f922632ea5bb0a6241a/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 10647
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 10647
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:10647
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC005993.1--RGS6 ENSEMBL gene 16301 50680 . + . FI_gene_label "RGS6^ENSG00000182732.18" ; ID "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; exon_id "ENSE00003732696.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; gene_name RGS6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171340.6" ; hgnc_id "HGNC:10002" ; level 3 ; orig_coord_info "chr14,72352116,72352194,+" ; protein_id "ENSP00000341199.7" ; tag basic ; transcript_id "AC005993.1--RGS6^ENST00000343854.10" ; transcript_name "RGS6-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC005993.1--RGS6 ENSEMBL mRNA 16301 50680 . + . FI_gene_label "RGS6^ENSG00000182732.18" ; ID "AC005993.1--RGS6^ENST00000343854.10" ; Parent "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; exon_id "ENSE00003732696.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; gene_name RGS6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171340.6" ; hgnc_id "HGNC:10002" ; level 3 ; orig_coord_info "chr14,72352116,72352194,+" ; protein_id "ENSP00000341199.7" ; tag basic ; transcript_id "AC005993.1--RGS6^ENST00000343854.10" ; transcript_name "RGS6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC020550.2--APBA1 HAVANA gene 5135 29201 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC020550.2--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC020550.2--APBA1 HAVANA mRNA 5135 29201 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC020550.2--APBA1^ENST00000265381.7" ; Parent "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC020550.2--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC078846.1--SND1 HAVANA gene 11084 47679 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "AC078846.1--SND1^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "AC078846.1--SND1^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC078846.1--SND1^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC078846.1--SND1 HAVANA mRNA 11084 47679 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "AC078846.1--SND1^ENST00000354725.8" ; Parent "AC078846.1--SND1^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "AC078846.1--SND1^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC078846.1--SND1^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC097533.1--TRPC3 HAVANA gene 7002 21734 . + . FI_gene_label "TRPC3^ENSG00000138741.11" ; ID "AC097533.1--TRPC3^TRPC3^ENSG00000138741.11" ; ccdsid "CCDS3725.1" ; exon_id "ENSE00001176914.5" ; exon_number 1 ; gene_id "AC097533.1--TRPC3^TRPC3^ENSG00000138741.11" ; gene_name TRPC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133069.5" ; havana_transcript "OTTHUMT00000256709.1" ; hgnc_id "HGNC:12335" ; level 2 ; orig_coord_info "chr4,121932271,121933038,-" ; protein_id "ENSP00000264811.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "AC097533.1--TRPC3^ENST00000264811.9" ; transcript_name "TRPC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC097533.1--TRPC3 HAVANA mRNA 7002 21734 . + . FI_gene_label "TRPC3^ENSG00000138741.11" ; ID "AC097533.1--TRPC3^ENST00000264811.9" ; Parent "AC097533.1--TRPC3^TRPC3^ENSG00000138741.11" ; ccdsid "CCDS3725.1" ; exon_id "ENSE00001176914.5" ; exon_number 1 ; gene_id "AC097533.1--TRPC3^TRPC3^ENSG00000138741.11" ; gene_name TRPC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133069.5" ; havana_transcript "OTTHUMT00000256709.1" ; hgnc_id "HGNC:12335" ; level 2 ; orig_coord_info "chr4,121932271,121933038,-" ; protein_id "ENSP00000264811.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "AC097533.1--TRPC3^ENST00000264811.9" ; transcript_name "TRPC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC104041.1--APBA1 HAVANA gene 27146 51212 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC104041.1--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC104041.1--APBA1 HAVANA mRNA 27146 51212 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC104041.1--APBA1^ENST00000265381.7" ; Parent "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC104041.1--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACTBP6--ACTB HAVANA gene 6203 10583 . + . FI_gene_label "ACTB^ENSG00000075624.17" ; ID "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; exon_id "ENSE00003542066.1" ; exon_number 3 ; gene_id "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; gene_name ACTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023268.12" ; havana_transcript "OTTHUMT00000324028.2" ; hgnc_id "HGNC:132" ; level 2 ; orig_coord_info "chr7,5529535,5529657,-" ; protein_id "ENSP00000401032.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF dotter_confirmed ; transcript_id "ACTBP6--ACTB^ENST00000414620.1" ; transcript_name "ACTB-201" ; transcript_support_level 4 ; transcript_type protein_coding
ACTBP6--ACTB HAVANA mRNA 6203 10583 . + . FI_gene_label "ACTB^ENSG00000075624.17" ; ID "ACTBP6--ACTB^ENST00000414620.1" ; Parent "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; exon_id "ENSE00003542066.1" ; exon_number 3 ; gene_id "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; gene_name ACTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023268.12" ; havana_transcript "OTTHUMT00000324028.2" ; hgnc_id "HGNC:132" ; level 2 ; orig_coord_info "chr7,5529535,5529657,-" ; protein_id "ENSP00000401032.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF dotter_confirmed ; transcript_id "ACTBP6--ACTB^ENST00000414620.1" ; transcript_name "ACTB-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
AHCYL2--GLI3 HAVANA gene 1001 25253 . + . FI_gene_label "AHCYL2^ENSG00000158467.16" ; ID "AHCYL2--GLI3^AHCYL2^ENSG00000158467.16" ; ccdsid "CCDS5812.1" ; exon_id "ENSE00001121588.3" ; exon_number 1 ; gene_id "AHCYL2--GLI3^AHCYL2^ENSG00000158467.16" ; gene_name AHCYL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157677.5" ; havana_transcript "OTTHUMT00000354065.1" ; hgnc_id "HGNC:22204" ; level 2 ; orig_coord_info "chr7,129225077,129225439,+" ; protein_id "ENSP00000315931.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "AHCYL2--GLI3^ENST00000325006.7" ; transcript_name "AHCYL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AHCYL2--GLI3 HAVANA mRNA 1001 25253 . + . FI_gene_label "AHCYL2^ENSG00000158467.16" ; ID "AHCYL2--GLI3^ENST00000325006.7" ; Parent "AHCYL2--GLI3^AHCYL2^ENSG00000158467.16" ; ccdsid "CCDS5812.1" ; exon_id "ENSE00001121588.3" ; exon_number 1 ; gene_id "AHCYL2--GLI3^AHCYL2^ENSG00000158467.16" ; gene_name AHCYL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157677.5" ; havana_transcript "OTTHUMT00000354065.1" ; hgnc_id "HGNC:22204" ; level 2 ; orig_coord_info "chr7,129225077,129225439,+" ; protein_id "ENSP00000315931.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "AHCYL2--GLI3^ENST00000325006.7" ; transcript_name "AHCYL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AHCYL2--GLI3 HAVANA gene 30022 64610 . + . FI_gene_label "GLI3^ENSG00000106571.15" ; ID "AHCYL2--GLI3^GLI3^ENSG00000106571.15" ; ccdsid "CCDS5465.1" ; exon_id "ENSE00001523285.1" ; exon_number 2 ; gene_id "AHCYL2--GLI3^GLI3^ENSG00000106571.15" ; gene_name GLI3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023630.8" ; havana_transcript "OTTHUMT00000250806.4" ; hgnc_id "HGNC:4319" ; level 2 ; orig_coord_info "chr7,42223130,42223253,-" ; protein_id "ENSP00000379258.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AHCYL2--GLI3^ENST00000395925.8" ; transcript_name "GLI3-201" ; transcript_support_level 5 ; transcript_type protein_coding
AHCYL2--GLI3 HAVANA mRNA 30022 64610 . + . FI_gene_label "GLI3^ENSG00000106571.15" ; ID "AHCYL2--GLI3^ENST00000395925.8" ; Parent "AHCYL2--GLI3^GLI3^ENSG00000106571.15" ; ccdsid "CCDS5465.1" ; exon_id "ENSE00001523285.1" ; exon_number 2 ; gene_id "AHCYL2--GLI3^GLI3^ENSG00000106571.15" ; gene_name GLI3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023630.8" ; havana_transcript "OTTHUMT00000250806.4" ; hgnc_id "HGNC:4319" ; level 2 ; orig_coord_info "chr7,42223130,42223253,-" ; protein_id "ENSP00000379258.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AHCYL2--GLI3^ENST00000395925.8" ; transcript_name "GLI3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AHCYL2--LINC01448 HAVANA gene 1001 25253 . + . FI_gene_label "AHCYL2^ENSG00000158467.16" ; ID "AHCYL2--LINC01448^AHCYL2^ENSG00000158467.16" ; ccdsid "CCDS5812.1" ; exon_id "ENSE00001121588.3" ; exon_number 1 ; gene_id "AHCYL2--LINC01448^AHCYL2^ENSG00000158467.16" ; gene_name AHCYL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157677.5" ; havana_transcript "OTTHUMT00000354065.1" ; hgnc_id "HGNC:22204" ; level 2 ; orig_coord_info "chr7,129225077,129225439,+" ; protein_id "ENSP00000315931.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "AHCYL2--LINC01448^ENST00000325006.7" ; transcript_name "AHCYL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AHCYL2--LINC01448 HAVANA mRNA 1001 25253 . + . FI_gene_label "AHCYL2^ENSG00000158467.16" ; ID "AHCYL2--LINC01448^ENST00000325006.7" ; Parent "AHCYL2--LINC01448^AHCYL2^ENSG00000158467.16" ; ccdsid "CCDS5812.1" ; exon_id "ENSE00001121588.3" ; exon_number 1 ; gene_id "AHCYL2--LINC01448^AHCYL2^ENSG00000158467.16" ; gene_name AHCYL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157677.5" ; havana_transcript "OTTHUMT00000354065.1" ; hgnc_id "HGNC:22204" ; level 2 ; orig_coord_info "chr7,129225077,129225439,+" ; protein_id "ENSP00000315931.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "AHCYL2--LINC01448^ENST00000325006.7" ; transcript_name "AHCYL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AHCYL2--PTPRG HAVANA gene 28596 67485 . + . FI_gene_label "PTPRG^ENSG00000144724.20" ; ID "AHCYL2--PTPRG^PTPRG^ENSG00000144724.20" ; exon_id "ENSE00001873446.1" ; exon_number 1 ; gene_id "AHCYL2--PTPRG^PTPRG^ENSG00000144724.20" ; gene_name PTPRG ; gene_type protein_coding ; havana_gene "OTTHUMG00000158660.2" ; havana_transcript "OTTHUMT00000351675.1" ; hgnc_id "HGNC:9671" ; level 2 ; orig_coord_info "chr3,61562288,61562372,+" ; protein_id "ENSP00000295874.10" ; tag basic appris_alternative_2 ; transcript_id "AHCYL2--PTPRG^ENST00000295874.14" ; transcript_name "PTPRG-201" ; transcript_support_level 1 ; transcript_type protein_coding
AHCYL2--PTPRG HAVANA mRNA 28596 67485 . + . FI_gene_label "PTPRG^ENSG00000144724.20" ; ID "AHCYL2--PTPRG^ENST00000295874.14" ; Parent "AHCYL2--PTPRG^PTPRG^ENSG00000144724.20" ; exon_id "ENSE00001873446.1" ; exon_number 1 ; gene_id "AHCYL2--PTPRG^PTPRG^ENSG00000144724.20" ; gene_name PTPRG ; gene_type protein_coding ; havana_gene "OTTHUMG00000158660.2" ; havana_transcript "OTTHUMT00000351675.1" ; hgnc_id "HGNC:9671" ; level 2 ; orig_coord_info "chr3,61562288,61562372,+" ; protein_id "ENSP00000295874.10" ; tag basic appris_alternative_2 ; transcript_id "AHCYL2--PTPRG^ENST00000295874.14" ; transcript_name "PTPRG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AHCYL2--PTPRG HAVANA gene 1001 25253 . + . FI_gene_label "AHCYL2^ENSG00000158467.16" ; ID "AHCYL2--PTPRG^AHCYL2^ENSG00000158467.16" ; ccdsid "CCDS5812.1" ; exon_id "ENSE00001121588.3" ; exon_number 1 ; gene_id "AHCYL2--PTPRG^AHCYL2^ENSG00000158467.16" ; gene_name AHCYL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157677.5" ; havana_transcript "OTTHUMT00000354065.1" ; hgnc_id "HGNC:22204" ; level 2 ; orig_coord_info "chr7,129225077,129225439,+" ; protein_id "ENSP00000315931.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "AHCYL2--PTPRG^ENST00000325006.7" ; transcript_name "AHCYL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AHCYL2--PTPRG HAVANA mRNA 1001 25253 . + . FI_gene_label "AHCYL2^ENSG00000158467.16" ; ID "AHCYL2--PTPRG^ENST00000325006.7" ; Parent "AHCYL2--PTPRG^AHCYL2^ENSG00000158467.16" ; ccdsid "CCDS5812.1" ; exon_id "ENSE00001121588.3" ; exon_number 1 ; gene_id "AHCYL2--PTPRG^AHCYL2^ENSG00000158467.16" ; gene_name AHCYL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157677.5" ; havana_transcript "OTTHUMT00000354065.1" ; hgnc_id "HGNC:22204" ; level 2 ; orig_coord_info "chr7,129225077,129225439,+" ; protein_id "ENSP00000315931.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "AHCYL2--PTPRG^ENST00000325006.7" ; transcript_name "AHCYL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ALK--PTPN3 ENSEMBL gene 39006 72723 . + . FI_gene_label "PTPN3^ENSG00000070159.14" ; ID "ALK--PTPN3^PTPN3^ENSG00000070159.14" ; exon_id "ENSE00003737404.1" ; exon_number 2 ; gene_id "ALK--PTPN3^PTPN3^ENSG00000070159.14" ; gene_name PTPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020475.5" ; hgnc_id "HGNC:9655" ; level 3 ; orig_coord_info "chr9,109463297,109463434,-" ; protein_id "ENSP00000262539.4" ; tag basic ; transcript_id "ALK--PTPN3^ENST00000262539.7" ; transcript_name "PTPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
ALK--PTPN3 ENSEMBL mRNA 39006 72723 . + . FI_gene_label "PTPN3^ENSG00000070159.14" ; ID "ALK--PTPN3^ENST00000262539.7" ; Parent "ALK--PTPN3^PTPN3^ENSG00000070159.14" ; exon_id "ENSE00003737404.1" ; exon_number 2 ; gene_id "ALK--PTPN3^PTPN3^ENSG00000070159.14" ; gene_name PTPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020475.5" ; hgnc_id "HGNC:9655" ; level 3 ; orig_coord_info "chr9,109463297,109463434,-" ; protein_id "ENSP00000262539.4" ; tag basic ; transcript_id "ALK--PTPN3^ENST00000262539.7" ; transcript_name "PTPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ALK--PTPN3 HAVANA gene 1001 36005 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "ALK--PTPN3^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "ALK--PTPN3^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ALK--PTPN3^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
ALK--PTPN3 HAVANA mRNA 1001 36005 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "ALK--PTPN3^ENST00000389048.8" ; Parent "ALK--PTPN3^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "ALK--PTPN3^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ALK--PTPN3^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COX7A2L--MAP4K3 HAVANA gene 8590 15180 . + . FI_gene_label "COX7A2L^ENSG00000115944.15" ; ID "COX7A2L--MAP4K3^COX7A2L^ENSG00000115944.15" ; ccdsid "CCDS1808.1" ; exon_id "ENSE00001478320.3" ; exon_number 1 ; gene_id "COX7A2L--MAP4K3^COX7A2L^ENSG00000115944.15" ; gene_name COX7A2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000128605.9" ; havana_transcript "OTTHUMT00000504364.2" ; hgnc_id "HGNC:2289" ; level 2 ; orig_coord_info "chr2,42361090,42361161,-" ; protein_id "ENSP00000234301.2" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "COX7A2L--MAP4K3^ENST00000234301.3" ; transcript_name "COX7A2L-201" ; transcript_support_level 1 ; transcript_type protein_coding
COX7A2L--MAP4K3 HAVANA mRNA 8590 15180 . + . FI_gene_label "COX7A2L^ENSG00000115944.15" ; ID "COX7A2L--MAP4K3^ENST00000234301.3" ; Parent "COX7A2L--MAP4K3^COX7A2L^ENSG00000115944.15" ; ccdsid "CCDS1808.1" ; exon_id "ENSE00001478320.3" ; exon_number 1 ; gene_id "COX7A2L--MAP4K3^COX7A2L^ENSG00000115944.15" ; gene_name COX7A2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000128605.9" ; havana_transcript "OTTHUMT00000504364.2" ; hgnc_id "HGNC:2289" ; level 2 ; orig_coord_info "chr2,42361090,42361161,-" ; protein_id "ENSP00000234301.2" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "COX7A2L--MAP4K3^ENST00000234301.3" ; transcript_name "COX7A2L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COX7A2L--MAP4K3 HAVANA gene 19521 55625 . + . FI_gene_label "MAP4K3^ENSG00000011566.15" ; ID "COX7A2L--MAP4K3^MAP4K3^ENSG00000011566.15" ; ccdsid "CCDS1803.1" ; exon_id "ENSE00001922471.2" ; exon_number 1 ; gene_id "COX7A2L--MAP4K3^MAP4K3^ENSG00000011566.15" ; gene_name MAP4K3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000102127.5" ; havana_transcript "OTTHUMT00000219966.3" ; hgnc_id "HGNC:6865" ; level 2 ; orig_coord_info "chr2,39436892,39436987,-" ; protein_id "ENSP00000263881.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COX7A2L--MAP4K3^ENST00000263881.8" ; transcript_name "MAP4K3-201" ; transcript_support_level 1 ; transcript_type protein_coding
COX7A2L--MAP4K3 HAVANA mRNA 19521 55625 . + . FI_gene_label "MAP4K3^ENSG00000011566.15" ; ID "COX7A2L--MAP4K3^ENST00000263881.8" ; Parent "COX7A2L--MAP4K3^MAP4K3^ENSG00000011566.15" ; ccdsid "CCDS1803.1" ; exon_id "ENSE00001922471.2" ; exon_number 1 ; gene_id "COX7A2L--MAP4K3^MAP4K3^ENSG00000011566.15" ; gene_name MAP4K3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000102127.5" ; havana_transcript "OTTHUMT00000219966.3" ; hgnc_id "HGNC:6865" ; level 2 ; orig_coord_info "chr2,39436892,39436987,-" ; protein_id "ENSP00000263881.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COX7A2L--MAP4K3^ENST00000263881.8" ; transcript_name "MAP4K3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCBLD2--STXBP5L HAVANA gene 29835 68563 . + . FI_gene_label "STXBP5L^ENSG00000145087.13" ; ID "DCBLD2--STXBP5L^STXBP5L^ENSG00000145087.13" ; ccdsid "CCDS43137.1" ; exon_id "ENSE00001078687.1" ; exon_number 2 ; gene_id "DCBLD2--STXBP5L^STXBP5L^ENSG00000145087.13" ; gene_name STXBP5L ; gene_type protein_coding ; havana_gene "OTTHUMG00000159426.4" ; havana_transcript "OTTHUMT00000355256.3" ; hgnc_id "HGNC:30757" ; level 2 ; orig_coord_info "chr3,120909579,120909767,+" ; protein_id "ENSP00000273666.6" ; tag basic appris_principal_4 CCDS ; transcript_id "DCBLD2--STXBP5L^ENST00000273666.10" ; transcript_name "STXBP5L-201" ; transcript_support_level 1 ; transcript_type protein_coding
DCBLD2--STXBP5L HAVANA mRNA 29835 68563 . + . FI_gene_label "STXBP5L^ENSG00000145087.13" ; ID "DCBLD2--STXBP5L^ENST00000273666.10" ; Parent "DCBLD2--STXBP5L^STXBP5L^ENSG00000145087.13" ; ccdsid "CCDS43137.1" ; exon_id "ENSE00001078687.1" ; exon_number 2 ; gene_id "DCBLD2--STXBP5L^STXBP5L^ENSG00000145087.13" ; gene_name STXBP5L ; gene_type protein_coding ; havana_gene "OTTHUMG00000159426.4" ; havana_transcript "OTTHUMT00000355256.3" ; hgnc_id "HGNC:30757" ; level 2 ; orig_coord_info "chr3,120909579,120909767,+" ; protein_id "ENSP00000273666.6" ; tag basic appris_principal_4 CCDS ; transcript_id "DCBLD2--STXBP5L^ENST00000273666.10" ; transcript_name "STXBP5L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCBLD2--STXBP5L HAVANA gene 1001 26834 . + . FI_gene_label "DCBLD2^ENSG00000057019.16" ; ID "DCBLD2--STXBP5L^DCBLD2^ENSG00000057019.16" ; ccdsid "CCDS46878.1" ; exon_id "ENSE00001428922.2" ; exon_number 1 ; gene_id "DCBLD2--STXBP5L^DCBLD2^ENSG00000057019.16" ; gene_name DCBLD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151985.4" ; havana_transcript "OTTHUMT00000324675.3" ; hgnc_id "HGNC:24627" ; level 2 ; orig_coord_info "chr3,98901122,98901326,-" ; protein_id "ENSP00000321573.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DCBLD2--STXBP5L^ENST00000326840.11" ; transcript_name "DCBLD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DCBLD2--STXBP5L HAVANA mRNA 1001 26834 . + . FI_gene_label "DCBLD2^ENSG00000057019.16" ; ID "DCBLD2--STXBP5L^ENST00000326840.11" ; Parent "DCBLD2--STXBP5L^DCBLD2^ENSG00000057019.16" ; ccdsid "CCDS46878.1" ; exon_id "ENSE00001428922.2" ; exon_number 1 ; gene_id "DCBLD2--STXBP5L^DCBLD2^ENSG00000057019.16" ; gene_name DCBLD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151985.4" ; havana_transcript "OTTHUMT00000324675.3" ; hgnc_id "HGNC:24627" ; level 2 ; orig_coord_info "chr3,98901122,98901326,-" ; protein_id "ENSP00000321573.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DCBLD2--STXBP5L^ENST00000326840.11" ; transcript_name "DCBLD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DELEC1--SENP7 HAVANA gene 32057 59957 . + . FI_gene_label "SENP7^ENSG00000138468.16" ; ID "DELEC1--SENP7^SENP7^ENSG00000138468.16" ; ccdsid "CCDS63706.1" ; exon_id "ENSE00001847751.1" ; exon_number 1 ; gene_id "DELEC1--SENP7^SENP7^ENSG00000138468.16" ; gene_name SENP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149927.4" ; havana_transcript "OTTHUMT00000313960.1" ; hgnc_id "HGNC:30402" ; level 2 ; orig_coord_info "chr3,101513091,101513130,-" ; protein_id "ENSP00000313624.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "DELEC1--SENP7^ENST00000314261.11" ; transcript_name "SENP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
DELEC1--SENP7 HAVANA mRNA 32057 59957 . + . FI_gene_label "SENP7^ENSG00000138468.16" ; ID "DELEC1--SENP7^ENST00000314261.11" ; Parent "DELEC1--SENP7^SENP7^ENSG00000138468.16" ; ccdsid "CCDS63706.1" ; exon_id "ENSE00001847751.1" ; exon_number 1 ; gene_id "DELEC1--SENP7^SENP7^ENSG00000138468.16" ; gene_name SENP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149927.4" ; havana_transcript "OTTHUMT00000313960.1" ; hgnc_id "HGNC:30402" ; level 2 ; orig_coord_info "chr3,101513091,101513130,-" ; protein_id "ENSP00000313624.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "DELEC1--SENP7^ENST00000314261.11" ; transcript_name "SENP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EML4--ALK HAVANA gene 1001 31063 . + . FI_gene_label "EML4^ENSG00000143924.19" ; ID "EML4--ALK^EML4^ENSG00000143924.19" ; ccdsid "CCDS1807.1" ; exon_id "ENSE00001548738.1" ; exon_number 1 ; gene_id "EML4--ALK^EML4^ENSG00000143924.19" ; gene_name EML4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128603.7" ; havana_transcript "OTTHUMT00000250463.4" ; hgnc_id "HGNC:1316" ; level 2 ; orig_coord_info "chr2,42169612,42169636,+" ; protein_id "ENSP00000320663.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "EML4--ALK^ENST00000318522.10" ; transcript_name "EML4-201" ; transcript_support_level 1 ; transcript_type protein_coding
EML4--ALK HAVANA mRNA 1001 31063 . + . FI_gene_label "EML4^ENSG00000143924.19" ; ID "EML4--ALK^ENST00000318522.10" ; Parent "EML4--ALK^EML4^ENSG00000143924.19" ; ccdsid "CCDS1807.1" ; exon_id "ENSE00001548738.1" ; exon_number 1 ; gene_id "EML4--ALK^EML4^ENSG00000143924.19" ; gene_name EML4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128603.7" ; havana_transcript "OTTHUMT00000250463.4" ; hgnc_id "HGNC:1316" ; level 2 ; orig_coord_info "chr2,42169612,42169636,+" ; protein_id "ENSP00000320663.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "EML4--ALK^ENST00000318522.10" ; transcript_name "EML4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EML4--ALK HAVANA gene 34064 69068 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "EML4--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "EML4--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EML4--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
EML4--ALK HAVANA mRNA 34064 69068 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "EML4--ALK^ENST00000389048.8" ; Parent "EML4--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "EML4--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EML4--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERP44--AL162414.1 HAVANA gene 1001 16738 . + . FI_gene_label "ERP44^ENSG00000023318.8" ; ID "ERP44--AL162414.1^ERP44^ENSG00000023318.8" ; ccdsid "CCDS35082.1" ; exon_id "ENSE00001284515.8" ; exon_number 1 ; gene_id "ERP44--AL162414.1^ERP44^ENSG00000023318.8" ; gene_name ERP44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020363.2" ; havana_transcript "OTTHUMT00000053402.2" ; hgnc_id "HGNC:18311" ; level 2 ; orig_coord_info "chr9,100098784,100098840,-" ; protein_id "ENSP00000262455.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERP44--AL162414.1^ENST00000262455.7" ; transcript_name "ERP44-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERP44--AL162414.1 HAVANA mRNA 1001 16738 . + . FI_gene_label "ERP44^ENSG00000023318.8" ; ID "ERP44--AL162414.1^ENST00000262455.7" ; Parent "ERP44--AL162414.1^ERP44^ENSG00000023318.8" ; ccdsid "CCDS35082.1" ; exon_id "ENSE00001284515.8" ; exon_number 1 ; gene_id "ERP44--AL162414.1^ERP44^ENSG00000023318.8" ; gene_name ERP44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020363.2" ; havana_transcript "OTTHUMT00000053402.2" ; hgnc_id "HGNC:18311" ; level 2 ; orig_coord_info "chr9,100098784,100098840,-" ; protein_id "ENSP00000262455.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERP44--AL162414.1^ENST00000262455.7" ; transcript_name "ERP44-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GPT2--ZNF646 HAVANA gene 20724 30358 . + . FI_gene_label "ZNF646^ENSG00000167395.10" ; ID "GPT2--ZNF646^ZNF646^ENSG00000167395.10" ; ccdsid "CCDS10702.1" ; exon_id "ENSE00001112638.4" ; exon_number 2 ; gene_id "GPT2--ZNF646^ZNF646^ENSG00000167395.10" ; gene_name ZNF646 ; gene_type protein_coding ; havana_gene "OTTHUMG00000047355.3" ; havana_transcript "OTTHUMT00000108508.2" ; hgnc_id "HGNC:29004" ; level 2 ; orig_coord_info "chr16,31076325,31081701,+" ; protein_id "ENSP00000300850.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GPT2--ZNF646^ENST00000300850.5" ; transcript_name "ZNF646-201" ; transcript_support_level 1 ; transcript_type protein_coding
GPT2--ZNF646 HAVANA mRNA 20724 30358 . + . FI_gene_label "ZNF646^ENSG00000167395.10" ; ID "GPT2--ZNF646^ENST00000300850.5" ; Parent "GPT2--ZNF646^ZNF646^ENSG00000167395.10" ; ccdsid "CCDS10702.1" ; exon_id "ENSE00001112638.4" ; exon_number 2 ; gene_id "GPT2--ZNF646^ZNF646^ENSG00000167395.10" ; gene_name ZNF646 ; gene_type protein_coding ; havana_gene "OTTHUMG00000047355.3" ; havana_transcript "OTTHUMT00000108508.2" ; hgnc_id "HGNC:29004" ; level 2 ; orig_coord_info "chr16,31076325,31081701,+" ; protein_id "ENSP00000300850.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GPT2--ZNF646^ENST00000300850.5" ; transcript_name "ZNF646-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GPT2--ZNF646 HAVANA gene 1001 17723 . + . FI_gene_label "GPT2^ENSG00000166123.14" ; ID "GPT2--ZNF646^GPT2^ENSG00000166123.14" ; ccdsid "CCDS10725.1" ; exon_id "ENSE00001165297.3" ; exon_number 2 ; gene_id "GPT2--ZNF646^GPT2^ENSG00000166123.14" ; gene_name GPT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132541.5" ; havana_transcript "OTTHUMT00000255741.3" ; hgnc_id "HGNC:18062" ; level 2 ; orig_coord_info "chr16,46884716,46884958,+" ; protein_id "ENSP00000345282.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GPT2--ZNF646^ENST00000340124.9" ; transcript_name "GPT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GPT2--ZNF646 HAVANA mRNA 1001 17723 . + . FI_gene_label "GPT2^ENSG00000166123.14" ; ID "GPT2--ZNF646^ENST00000340124.9" ; Parent "GPT2--ZNF646^GPT2^ENSG00000166123.14" ; ccdsid "CCDS10725.1" ; exon_id "ENSE00001165297.3" ; exon_number 2 ; gene_id "GPT2--ZNF646^GPT2^ENSG00000166123.14" ; gene_name GPT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132541.5" ; havana_transcript "OTTHUMT00000255741.3" ; hgnc_id "HGNC:18062" ; level 2 ; orig_coord_info "chr16,46884716,46884958,+" ; protein_id "ENSP00000345282.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GPT2--ZNF646^ENST00000340124.9" ; transcript_name "GPT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIP1--CFTR HAVANA gene 45619 81400 . + . FI_gene_label "CFTR^ENSG00000001626.16" ; ID "HIP1--CFTR^CFTR^ENSG00000001626.16" ; ccdsid "CCDS5773.1" ; exon_id "ENSE00001343851.2" ; exon_number 1 ; gene_id "HIP1--CFTR^CFTR^ENSG00000001626.16" ; gene_name CFTR ; gene_type protein_coding ; havana_gene "OTTHUMG00000023076.18" ; havana_transcript "OTTHUMT00000059397.6" ; hgnc_id "HGNC:1884" ; level 2 ; orig_coord_info "chr7,117480095,117480147,+" ; protein_id "ENSP00000003084.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HIP1--CFTR^ENST00000003084.11" ; transcript_name "CFTR-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIP1--CFTR HAVANA mRNA 45619 81400 . + . FI_gene_label "CFTR^ENSG00000001626.16" ; ID "HIP1--CFTR^ENST00000003084.11" ; Parent "HIP1--CFTR^CFTR^ENSG00000001626.16" ; ccdsid "CCDS5773.1" ; exon_id "ENSE00001343851.2" ; exon_number 1 ; gene_id "HIP1--CFTR^CFTR^ENSG00000001626.16" ; gene_name CFTR ; gene_type protein_coding ; havana_gene "OTTHUMG00000023076.18" ; havana_transcript "OTTHUMT00000059397.6" ; hgnc_id "HGNC:1884" ; level 2 ; orig_coord_info "chr7,117480095,117480147,+" ; protein_id "ENSP00000003084.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HIP1--CFTR^ENST00000003084.11" ; transcript_name "CFTR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIP1--CFTR HAVANA gene 1022 36299 . + . FI_gene_label "HIP1^ENSG00000127946.17" ; ID "HIP1--CFTR^HIP1^ENSG00000127946.17" ; ccdsid "CCDS34669.1" ; exon_id "ENSE00001703612.1" ; exon_number 1 ; gene_id "HIP1--CFTR^HIP1^ENSG00000127946.17" ; gene_name HIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156050.6" ; havana_transcript "OTTHUMT00000342863.4" ; hgnc_id "HGNC:4913" ; level 2 ; orig_coord_info "chr7,75738801,75738920,-" ; protein_id "ENSP00000336747.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HIP1--CFTR^ENST00000336926.11" ; transcript_name "HIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIP1--CFTR HAVANA mRNA 1022 36299 . + . FI_gene_label "HIP1^ENSG00000127946.17" ; ID "HIP1--CFTR^ENST00000336926.11" ; Parent "HIP1--CFTR^HIP1^ENSG00000127946.17" ; ccdsid "CCDS34669.1" ; exon_id "ENSE00001703612.1" ; exon_number 1 ; gene_id "HIP1--CFTR^HIP1^ENSG00000127946.17" ; gene_name HIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156050.6" ; havana_transcript "OTTHUMT00000342863.4" ; hgnc_id "HGNC:4913" ; level 2 ; orig_coord_info "chr7,75738801,75738920,-" ; protein_id "ENSP00000336747.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HIP1--CFTR^ENST00000336926.11" ; transcript_name "HIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KATNAL1--ZC3H13 HAVANA gene 21584 49593 . + . FI_gene_label "ZC3H13^ENSG00000123200.17" ; ID "KATNAL1--ZC3H13^ZC3H13^ENSG00000123200.17" ; ccdsid "CCDS81766.1" ; exon_id "ENSE00001479353.1" ; exon_number 2 ; gene_id "KATNAL1--ZC3H13^ZC3H13^ENSG00000123200.17" ; gene_name ZC3H13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016863.5" ; havana_transcript "OTTHUMT00000044789.1" ; hgnc_id "HGNC:20368" ; level 2 ; orig_coord_info "chr13,46045391,46045507,-" ; protein_id "ENSP00000242848.4" ; tag basic appris_principal_3 CCDS ; transcript_id "KATNAL1--ZC3H13^ENST00000242848.8" ; transcript_name "ZC3H13-201" ; transcript_support_level 5 ; transcript_type protein_coding
KATNAL1--ZC3H13 HAVANA mRNA 21584 49593 . + . FI_gene_label "ZC3H13^ENSG00000123200.17" ; ID "KATNAL1--ZC3H13^ENST00000242848.8" ; Parent "KATNAL1--ZC3H13^ZC3H13^ENSG00000123200.17" ; ccdsid "CCDS81766.1" ; exon_id "ENSE00001479353.1" ; exon_number 2 ; gene_id "KATNAL1--ZC3H13^ZC3H13^ENSG00000123200.17" ; gene_name ZC3H13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016863.5" ; havana_transcript "OTTHUMT00000044789.1" ; hgnc_id "HGNC:20368" ; level 2 ; orig_coord_info "chr13,46045391,46045507,-" ; protein_id "ENSP00000242848.4" ; tag basic appris_principal_3 CCDS ; transcript_id "KATNAL1--ZC3H13^ENST00000242848.8" ; transcript_name "ZC3H13-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
KATNAL1--ZC3H13 HAVANA gene 1001 18570 . + . FI_gene_label "KATNAL1^ENSG00000102781.14" ; ID "KATNAL1--ZC3H13^KATNAL1^ENSG00000102781.14" ; ccdsid "CCDS31956.1" ; exon_id "ENSE00000679860.3" ; exon_number 2 ; gene_id "KATNAL1--ZC3H13^KATNAL1^ENSG00000102781.14" ; gene_name KATNAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016665.5" ; havana_transcript "OTTHUMT00000044346.3" ; hgnc_id "HGNC:28361" ; level 2 ; orig_coord_info "chr13,30283616,30283777,-" ; protein_id "ENSP00000369989.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "KATNAL1--ZC3H13^ENST00000380615.8" ; transcript_name "KATNAL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KATNAL1--ZC3H13 HAVANA mRNA 1001 18570 . + . FI_gene_label "KATNAL1^ENSG00000102781.14" ; ID "KATNAL1--ZC3H13^ENST00000380615.8" ; Parent "KATNAL1--ZC3H13^KATNAL1^ENSG00000102781.14" ; ccdsid "CCDS31956.1" ; exon_id "ENSE00000679860.3" ; exon_number 2 ; gene_id "KATNAL1--ZC3H13^KATNAL1^ENSG00000102781.14" ; gene_name KATNAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016665.5" ; havana_transcript "OTTHUMT00000044346.3" ; hgnc_id "HGNC:28361" ; level 2 ; orig_coord_info "chr13,30283616,30283777,-" ; protein_id "ENSP00000369989.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "KATNAL1--ZC3H13^ENST00000380615.8" ; transcript_name "KATNAL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LPAR1--STXBP5L HAVANA gene 15241 53969 . + . FI_gene_label "STXBP5L^ENSG00000145087.13" ; ID "LPAR1--STXBP5L^STXBP5L^ENSG00000145087.13" ; ccdsid "CCDS43137.1" ; exon_id "ENSE00001078687.1" ; exon_number 2 ; gene_id "LPAR1--STXBP5L^STXBP5L^ENSG00000145087.13" ; gene_name STXBP5L ; gene_type protein_coding ; havana_gene "OTTHUMG00000159426.4" ; havana_transcript "OTTHUMT00000355256.3" ; hgnc_id "HGNC:30757" ; level 2 ; orig_coord_info "chr3,120909579,120909767,+" ; protein_id "ENSP00000273666.6" ; tag basic appris_principal_4 CCDS ; transcript_id "LPAR1--STXBP5L^ENST00000273666.10" ; transcript_name "STXBP5L-201" ; transcript_support_level 1 ; transcript_type protein_coding
LPAR1--STXBP5L HAVANA mRNA 15241 53969 . + . FI_gene_label "STXBP5L^ENSG00000145087.13" ; ID "LPAR1--STXBP5L^ENST00000273666.10" ; Parent "LPAR1--STXBP5L^STXBP5L^ENSG00000145087.13" ; ccdsid "CCDS43137.1" ; exon_id "ENSE00001078687.1" ; exon_number 2 ; gene_id "LPAR1--STXBP5L^STXBP5L^ENSG00000145087.13" ; gene_name STXBP5L ; gene_type protein_coding ; havana_gene "OTTHUMG00000159426.4" ; havana_transcript "OTTHUMT00000355256.3" ; hgnc_id "HGNC:30757" ; level 2 ; orig_coord_info "chr3,120909579,120909767,+" ; protein_id "ENSP00000273666.6" ; tag basic appris_principal_4 CCDS ; transcript_id "LPAR1--STXBP5L^ENST00000273666.10" ; transcript_name "STXBP5L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LPAR1--STXBP5L HAVANA gene 1374 11326 . + . FI_gene_label "LPAR1^ENSG00000198121.13" ; ID "LPAR1--STXBP5L^LPAR1^ENSG00000198121.13" ; ccdsid "CCDS6777.1" ; exon_id "ENSE00002724435.1" ; exon_number 2 ; gene_id "LPAR1--STXBP5L^LPAR1^ENSG00000198121.13" ; gene_name LPAR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020486.3" ; havana_transcript "OTTHUMT00000053633.1" ; hgnc_id "HGNC:3166" ; level 2 ; orig_coord_info "chr9,110972073,110972117,-" ; protein_id "ENSP00000351755.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "LPAR1--STXBP5L^ENST00000358883.8" ; transcript_name "LPAR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
LPAR1--STXBP5L HAVANA mRNA 1374 11326 . + . FI_gene_label "LPAR1^ENSG00000198121.13" ; ID "LPAR1--STXBP5L^ENST00000358883.8" ; Parent "LPAR1--STXBP5L^LPAR1^ENSG00000198121.13" ; ccdsid "CCDS6777.1" ; exon_id "ENSE00002724435.1" ; exon_number 2 ; gene_id "LPAR1--STXBP5L^LPAR1^ENSG00000198121.13" ; gene_name LPAR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020486.3" ; havana_transcript "OTTHUMT00000053633.1" ; hgnc_id "HGNC:3166" ; level 2 ; orig_coord_info "chr9,110972073,110972117,-" ; protein_id "ENSP00000351755.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "LPAR1--STXBP5L^ENST00000358883.8" ; transcript_name "LPAR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NCBP1--AL161629.2 HAVANA gene 19092 21437 . + . FI_gene_label "NCBP1^ENSG00000136937.13" ; ID "NCBP1--AL161629.2^NCBP1^ENSG00000136937.13" ; exon_id "ENSE00001728703.1" ; exon_number 1 ; gene_id "NCBP1--AL161629.2^NCBP1^ENSG00000136937.13" ; gene_name NCBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020332.5" ; havana_transcript "OTTHUMT00000053340.2" ; hgnc_id "HGNC:7658" ; level 2 ; orig_coord_info "chr9,97666763,97666877,+" ; protein_id "ENSP00000364272.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NCBP1--AL161629.2^ENST00000375130.2" ; transcript_name "NCBP1-201" ; transcript_support_level 3 ; transcript_type protein_coding
NCBP1--AL161629.2 HAVANA mRNA 19092 21437 . + . FI_gene_label "NCBP1^ENSG00000136937.13" ; ID "NCBP1--AL161629.2^ENST00000375130.2" ; Parent "NCBP1--AL161629.2^NCBP1^ENSG00000136937.13" ; exon_id "ENSE00001728703.1" ; exon_number 1 ; gene_id "NCBP1--AL161629.2^NCBP1^ENSG00000136937.13" ; gene_name NCBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020332.5" ; havana_transcript "OTTHUMT00000053340.2" ; hgnc_id "HGNC:7658" ; level 2 ; orig_coord_info "chr9,97666763,97666877,+" ; protein_id "ENSP00000364272.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NCBP1--AL161629.2^ENST00000375130.2" ; transcript_name "NCBP1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
NCBP1--CSGALNACT1 HAVANA gene 31713 52237 . + . FI_gene_label "CSGALNACT1^ENSG00000147408.14" ; ID "NCBP1--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; ccdsid "CCDS6010.1" ; exon_id "ENSE00001391788.1" ; exon_number 4 ; gene_id "NCBP1--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; gene_name CSGALNACT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130827.5" ; havana_transcript "OTTHUMT00000253381.1" ; hgnc_id "HGNC:24290" ; level 2 ; orig_coord_info "chr8,19505201,19505834,-" ; protein_id "ENSP00000330805.6" ; tag basic appris_principal_1 CCDS ; transcript_id "NCBP1--CSGALNACT1^ENST00000332246.10" ; transcript_name "CSGALNACT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCBP1--CSGALNACT1 HAVANA mRNA 31713 52237 . + . FI_gene_label "CSGALNACT1^ENSG00000147408.14" ; ID "NCBP1--CSGALNACT1^ENST00000332246.10" ; Parent "NCBP1--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; ccdsid "CCDS6010.1" ; exon_id "ENSE00001391788.1" ; exon_number 4 ; gene_id "NCBP1--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; gene_name CSGALNACT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130827.5" ; havana_transcript "OTTHUMT00000253381.1" ; hgnc_id "HGNC:24290" ; level 2 ; orig_coord_info "chr8,19505201,19505834,-" ; protein_id "ENSP00000330805.6" ; tag basic appris_principal_1 CCDS ; transcript_id "NCBP1--CSGALNACT1^ENST00000332246.10" ; transcript_name "CSGALNACT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCBP1--CSGALNACT1 HAVANA gene 19092 21437 . + . FI_gene_label "NCBP1^ENSG00000136937.13" ; ID "NCBP1--CSGALNACT1^NCBP1^ENSG00000136937.13" ; exon_id "ENSE00001728703.1" ; exon_number 1 ; gene_id "NCBP1--CSGALNACT1^NCBP1^ENSG00000136937.13" ; gene_name NCBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020332.5" ; havana_transcript "OTTHUMT00000053340.2" ; hgnc_id "HGNC:7658" ; level 2 ; orig_coord_info "chr9,97666763,97666877,+" ; protein_id "ENSP00000364272.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NCBP1--CSGALNACT1^ENST00000375130.2" ; transcript_name "NCBP1-201" ; transcript_support_level 3 ; transcript_type protein_coding
NCBP1--CSGALNACT1 HAVANA mRNA 19092 21437 . + . FI_gene_label "NCBP1^ENSG00000136937.13" ; ID "NCBP1--CSGALNACT1^ENST00000375130.2" ; Parent "NCBP1--CSGALNACT1^NCBP1^ENSG00000136937.13" ; exon_id "ENSE00001728703.1" ; exon_number 1 ; gene_id "NCBP1--CSGALNACT1^NCBP1^ENSG00000136937.13" ; gene_name NCBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020332.5" ; havana_transcript "OTTHUMT00000053340.2" ; hgnc_id "HGNC:7658" ; level 2 ; orig_coord_info "chr9,97666763,97666877,+" ; protein_id "ENSP00000364272.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NCBP1--CSGALNACT1^ENST00000375130.2" ; transcript_name "NCBP1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
NCBP1--IL6RP1 HAVANA gene 19092 21437 . + . FI_gene_label "NCBP1^ENSG00000136937.13" ; ID "NCBP1--IL6RP1^NCBP1^ENSG00000136937.13" ; exon_id "ENSE00001728703.1" ; exon_number 1 ; gene_id "NCBP1--IL6RP1^NCBP1^ENSG00000136937.13" ; gene_name NCBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020332.5" ; havana_transcript "OTTHUMT00000053340.2" ; hgnc_id "HGNC:7658" ; level 2 ; orig_coord_info "chr9,97666763,97666877,+" ; protein_id "ENSP00000364272.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NCBP1--IL6RP1^ENST00000375130.2" ; transcript_name "NCBP1-201" ; transcript_support_level 3 ; transcript_type protein_coding
NCBP1--IL6RP1 HAVANA mRNA 19092 21437 . + . FI_gene_label "NCBP1^ENSG00000136937.13" ; ID "NCBP1--IL6RP1^ENST00000375130.2" ; Parent "NCBP1--IL6RP1^NCBP1^ENSG00000136937.13" ; exon_id "ENSE00001728703.1" ; exon_number 1 ; gene_id "NCBP1--IL6RP1^NCBP1^ENSG00000136937.13" ; gene_name NCBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020332.5" ; havana_transcript "OTTHUMT00000053340.2" ; hgnc_id "HGNC:7658" ; level 2 ; orig_coord_info "chr9,97666763,97666877,+" ; protein_id "ENSP00000364272.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NCBP1--IL6RP1^ENST00000375130.2" ; transcript_name "NCBP1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
NPL--USP20 ENSEMBL gene 4553 20533 . + . FI_gene_label "NPL^ENSG00000135838.13" ; ID "NPL--USP20^NPL^ENSG00000135838.13" ; ccdsid "CCDS1350.1" ; exon_id "ENSE00002235398.1" ; exon_number 1 ; gene_id "NPL--USP20^NPL^ENSG00000135838.13" ; gene_name NPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000035321.3" ; hgnc_id "HGNC:16781" ; level 3 ; orig_coord_info "chr1,182794372,182794439,+" ; protein_id "ENSP00000258317.2" ; tag basic appris_principal_1 CCDS ; transcript_id "NPL--USP20^ENST00000258317.6" ; transcript_name "NPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPL--USP20 ENSEMBL mRNA 4553 20533 . + . FI_gene_label "NPL^ENSG00000135838.13" ; ID "NPL--USP20^ENST00000258317.6" ; Parent "NPL--USP20^NPL^ENSG00000135838.13" ; ccdsid "CCDS1350.1" ; exon_id "ENSE00002235398.1" ; exon_number 1 ; gene_id "NPL--USP20^NPL^ENSG00000135838.13" ; gene_name NPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000035321.3" ; hgnc_id "HGNC:16781" ; level 3 ; orig_coord_info "chr1,182794372,182794439,+" ; protein_id "ENSP00000258317.2" ; tag basic appris_principal_1 CCDS ; transcript_id "NPL--USP20^ENST00000258317.6" ; transcript_name "NPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPL--USP20 HAVANA gene 24294 44918 . + . FI_gene_label "USP20^ENSG00000136878.14" ; ID "NPL--USP20^USP20^ENSG00000136878.14" ; ccdsid "CCDS43892.1" ; exon_id "ENSE00003593438.1" ; exon_number 3 ; gene_id "NPL--USP20^USP20^ENSG00000136878.14" ; gene_name USP20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020793.4" ; havana_transcript "OTTHUMT00000054604.3" ; hgnc_id "HGNC:12619" ; level 2 ; orig_coord_info "chr9,129852556,129852636,+" ; protein_id "ENSP00000313811.4" ; tag alternative_3_UTR basic appris_principal_1 CCDS ; transcript_id "NPL--USP20^ENST00000315480.9" ; transcript_name "USP20-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPL--USP20 HAVANA mRNA 24294 44918 . + . FI_gene_label "USP20^ENSG00000136878.14" ; ID "NPL--USP20^ENST00000315480.9" ; Parent "NPL--USP20^USP20^ENSG00000136878.14" ; ccdsid "CCDS43892.1" ; exon_id "ENSE00003593438.1" ; exon_number 3 ; gene_id "NPL--USP20^USP20^ENSG00000136878.14" ; gene_name USP20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020793.4" ; havana_transcript "OTTHUMT00000054604.3" ; hgnc_id "HGNC:12619" ; level 2 ; orig_coord_info "chr9,129852556,129852636,+" ; protein_id "ENSP00000313811.4" ; tag alternative_3_UTR basic appris_principal_1 CCDS ; transcript_id "NPL--USP20^ENST00000315480.9" ; transcript_name "USP20-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPM1--MT-RNR2 HAVANA gene 1734 14723 . + . FI_gene_label "NPM1^ENSG00000181163.14" ; ID "NPM1--MT-RNR2^NPM1^ENSG00000181163.14" ; ccdsid "CCDS4376.1" ; exon_id "ENSE00003906984.1" ; exon_number 1 ; gene_id "NPM1--MT-RNR2^NPM1^ENSG00000181163.14" ; gene_name NPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130465.4" ; havana_transcript "OTTHUMT00000252858.2" ; hgnc_id "HGNC:7910" ; level 2 ; orig_coord_info "chr5,171387949,171388006,+" ; protein_id "ENSP00000296930.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPM1--MT-RNR2^ENST00000296930.10" ; transcript_name "NPM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPM1--MT-RNR2 HAVANA mRNA 1734 14723 . + . FI_gene_label "NPM1^ENSG00000181163.14" ; ID "NPM1--MT-RNR2^ENST00000296930.10" ; Parent "NPM1--MT-RNR2^NPM1^ENSG00000181163.14" ; ccdsid "CCDS4376.1" ; exon_id "ENSE00003906984.1" ; exon_number 1 ; gene_id "NPM1--MT-RNR2^NPM1^ENSG00000181163.14" ; gene_name NPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130465.4" ; havana_transcript "OTTHUMT00000252858.2" ; hgnc_id "HGNC:7910" ; level 2 ; orig_coord_info "chr5,171387949,171388006,+" ; protein_id "ENSP00000296930.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPM1--MT-RNR2^ENST00000296930.10" ; transcript_name "NPM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
POM121C--CPED1 HAVANA gene 23102 56889 . + . FI_gene_label "CPED1^ENSG00000106034.18" ; ID "POM121C--CPED1^CPED1^ENSG00000106034.18" ; ccdsid "CCDS34739.1" ; exon_id "ENSE00001631458.1" ; exon_number 2 ; gene_id "POM121C--CPED1^CPED1^ENSG00000106034.18" ; gene_name CPED1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156982.6" ; havana_transcript "OTTHUMT00000346959.2" ; hgnc_id "HGNC:26159" ; level 2 ; orig_coord_info "chr7,120989622,120989870,+" ; protein_id "ENSP00000309772.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "POM121C--CPED1^ENST00000310396.10" ; transcript_name "CPED1-201" ; transcript_support_level 1 ; transcript_type protein_coding
POM121C--CPED1 HAVANA mRNA 23102 56889 . + . FI_gene_label "CPED1^ENSG00000106034.18" ; ID "POM121C--CPED1^ENST00000310396.10" ; Parent "POM121C--CPED1^CPED1^ENSG00000106034.18" ; ccdsid "CCDS34739.1" ; exon_id "ENSE00001631458.1" ; exon_number 2 ; gene_id "POM121C--CPED1^CPED1^ENSG00000106034.18" ; gene_name CPED1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156982.6" ; havana_transcript "OTTHUMT00000346959.2" ; hgnc_id "HGNC:26159" ; level 2 ; orig_coord_info "chr7,120989622,120989870,+" ; protein_id "ENSP00000309772.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "POM121C--CPED1^ENST00000310396.10" ; transcript_name "CPED1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
POM121C--CPED1 HAVANA gene 2437 6718 . + . FI_gene_label "POM121C^ENSG00000272391.6" ; ID "POM121C--CPED1^POM121C^ENSG00000272391.6" ; exon_id "ENSE00003579876.1" ; exon_number 4 ; gene_id "POM121C--CPED1^POM121C^ENSG00000272391.6" ; gene_name POM121C ; gene_type protein_coding ; havana_gene "OTTHUMG00000156238.11" ; havana_transcript "OTTHUMT00000343918.2" ; hgnc_id "HGNC:34005" ; level 2 ; orig_coord_info "chr7,75441432,75441496,-" ; protein_id "ENSP00000381415.2" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "POM121C--CPED1^ENST00000398379.2" ; transcript_name "POM121C-201" ; transcript_support_level 2 ; transcript_type protein_coding
POM121C--CPED1 HAVANA mRNA 2437 6718 . + . FI_gene_label "POM121C^ENSG00000272391.6" ; ID "POM121C--CPED1^ENST00000398379.2" ; Parent "POM121C--CPED1^POM121C^ENSG00000272391.6" ; exon_id "ENSE00003579876.1" ; exon_number 4 ; gene_id "POM121C--CPED1^POM121C^ENSG00000272391.6" ; gene_name POM121C ; gene_type protein_coding ; havana_gene "OTTHUMG00000156238.11" ; havana_transcript "OTTHUMT00000343918.2" ; hgnc_id "HGNC:34005" ; level 2 ; orig_coord_info "chr7,75441432,75441496,-" ; protein_id "ENSP00000381415.2" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "POM121C--CPED1^ENST00000398379.2" ; transcript_name "POM121C-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PTCH1--FMC1 HAVANA gene 43308 45925 . + . FI_gene_label "FMC1^ENSG00000164898.13" ; ID "PTCH1--FMC1^FMC1^ENSG00000164898.13" ; ccdsid "CCDS5853.1" ; exon_id "ENSE00001636858.3" ; exon_number 1 ; gene_id "PTCH1--FMC1^FMC1^ENSG00000164898.13" ; gene_name FMC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151719.2" ; havana_transcript "OTTHUMT00000323626.2" ; hgnc_id "HGNC:26946" ; level 2 ; orig_coord_info "chr7,139341385,139341522,+" ; protein_id "ENSP00000297534.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTCH1--FMC1^ENST00000297534.7" ; transcript_name "FMC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTCH1--FMC1 HAVANA mRNA 43308 45925 . + . FI_gene_label "FMC1^ENSG00000164898.13" ; ID "PTCH1--FMC1^ENST00000297534.7" ; Parent "PTCH1--FMC1^FMC1^ENSG00000164898.13" ; ccdsid "CCDS5853.1" ; exon_id "ENSE00001636858.3" ; exon_number 1 ; gene_id "PTCH1--FMC1^FMC1^ENSG00000164898.13" ; gene_name FMC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151719.2" ; havana_transcript "OTTHUMT00000323626.2" ; hgnc_id "HGNC:26946" ; level 2 ; orig_coord_info "chr7,139341385,139341522,+" ; protein_id "ENSP00000297534.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTCH1--FMC1^ENST00000297534.7" ; transcript_name "FMC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTCH1--FMC1 HAVANA gene 2590 38427 . + . FI_gene_label "PTCH1^ENSG00000185920.16" ; ID "PTCH1--FMC1^PTCH1^ENSG00000185920.16" ; ccdsid "CCDS6714.1" ; exon_id "ENSE00001630740.3" ; exon_number 1 ; gene_id "PTCH1--FMC1^PTCH1^ENSG00000185920.16" ; gene_name PTCH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020280.6" ; havana_transcript "OTTHUMT00000053229.3" ; hgnc_id "HGNC:9585" ; level 2 ; orig_coord_info "chr9,95508161,95508361,-" ; protein_id "ENSP00000332353.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PTCH1--FMC1^ENST00000331920.11" ; transcript_name "PTCH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTCH1--FMC1 HAVANA mRNA 2590 38427 . + . FI_gene_label "PTCH1^ENSG00000185920.16" ; ID "PTCH1--FMC1^ENST00000331920.11" ; Parent "PTCH1--FMC1^PTCH1^ENSG00000185920.16" ; ccdsid "CCDS6714.1" ; exon_id "ENSE00001630740.3" ; exon_number 1 ; gene_id "PTCH1--FMC1^PTCH1^ENSG00000185920.16" ; gene_name PTCH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020280.6" ; havana_transcript "OTTHUMT00000053229.3" ; hgnc_id "HGNC:9585" ; level 2 ; orig_coord_info "chr9,95508161,95508361,-" ; protein_id "ENSP00000332353.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PTCH1--FMC1^ENST00000331920.11" ; transcript_name "PTCH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTCH1--LUC7L2 ENSEMBL gene 44423 59028 . + . FI_gene_label "LUC7L2^ENSG00000146963.18" ; ID "PTCH1--LUC7L2^LUC7L2^ENSG00000146963.18" ; ccdsid "CCDS59085.1" ; exon_id "ENSE00003728623.1" ; exon_number 1 ; gene_id "PTCH1--LUC7L2^LUC7L2^ENSG00000146963.18" ; gene_name LUC7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185163.3" ; hgnc_id "HGNC:21608" ; level 3 ; orig_coord_info "chr7,139371412,139371463,+" ; protein_id "ENSP00000263545.7" ; tag basic CCDS ; transcript_id "PTCH1--LUC7L2^ENST00000263545.7" ; transcript_name "LUC7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTCH1--LUC7L2 ENSEMBL mRNA 44423 59028 . + . FI_gene_label "LUC7L2^ENSG00000146963.18" ; ID "PTCH1--LUC7L2^ENST00000263545.7" ; Parent "PTCH1--LUC7L2^LUC7L2^ENSG00000146963.18" ; ccdsid "CCDS59085.1" ; exon_id "ENSE00003728623.1" ; exon_number 1 ; gene_id "PTCH1--LUC7L2^LUC7L2^ENSG00000146963.18" ; gene_name LUC7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185163.3" ; hgnc_id "HGNC:21608" ; level 3 ; orig_coord_info "chr7,139371412,139371463,+" ; protein_id "ENSP00000263545.7" ; tag basic CCDS ; transcript_id "PTCH1--LUC7L2^ENST00000263545.7" ; transcript_name "LUC7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTCH1--LUC7L2 HAVANA gene 2590 38427 . + . FI_gene_label "PTCH1^ENSG00000185920.16" ; ID "PTCH1--LUC7L2^PTCH1^ENSG00000185920.16" ; ccdsid "CCDS6714.1" ; exon_id "ENSE00001630740.3" ; exon_number 1 ; gene_id "PTCH1--LUC7L2^PTCH1^ENSG00000185920.16" ; gene_name PTCH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020280.6" ; havana_transcript "OTTHUMT00000053229.3" ; hgnc_id "HGNC:9585" ; level 2 ; orig_coord_info "chr9,95508161,95508361,-" ; protein_id "ENSP00000332353.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PTCH1--LUC7L2^ENST00000331920.11" ; transcript_name "PTCH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTCH1--LUC7L2 HAVANA mRNA 2590 38427 . + . FI_gene_label "PTCH1^ENSG00000185920.16" ; ID "PTCH1--LUC7L2^ENST00000331920.11" ; Parent "PTCH1--LUC7L2^PTCH1^ENSG00000185920.16" ; ccdsid "CCDS6714.1" ; exon_id "ENSE00001630740.3" ; exon_number 1 ; gene_id "PTCH1--LUC7L2^PTCH1^ENSG00000185920.16" ; gene_name PTCH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020280.6" ; havana_transcript "OTTHUMT00000053229.3" ; hgnc_id "HGNC:9585" ; level 2 ; orig_coord_info "chr9,95508161,95508361,-" ; protein_id "ENSP00000332353.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PTCH1--LUC7L2^ENST00000331920.11" ; transcript_name "PTCH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPN3--ALK ENSEMBL gene 1001 34718 . + . FI_gene_label "PTPN3^ENSG00000070159.14" ; ID "PTPN3--ALK^PTPN3^ENSG00000070159.14" ; exon_id "ENSE00003737404.1" ; exon_number 2 ; gene_id "PTPN3--ALK^PTPN3^ENSG00000070159.14" ; gene_name PTPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020475.5" ; hgnc_id "HGNC:9655" ; level 3 ; orig_coord_info "chr9,109463297,109463434,-" ; protein_id "ENSP00000262539.4" ; tag basic ; transcript_id "PTPN3--ALK^ENST00000262539.7" ; transcript_name "PTPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTPN3--ALK ENSEMBL mRNA 1001 34718 . + . FI_gene_label "PTPN3^ENSG00000070159.14" ; ID "PTPN3--ALK^ENST00000262539.7" ; Parent "PTPN3--ALK^PTPN3^ENSG00000070159.14" ; exon_id "ENSE00003737404.1" ; exon_number 2 ; gene_id "PTPN3--ALK^PTPN3^ENSG00000070159.14" ; gene_name PTPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020475.5" ; hgnc_id "HGNC:9655" ; level 3 ; orig_coord_info "chr9,109463297,109463434,-" ; protein_id "ENSP00000262539.4" ; tag basic ; transcript_id "PTPN3--ALK^ENST00000262539.7" ; transcript_name "PTPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPN3--ALK HAVANA gene 37947 72951 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "PTPN3--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "PTPN3--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTPN3--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPN3--ALK HAVANA mRNA 37947 72951 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "PTPN3--ALK^ENST00000389048.8" ; Parent "PTPN3--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "PTPN3--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTPN3--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPN3--CPOX ENSEMBL gene 1001 34718 . + . FI_gene_label "PTPN3^ENSG00000070159.14" ; ID "PTPN3--CPOX^PTPN3^ENSG00000070159.14" ; exon_id "ENSE00003737404.1" ; exon_number 2 ; gene_id "PTPN3--CPOX^PTPN3^ENSG00000070159.14" ; gene_name PTPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020475.5" ; hgnc_id "HGNC:9655" ; level 3 ; orig_coord_info "chr9,109463297,109463434,-" ; protein_id "ENSP00000262539.4" ; tag basic ; transcript_id "PTPN3--CPOX^ENST00000262539.7" ; transcript_name "PTPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTPN3--CPOX ENSEMBL mRNA 1001 34718 . + . FI_gene_label "PTPN3^ENSG00000070159.14" ; ID "PTPN3--CPOX^ENST00000262539.7" ; Parent "PTPN3--CPOX^PTPN3^ENSG00000070159.14" ; exon_id "ENSE00003737404.1" ; exon_number 2 ; gene_id "PTPN3--CPOX^PTPN3^ENSG00000070159.14" ; gene_name PTPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020475.5" ; hgnc_id "HGNC:9655" ; level 3 ; orig_coord_info "chr9,109463297,109463434,-" ; protein_id "ENSP00000262539.4" ; tag basic ; transcript_id "PTPN3--CPOX^ENST00000262539.7" ; transcript_name "PTPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPN3--CPOX HAVANA gene 37947 41140 . + . FI_gene_label "CPOX^ENSG00000080819.9" ; ID "PTPN3--CPOX^CPOX^ENSG00000080819.9" ; exon_id "ENSE00002040563.1" ; exon_number 1 ; gene_id "PTPN3--CPOX^CPOX^ENSG00000080819.9" ; gene_name CPOX ; gene_type protein_coding ; havana_gene "OTTHUMG00000193356.2" ; havana_transcript "OTTHUMT00000358902.1" ; hgnc_id "HGNC:2321" ; level 2 ; orig_coord_info "chr3,98592998,98593504,-" ; protein_id "ENSP00000424924.1" ; tag low_sequence_quality ; transcript_id "PTPN3--CPOX^ENST00000513674.1" ; transcript_name "CPOX-202" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
PTPN3--CPOX HAVANA mRNA 37947 41140 . + . FI_gene_label "CPOX^ENSG00000080819.9" ; ID "PTPN3--CPOX^ENST00000513674.1" ; Parent "PTPN3--CPOX^CPOX^ENSG00000080819.9" ; exon_id "ENSE00002040563.1" ; exon_number 1 ; gene_id "PTPN3--CPOX^CPOX^ENSG00000080819.9" ; gene_name CPOX ; gene_type protein_coding ; havana_gene "OTTHUMG00000193356.2" ; havana_transcript "OTTHUMT00000358902.1" ; hgnc_id "HGNC:2321" ; level 2 ; orig_coord_info "chr3,98592998,98593504,-" ; protein_id "ENSP00000424924.1" ; tag low_sequence_quality ; transcript_id "PTPN3--CPOX^ENST00000513674.1" ; transcript_name "CPOX-202" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
SENP7--CSGALNACT1 HAVANA gene 1001 28901 . + . FI_gene_label "SENP7^ENSG00000138468.16" ; ID "SENP7--CSGALNACT1^SENP7^ENSG00000138468.16" ; ccdsid "CCDS63706.1" ; exon_id "ENSE00001847751.1" ; exon_number 1 ; gene_id "SENP7--CSGALNACT1^SENP7^ENSG00000138468.16" ; gene_name SENP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149927.4" ; havana_transcript "OTTHUMT00000313960.1" ; hgnc_id "HGNC:30402" ; level 2 ; orig_coord_info "chr3,101513091,101513130,-" ; protein_id "ENSP00000313624.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "SENP7--CSGALNACT1^ENST00000314261.11" ; transcript_name "SENP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
SENP7--CSGALNACT1 HAVANA mRNA 1001 28901 . + . FI_gene_label "SENP7^ENSG00000138468.16" ; ID "SENP7--CSGALNACT1^ENST00000314261.11" ; Parent "SENP7--CSGALNACT1^SENP7^ENSG00000138468.16" ; ccdsid "CCDS63706.1" ; exon_id "ENSE00001847751.1" ; exon_number 1 ; gene_id "SENP7--CSGALNACT1^SENP7^ENSG00000138468.16" ; gene_name SENP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149927.4" ; havana_transcript "OTTHUMT00000313960.1" ; hgnc_id "HGNC:30402" ; level 2 ; orig_coord_info "chr3,101513091,101513130,-" ; protein_id "ENSP00000313624.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "SENP7--CSGALNACT1^ENST00000314261.11" ; transcript_name "SENP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SENP7--CSGALNACT1 HAVANA gene 35582 56106 . + . FI_gene_label "CSGALNACT1^ENSG00000147408.14" ; ID "SENP7--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; ccdsid "CCDS6010.1" ; exon_id "ENSE00001391788.1" ; exon_number 4 ; gene_id "SENP7--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; gene_name CSGALNACT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130827.5" ; havana_transcript "OTTHUMT00000253381.1" ; hgnc_id "HGNC:24290" ; level 2 ; orig_coord_info "chr8,19505201,19505834,-" ; protein_id "ENSP00000330805.6" ; tag basic appris_principal_1 CCDS ; transcript_id "SENP7--CSGALNACT1^ENST00000332246.10" ; transcript_name "CSGALNACT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SENP7--CSGALNACT1 HAVANA mRNA 35582 56106 . + . FI_gene_label "CSGALNACT1^ENSG00000147408.14" ; ID "SENP7--CSGALNACT1^ENST00000332246.10" ; Parent "SENP7--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; ccdsid "CCDS6010.1" ; exon_id "ENSE00001391788.1" ; exon_number 4 ; gene_id "SENP7--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; gene_name CSGALNACT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130827.5" ; havana_transcript "OTTHUMT00000253381.1" ; hgnc_id "HGNC:24290" ; level 2 ; orig_coord_info "chr8,19505201,19505834,-" ; protein_id "ENSP00000330805.6" ; tag basic appris_principal_1 CCDS ; transcript_id "SENP7--CSGALNACT1^ENST00000332246.10" ; transcript_name "CSGALNACT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SHC3--CSGALNACT1 HAVANA gene 29059 49583 . + . FI_gene_label "CSGALNACT1^ENSG00000147408.14" ; ID "SHC3--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; ccdsid "CCDS6010.1" ; exon_id "ENSE00001391788.1" ; exon_number 4 ; gene_id "SHC3--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; gene_name CSGALNACT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130827.5" ; havana_transcript "OTTHUMT00000253381.1" ; hgnc_id "HGNC:24290" ; level 2 ; orig_coord_info "chr8,19505201,19505834,-" ; protein_id "ENSP00000330805.6" ; tag basic appris_principal_1 CCDS ; transcript_id "SHC3--CSGALNACT1^ENST00000332246.10" ; transcript_name "CSGALNACT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SHC3--CSGALNACT1 HAVANA mRNA 29059 49583 . + . FI_gene_label "CSGALNACT1^ENSG00000147408.14" ; ID "SHC3--CSGALNACT1^ENST00000332246.10" ; Parent "SHC3--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; ccdsid "CCDS6010.1" ; exon_id "ENSE00001391788.1" ; exon_number 4 ; gene_id "SHC3--CSGALNACT1^CSGALNACT1^ENSG00000147408.14" ; gene_name CSGALNACT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130827.5" ; havana_transcript "OTTHUMT00000253381.1" ; hgnc_id "HGNC:24290" ; level 2 ; orig_coord_info "chr8,19505201,19505834,-" ; protein_id "ENSP00000330805.6" ; tag basic appris_principal_1 CCDS ; transcript_id "SHC3--CSGALNACT1^ENST00000332246.10" ; transcript_name "CSGALNACT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SHC3--CSGALNACT1 HAVANA gene 11607 13641 . + . FI_gene_label "SHC3^ENSG00000148082.10" ; ID "SHC3--CSGALNACT1^SHC3^ENSG00000148082.10" ; exon_id "ENSE00001468512.1" ; exon_number 1 ; gene_id "SHC3--CSGALNACT1^SHC3^ENSG00000148082.10" ; gene_name SHC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020179.3" ; havana_transcript "OTTHUMT00000052987.1" ; hgnc_id "HGNC:18181" ; level 2 ; orig_coord_info "chr9,89042026,89042029,-" ; protein_id "ENSP00000364991.1" ; tag basic ; transcript_id "SHC3--CSGALNACT1^ENST00000375831.1" ; transcript_name "SHC3-201" ; transcript_support_level 2 ; transcript_type protein_coding
SHC3--CSGALNACT1 HAVANA mRNA 11607 13641 . + . FI_gene_label "SHC3^ENSG00000148082.10" ; ID "SHC3--CSGALNACT1^ENST00000375831.1" ; Parent "SHC3--CSGALNACT1^SHC3^ENSG00000148082.10" ; exon_id "ENSE00001468512.1" ; exon_number 1 ; gene_id "SHC3--CSGALNACT1^SHC3^ENSG00000148082.10" ; gene_name SHC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020179.3" ; havana_transcript "OTTHUMT00000052987.1" ; hgnc_id "HGNC:18181" ; level 2 ; orig_coord_info "chr9,89042026,89042029,-" ; protein_id "ENSP00000364991.1" ; tag basic ; transcript_id "SHC3--CSGALNACT1^ENST00000375831.1" ; transcript_name "SHC3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SND1--AC004875.1 HAVANA gene 1001 37596 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "SND1--AC004875.1^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "SND1--AC004875.1^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--AC004875.1^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SND1--AC004875.1 HAVANA mRNA 1001 37596 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "SND1--AC004875.1^ENST00000354725.8" ; Parent "SND1--AC004875.1^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "SND1--AC004875.1^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--AC004875.1^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SND1--AC006971.1 HAVANA gene 1001 37596 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "SND1--AC006971.1^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "SND1--AC006971.1^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--AC006971.1^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SND1--AC006971.1 HAVANA mRNA 1001 37596 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "SND1--AC006971.1^ENST00000354725.8" ; Parent "SND1--AC006971.1^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "SND1--AC006971.1^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--AC006971.1^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SND1--CFTR HAVANA gene 46932 82713 . + . FI_gene_label "CFTR^ENSG00000001626.16" ; ID "SND1--CFTR^CFTR^ENSG00000001626.16" ; ccdsid "CCDS5773.1" ; exon_id "ENSE00001343851.2" ; exon_number 1 ; gene_id "SND1--CFTR^CFTR^ENSG00000001626.16" ; gene_name CFTR ; gene_type protein_coding ; havana_gene "OTTHUMG00000023076.18" ; havana_transcript "OTTHUMT00000059397.6" ; hgnc_id "HGNC:1884" ; level 2 ; orig_coord_info "chr7,117480095,117480147,+" ; protein_id "ENSP00000003084.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--CFTR^ENST00000003084.11" ; transcript_name "CFTR-201" ; transcript_support_level 1 ; transcript_type protein_coding
SND1--CFTR HAVANA mRNA 46932 82713 . + . FI_gene_label "CFTR^ENSG00000001626.16" ; ID "SND1--CFTR^ENST00000003084.11" ; Parent "SND1--CFTR^CFTR^ENSG00000001626.16" ; ccdsid "CCDS5773.1" ; exon_id "ENSE00001343851.2" ; exon_number 1 ; gene_id "SND1--CFTR^CFTR^ENSG00000001626.16" ; gene_name CFTR ; gene_type protein_coding ; havana_gene "OTTHUMG00000023076.18" ; havana_transcript "OTTHUMT00000059397.6" ; hgnc_id "HGNC:1884" ; level 2 ; orig_coord_info "chr7,117480095,117480147,+" ; protein_id "ENSP00000003084.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--CFTR^ENST00000003084.11" ; transcript_name "CFTR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SND1--CFTR HAVANA gene 1001 37596 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "SND1--CFTR^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "SND1--CFTR^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--CFTR^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SND1--CFTR HAVANA mRNA 1001 37596 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "SND1--CFTR^ENST00000354725.8" ; Parent "SND1--CFTR^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "SND1--CFTR^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--CFTR^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SND1--SEC61G-DT HAVANA gene 1001 37596 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "SND1--SEC61G-DT^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "SND1--SEC61G-DT^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--SEC61G-DT^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SND1--SEC61G-DT HAVANA mRNA 1001 37596 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "SND1--SEC61G-DT^ENST00000354725.8" ; Parent "SND1--SEC61G-DT^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "SND1--SEC61G-DT^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SND1--SEC61G-DT^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^ENST00000427199.3" ; Parent "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^ENST00000456936.4" ; Parent "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRMT61B--ALK HAVANA gene 1001 8236 . + . FI_gene_label "TRMT61B^ENSG00000171103.11" ; ID "TRMT61B--ALK^TRMT61B^ENSG00000171103.11" ; ccdsid "CCDS1768.1" ; exon_id "ENSE00001751691.3" ; exon_number 1 ; gene_id "TRMT61B--ALK^TRMT61B^ENSG00000171103.11" ; gene_name TRMT61B ; gene_type protein_coding ; havana_gene "OTTHUMG00000128433.3" ; havana_transcript "OTTHUMT00000250224.2" ; hgnc_id "HGNC:26070" ; level 2 ; orig_coord_info "chr2,28869579,28870277,-" ; protein_id "ENSP00000302801.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRMT61B--ALK^ENST00000306108.10" ; transcript_name "TRMT61B-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRMT61B--ALK HAVANA mRNA 1001 8236 . + . FI_gene_label "TRMT61B^ENSG00000171103.11" ; ID "TRMT61B--ALK^ENST00000306108.10" ; Parent "TRMT61B--ALK^TRMT61B^ENSG00000171103.11" ; ccdsid "CCDS1768.1" ; exon_id "ENSE00001751691.3" ; exon_number 1 ; gene_id "TRMT61B--ALK^TRMT61B^ENSG00000171103.11" ; gene_name TRMT61B ; gene_type protein_coding ; havana_gene "OTTHUMG00000128433.3" ; havana_transcript "OTTHUMT00000250224.2" ; hgnc_id "HGNC:26070" ; level 2 ; orig_coord_info "chr2,28869579,28870277,-" ; protein_id "ENSP00000302801.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRMT61B--ALK^ENST00000306108.10" ; transcript_name "TRMT61B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRMT61B--ALK HAVANA gene 11237 46241 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "TRMT61B--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "TRMT61B--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRMT61B--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRMT61B--ALK HAVANA mRNA 11237 46241 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "TRMT61B--ALK^ENST00000389048.8" ; Parent "TRMT61B--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "TRMT61B--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRMT61B--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WDFY2--HMGB1 HAVANA gene 1008 30071 . + . FI_gene_label "WDFY2^ENSG00000139668.9" ; ID "WDFY2--HMGB1^WDFY2^ENSG00000139668.9" ; ccdsid "CCDS9429.1" ; exon_id "ENSE00001092625.5" ; exon_number 1 ; gene_id "WDFY2--HMGB1^WDFY2^ENSG00000139668.9" ; gene_name WDFY2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017407.6" ; havana_transcript "OTTHUMT00000045985.5" ; hgnc_id "HGNC:20482" ; level 2 ; orig_coord_info "chr13,51584688,51584824,+" ; protein_id "ENSP00000298125.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDFY2--HMGB1^ENST00000298125.7" ; transcript_name "WDFY2-201" ; transcript_support_level 1 ; transcript_type protein_coding
WDFY2--HMGB1 HAVANA mRNA 1008 30071 . + . FI_gene_label "WDFY2^ENSG00000139668.9" ; ID "WDFY2--HMGB1^ENST00000298125.7" ; Parent "WDFY2--HMGB1^WDFY2^ENSG00000139668.9" ; ccdsid "CCDS9429.1" ; exon_id "ENSE00001092625.5" ; exon_number 1 ; gene_id "WDFY2--HMGB1^WDFY2^ENSG00000139668.9" ; gene_name WDFY2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017407.6" ; havana_transcript "OTTHUMT00000045985.5" ; hgnc_id "HGNC:20482" ; level 2 ; orig_coord_info "chr13,51584688,51584824,+" ; protein_id "ENSP00000298125.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDFY2--HMGB1^ENST00000298125.7" ; transcript_name "WDFY2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WDFY2--HMGB1 HAVANA gene 34999 39441 . + . FI_gene_label "HMGB1^ENSG00000189403.15" ; ID "WDFY2--HMGB1^HMGB1^ENSG00000189403.15" ; ccdsid "CCDS86347.1" ; exon_id "ENSE00001384053.2" ; exon_number 2 ; gene_id "WDFY2--HMGB1^HMGB1^ENSG00000189403.15" ; gene_name HMGB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016670.8" ; havana_transcript "OTTHUMT00000044358.1" ; hgnc_id "HGNC:4983" ; level 2 ; orig_coord_info "chr13,30463531,30463680,-" ; protein_id "ENSP00000369904.1" ; tag basic CCDS ; transcript_id "WDFY2--HMGB1^ENST00000326004.4" ; transcript_name "HMGB1-201" ; transcript_support_level 3 ; transcript_type protein_coding
WDFY2--HMGB1 HAVANA mRNA 34999 39441 . + . FI_gene_label "HMGB1^ENSG00000189403.15" ; ID "WDFY2--HMGB1^ENST00000326004.4" ; Parent "WDFY2--HMGB1^HMGB1^ENSG00000189403.15" ; ccdsid "CCDS86347.1" ; exon_id "ENSE00001384053.2" ; exon_number 2 ; gene_id "WDFY2--HMGB1^HMGB1^ENSG00000189403.15" ; gene_name HMGB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016670.8" ; havana_transcript "OTTHUMT00000044358.1" ; hgnc_id "HGNC:4983" ; level 2 ; orig_coord_info "chr13,30463531,30463680,-" ; protein_id "ENSP00000369904.1" ; tag basic CCDS ; transcript_id "WDFY2--HMGB1^ENST00000326004.4" ; transcript_name "HMGB1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
XPA--AL512605.1 HAVANA gene 1001 8999 . + . FI_gene_label "XPA^ENSG00000136936.11" ; ID "XPA--AL512605.1^XPA^ENSG00000136936.11" ; ccdsid "CCDS6729.1" ; exon_id "ENSE00001465835.4" ; exon_number 1 ; gene_id "XPA--AL512605.1^XPA^ENSG00000136936.11" ; gene_name XPA ; gene_type protein_coding ; havana_gene "OTTHUMG00000020330.3" ; havana_transcript "OTTHUMT00000053332.1" ; hgnc_id "HGNC:12814" ; level 2 ; orig_coord_info "chr9,97697121,97697292,-" ; protein_id "ENSP00000364270.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "XPA--AL512605.1^ENST00000375128.5" ; transcript_name "XPA-201" ; transcript_support_level 1 ; transcript_type protein_coding
XPA--AL512605.1 HAVANA mRNA 1001 8999 . + . FI_gene_label "XPA^ENSG00000136936.11" ; ID "XPA--AL512605.1^ENST00000375128.5" ; Parent "XPA--AL512605.1^XPA^ENSG00000136936.11" ; ccdsid "CCDS6729.1" ; exon_id "ENSE00001465835.4" ; exon_number 1 ; gene_id "XPA--AL512605.1^XPA^ENSG00000136936.11" ; gene_name XPA ; gene_type protein_coding ; havana_gene "OTTHUMG00000020330.3" ; havana_transcript "OTTHUMT00000053332.1" ; hgnc_id "HGNC:12814" ; level 2 ; orig_coord_info "chr9,97697121,97697292,-" ; protein_id "ENSP00000364270.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "XPA--AL512605.1^ENST00000375128.5" ; transcript_name "XPA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZC3H13--AL356863.1 HAVANA gene 1014 29023 . + . FI_gene_label "ZC3H13^ENSG00000123200.17" ; ID "ZC3H13--AL356863.1^ZC3H13^ENSG00000123200.17" ; ccdsid "CCDS81766.1" ; exon_id "ENSE00001479353.1" ; exon_number 2 ; gene_id "ZC3H13--AL356863.1^ZC3H13^ENSG00000123200.17" ; gene_name ZC3H13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016863.5" ; havana_transcript "OTTHUMT00000044789.1" ; hgnc_id "HGNC:20368" ; level 2 ; orig_coord_info "chr13,46045391,46045507,-" ; protein_id "ENSP00000242848.4" ; tag basic appris_principal_3 CCDS ; transcript_id "ZC3H13--AL356863.1^ENST00000242848.8" ; transcript_name "ZC3H13-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZC3H13--AL356863.1 HAVANA mRNA 1014 29023 . + . FI_gene_label "ZC3H13^ENSG00000123200.17" ; ID "ZC3H13--AL356863.1^ENST00000242848.8" ; Parent "ZC3H13--AL356863.1^ZC3H13^ENSG00000123200.17" ; ccdsid "CCDS81766.1" ; exon_id "ENSE00001479353.1" ; exon_number 2 ; gene_id "ZC3H13--AL356863.1^ZC3H13^ENSG00000123200.17" ; gene_name ZC3H13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016863.5" ; havana_transcript "OTTHUMT00000044789.1" ; hgnc_id "HGNC:20368" ; level 2 ; orig_coord_info "chr13,46045391,46045507,-" ; protein_id "ENSP00000242848.4" ; tag basic appris_principal_3 CCDS ; transcript_id "ZC3H13--AL356863.1^ENST00000242848.8" ; transcript_name "ZC3H13-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZC3H13--LINC00437 HAVANA gene 1014 29023 . + . FI_gene_label "ZC3H13^ENSG00000123200.17" ; ID "ZC3H13--LINC00437^ZC3H13^ENSG00000123200.17" ; ccdsid "CCDS81766.1" ; exon_id "ENSE00001479353.1" ; exon_number 2 ; gene_id "ZC3H13--LINC00437^ZC3H13^ENSG00000123200.17" ; gene_name ZC3H13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016863.5" ; havana_transcript "OTTHUMT00000044789.1" ; hgnc_id "HGNC:20368" ; level 2 ; orig_coord_info "chr13,46045391,46045507,-" ; protein_id "ENSP00000242848.4" ; tag basic appris_principal_3 CCDS ; transcript_id "ZC3H13--LINC00437^ENST00000242848.8" ; transcript_name "ZC3H13-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZC3H13--LINC00437 HAVANA mRNA 1014 29023 . + . FI_gene_label "ZC3H13^ENSG00000123200.17" ; ID "ZC3H13--LINC00437^ENST00000242848.8" ; Parent "ZC3H13--LINC00437^ZC3H13^ENSG00000123200.17" ; ccdsid "CCDS81766.1" ; exon_id "ENSE00001479353.1" ; exon_number 2 ; gene_id "ZC3H13--LINC00437^ZC3H13^ENSG00000123200.17" ; gene_name ZC3H13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016863.5" ; havana_transcript "OTTHUMT00000044789.1" ; hgnc_id "HGNC:20368" ; level 2 ; orig_coord_info "chr13,46045391,46045507,-" ; protein_id "ENSP00000242848.4" ; tag basic appris_principal_3 CCDS ; transcript_id "ZC3H13--LINC00437^ENST00000242848.8" ; transcript_name "ZC3H13-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZNF419--ZNF772 HAVANA gene 1040 9388 . + . FI_gene_label "ZNF419^ENSG00000105136.21" ; ID "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; ccdsid "CCDS54326.1" ; exon_id "ENSE00002119234.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; gene_name ZNF419 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037073.10" ; havana_transcript "OTTHUMT00000378506.1" ; hgnc_id "HGNC:20648" ; level 2 ; orig_coord_info "chr19,57487951,57487983,+" ; protein_id "ENSP00000221735.7" ; tag NAGNAG_splice_site basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000221735.12" ; transcript_name "ZNF419-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF419--ZNF772 HAVANA mRNA 1040 9388 . + . FI_gene_label "ZNF419^ENSG00000105136.21" ; ID "ZNF419--ZNF772^ENST00000221735.12" ; Parent "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; ccdsid "CCDS54326.1" ; exon_id "ENSE00002119234.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; gene_name ZNF419 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037073.10" ; havana_transcript "OTTHUMT00000378506.1" ; hgnc_id "HGNC:20648" ; level 2 ; orig_coord_info "chr19,57487951,57487983,+" ; protein_id "ENSP00000221735.7" ; tag NAGNAG_splice_site basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000221735.12" ; transcript_name "ZNF419-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF419--ZNF772 HAVANA gene 12389 20373 . + . FI_gene_label "ZNF772^ENSG00000197128.12" ; ID "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; ccdsid "CCDS33133.1" ; exon_id "ENSE00003691113.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; gene_name ZNF772 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168007.3" ; havana_transcript "OTTHUMT00000397447.1" ; hgnc_id "HGNC:33106" ; level 2 ; orig_coord_info "chr19,57477277,57477309,-" ; protein_id "ENSP00000341165.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000343280.8" ; transcript_name "ZNF772-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF419--ZNF772 HAVANA mRNA 12389 20373 . + . FI_gene_label "ZNF772^ENSG00000197128.12" ; ID "ZNF419--ZNF772^ENST00000343280.8" ; Parent "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; ccdsid "CCDS33133.1" ; exon_id "ENSE00003691113.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; gene_name ZNF772 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168007.3" ; havana_transcript "OTTHUMT00000397447.1" ; hgnc_id "HGNC:33106" ; level 2 ; orig_coord_info "chr19,57477277,57477309,-" ; protein_id "ENSP00000341165.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000343280.8" ; transcript_name "ZNF772-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC005993.1--RGS6 HAVANA gene 1001 4837 . + . FI_gene_label "AC005993.1^ENSG00000266869.2" ; ID "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; exon_id "ENSE00002516676.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; gene_name "AC005993.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179238.4" ; havana_transcript "OTTHUMT00000445384.1" ; level 2 ; orig_coord_info "chr14,71848606,71848736,+" ; transcript_id "AC005993.1--RGS6^ENST00000555581.1" ; transcript_name "AC005993.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC005993.1--RGS6 HAVANA RNA 1001 4837 . + . FI_gene_label "AC005993.1^ENSG00000266869.2" ; ID "AC005993.1--RGS6^ENST00000555581.1" ; Parent "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; exon_id "ENSE00002516676.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; gene_name "AC005993.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179238.4" ; havana_transcript "OTTHUMT00000445384.1" ; level 2 ; orig_coord_info "chr14,71848606,71848736,+" ; transcript_id "AC005993.1--RGS6^ENST00000555581.1" ; transcript_name "AC005993.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AC020550.2--APBA1 HAVANA gene 1001 2134 . + . FI_gene_label "AC020550.2^ENSG00000287858.1" ; ID "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; exon_id "ENSE00003881987.1" ; exon_number 1 ; gene_id "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; gene_name "AC020550.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195766.1" ; havana_transcript "OTTHUMT00000528638.1" ; level 2 ; orig_coord_info "chr2,197640441,197640501,+" ; tag basic TAGENE ; transcript_id "AC020550.2--APBA1^ENST00000664764.1" ; transcript_name "AC020550.2-201" ; transcript_type lncRNA
AC020550.2--APBA1 HAVANA RNA 1001 2134 . + . FI_gene_label "AC020550.2^ENSG00000287858.1" ; ID "AC020550.2--APBA1^ENST00000664764.1" ; Parent "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; exon_id "ENSE00003881987.1" ; exon_number 1 ; gene_id "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; gene_name "AC020550.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195766.1" ; havana_transcript "OTTHUMT00000528638.1" ; level 2 ; orig_coord_info "chr2,197640441,197640501,+" ; tag basic TAGENE ; transcript_id "AC020550.2--APBA1^ENST00000664764.1" ; transcript_name "AC020550.2-201" ; transcript_type lncRNA
L1 and L2 created:
AC078846.1--SND1 HAVANA gene 1001 8083 . + . FI_gene_label "AC078846.1^ENSG00000273329.1" ; ID "AC078846.1--SND1^AC078846.1^ENSG00000273329.1" ; exon_id "ENSE00003705442.1" ; exon_number 1 ; gene_id "AC078846.1--SND1^AC078846.1^ENSG00000273329.1" ; gene_name "AC078846.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186330.1" ; havana_transcript "OTTHUMT00000472943.1" ; level 2 ; orig_coord_info "chr7,129604548,129611630,-" ; tag CAGE_supported_TSS basic ; transcript_id "AC078846.1--SND1^ENST00000608694.1" ; transcript_name "AC078846.1-201" ; transcript_support_level NA ; transcript_type lncRNA
AC078846.1--SND1 HAVANA RNA 1001 8083 . + . FI_gene_label "AC078846.1^ENSG00000273329.1" ; ID "AC078846.1--SND1^ENST00000608694.1" ; Parent "AC078846.1--SND1^AC078846.1^ENSG00000273329.1" ; exon_id "ENSE00003705442.1" ; exon_number 1 ; gene_id "AC078846.1--SND1^AC078846.1^ENSG00000273329.1" ; gene_name "AC078846.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186330.1" ; havana_transcript "OTTHUMT00000472943.1" ; level 2 ; orig_coord_info "chr7,129604548,129611630,-" ; tag CAGE_supported_TSS basic ; transcript_id "AC078846.1--SND1^ENST00000608694.1" ; transcript_name "AC078846.1-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
AC097533.1--TRPC3 HAVANA gene 1001 1479 . + . FI_gene_label "AC097533.1^ENSG00000237868.1" ; ID "AC097533.1--TRPC3^AC097533.1^ENSG00000237868.1" ; exon_id "ENSE00001636424.1" ; exon_number 1 ; gene_id "AC097533.1--TRPC3^AC097533.1^ENSG00000237868.1" ; gene_name "AC097533.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000150117.1" ; havana_transcript "OTTHUMT00000316430.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr4,122077840,122078318,-" ; tag pseudo_consens basic ; transcript_id "AC097533.1--TRPC3^ENST00000413478.1" ; transcript_name "AC097533.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AC097533.1--TRPC3 HAVANA RNA 1001 1479 . + . FI_gene_label "AC097533.1^ENSG00000237868.1" ; ID "AC097533.1--TRPC3^ENST00000413478.1" ; Parent "AC097533.1--TRPC3^AC097533.1^ENSG00000237868.1" ; exon_id "ENSE00001636424.1" ; exon_number 1 ; gene_id "AC097533.1--TRPC3^AC097533.1^ENSG00000237868.1" ; gene_name "AC097533.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000150117.1" ; havana_transcript "OTTHUMT00000316430.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr4,122077840,122078318,-" ; tag pseudo_consens basic ; transcript_id "AC097533.1--TRPC3^ENST00000413478.1" ; transcript_name "AC097533.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AC104041.1--APBA1 HAVANA gene 3640 17052 . + . FI_gene_label "AC104041.1^ENSG00000259692.6" ; ID "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; exon_id "ENSE00002541371.1" ; exon_number 1 ; gene_id "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; gene_name "AC104041.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172170.6" ; havana_transcript "OTTHUMT00000417173.2" ; level 2 ; orig_coord_info "chr15,81995427,81995666,-" ; tag basic ; transcript_id "AC104041.1--APBA1^ENST00000559299.2" ; transcript_name "AC104041.1-204" ; transcript_support_level 4 ; transcript_type lncRNA
AC104041.1--APBA1 HAVANA RNA 3640 17052 . + . FI_gene_label "AC104041.1^ENSG00000259692.6" ; ID "AC104041.1--APBA1^ENST00000559299.2" ; Parent "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; exon_id "ENSE00002541371.1" ; exon_number 1 ; gene_id "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; gene_name "AC104041.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172170.6" ; havana_transcript "OTTHUMT00000417173.2" ; level 2 ; orig_coord_info "chr15,81995427,81995666,-" ; tag basic ; transcript_id "AC104041.1--APBA1^ENST00000559299.2" ; transcript_name "AC104041.1-204" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
ACTBP6--ACTB HAVANA gene 1001 2090 . + . FI_gene_label "ACTBP6^ENSG00000203413.3" ; ID "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; exon_id "ENSE00002116857.1" ; exon_number 1 ; gene_id "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; gene_name ACTBP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164632.2" ; havana_transcript "OTTHUMT00000379462.2" ; hgnc_id "HGNC:139" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,84948585,84949674,+" ; tag pseudo_consens basic ; transcript_id "ACTBP6--ACTB^ENST00000520036.1" ; transcript_name "ACTBP6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ACTBP6--ACTB HAVANA RNA 1001 2090 . + . FI_gene_label "ACTBP6^ENSG00000203413.3" ; ID "ACTBP6--ACTB^ENST00000520036.1" ; Parent "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; exon_id "ENSE00002116857.1" ; exon_number 1 ; gene_id "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; gene_name ACTBP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164632.2" ; havana_transcript "OTTHUMT00000379462.2" ; hgnc_id "HGNC:139" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,84948585,84949674,+" ; tag pseudo_consens basic ; transcript_id "ACTBP6--ACTB^ENST00000520036.1" ; transcript_name "ACTBP6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AHCYL2--LINC01448 HAVANA gene 28254 31434 . + . FI_gene_label "LINC01448^ENSG00000238284.2" ; ID "AHCYL2--LINC01448^LINC01448^ENSG00000238284.2" ; exon_id "ENSE00001736594.1" ; exon_number 1 ; gene_id "AHCYL2--LINC01448^LINC01448^ENSG00000238284.2" ; gene_name LINC01448 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155126.2" ; havana_transcript "OTTHUMT00000338493.2" ; hgnc_id "HGNC:50790" ; level 2 ; orig_coord_info "chr7,42706231,42706447,-" ; tag basic TAGENE ; transcript_id "AHCYL2--LINC01448^ENST00000455947.2" ; transcript_name "LINC01448-201" ; transcript_support_level 1 ; transcript_type lncRNA
AHCYL2--LINC01448 HAVANA RNA 28254 31434 . + . FI_gene_label "LINC01448^ENSG00000238284.2" ; ID "AHCYL2--LINC01448^ENST00000455947.2" ; Parent "AHCYL2--LINC01448^LINC01448^ENSG00000238284.2" ; exon_id "ENSE00001736594.1" ; exon_number 1 ; gene_id "AHCYL2--LINC01448^LINC01448^ENSG00000238284.2" ; gene_name LINC01448 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155126.2" ; havana_transcript "OTTHUMT00000338493.2" ; hgnc_id "HGNC:50790" ; level 2 ; orig_coord_info "chr7,42706231,42706447,-" ; tag basic TAGENE ; transcript_id "AHCYL2--LINC01448^ENST00000455947.2" ; transcript_name "LINC01448-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
DELEC1--SENP7 HAVANA gene 11432 29056 . + . FI_gene_label "DELEC1^ENSG00000173077.16" ; ID "DELEC1--SENP7^DELEC1^ENSG00000173077.16" ; exon_id "ENSE00001462175.1" ; exon_number 1 ; gene_id "DELEC1--SENP7^DELEC1^ENSG00000173077.16" ; gene_name DELEC1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000020549.2" ; havana_transcript "OTTHUMT00000053791.2" ; hgnc_id "HGNC:23658" ; level 2 ; orig_coord_info "chr9,115141818,115141868,+" ; tag basic ; transcript_id "DELEC1--SENP7^ENST00000374016.5" ; transcript_name "DELEC1-201" ; transcript_support_level 1 ; transcript_type lncRNA
DELEC1--SENP7 HAVANA RNA 11432 29056 . + . FI_gene_label "DELEC1^ENSG00000173077.16" ; ID "DELEC1--SENP7^ENST00000374016.5" ; Parent "DELEC1--SENP7^DELEC1^ENSG00000173077.16" ; exon_id "ENSE00001462175.1" ; exon_number 1 ; gene_id "DELEC1--SENP7^DELEC1^ENSG00000173077.16" ; gene_name DELEC1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000020549.2" ; havana_transcript "OTTHUMT00000053791.2" ; hgnc_id "HGNC:23658" ; level 2 ; orig_coord_info "chr9,115141818,115141868,+" ; tag basic ; transcript_id "DELEC1--SENP7^ENST00000374016.5" ; transcript_name "DELEC1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
ERP44--AL162414.1 HAVANA gene 19739 22482 . + . FI_gene_label "AL162414.1^ENSG00000227531.1" ; ID "ERP44--AL162414.1^AL162414.1^ENSG00000227531.1" ; exon_id "ENSE00001633933.1" ; exon_number 1 ; gene_id "ERP44--AL162414.1^AL162414.1^ENSG00000227531.1" ; gene_name "AL162414.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020487.1" ; havana_transcript "OTTHUMT00000053635.1" ; level 1 ; orig_coord_info "chr9,111284620,111284836,-" ; tag basic exp_conf ; transcript_id "ERP44--AL162414.1^ENST00000426204.1" ; transcript_name "AL162414.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ERP44--AL162414.1 HAVANA RNA 19739 22482 . + . FI_gene_label "AL162414.1^ENSG00000227531.1" ; ID "ERP44--AL162414.1^ENST00000426204.1" ; Parent "ERP44--AL162414.1^AL162414.1^ENSG00000227531.1" ; exon_id "ENSE00001633933.1" ; exon_number 1 ; gene_id "ERP44--AL162414.1^AL162414.1^ENSG00000227531.1" ; gene_name "AL162414.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020487.1" ; havana_transcript "OTTHUMT00000053635.1" ; level 1 ; orig_coord_info "chr9,111284620,111284836,-" ; tag basic exp_conf ; transcript_id "ERP44--AL162414.1^ENST00000426204.1" ; transcript_name "AL162414.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
NCBP1--AL161629.2 HAVANA gene 28101 28375 . + . FI_gene_label "AL161629.2^ENSG00000278382.1" ; ID "NCBP1--AL161629.2^AL161629.2^ENSG00000278382.1" ; exon_id "ENSE00003742400.1" ; exon_number 1 ; gene_id "NCBP1--AL161629.2^AL161629.2^ENSG00000278382.1" ; gene_name "AL161629.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000187824.1" ; havana_transcript "OTTHUMT00000475595.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,90108244,90108518,+" ; tag pseudo_consens basic ; transcript_id "NCBP1--AL161629.2^ENST00000615347.1" ; transcript_name "AL161629.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NCBP1--AL161629.2 HAVANA RNA 28101 28375 . + . FI_gene_label "AL161629.2^ENSG00000278382.1" ; ID "NCBP1--AL161629.2^ENST00000615347.1" ; Parent "NCBP1--AL161629.2^AL161629.2^ENSG00000278382.1" ; exon_id "ENSE00003742400.1" ; exon_number 1 ; gene_id "NCBP1--AL161629.2^AL161629.2^ENSG00000278382.1" ; gene_name "AL161629.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000187824.1" ; havana_transcript "OTTHUMT00000475595.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,90108244,90108518,+" ; tag pseudo_consens basic ; transcript_id "NCBP1--AL161629.2^ENST00000615347.1" ; transcript_name "AL161629.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NCBP1--IL6RP1 HAVANA gene 28101 29373 . + . FI_gene_label "IL6RP1^ENSG00000234910.2" ; ID "NCBP1--IL6RP1^IL6RP1^ENSG00000234910.2" ; exon_id "ENSE00001712969.2" ; exon_number 1 ; gene_id "NCBP1--IL6RP1^IL6RP1^ENSG00000234910.2" ; gene_name IL6RP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020190.2" ; havana_transcript "OTTHUMT00000053005.2" ; hgnc_id "HGNC:6020" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr9,90081297,90082569,-" ; tag basic ; transcript_id "NCBP1--IL6RP1^ENST00000417848.2" ; transcript_name "IL6RP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NCBP1--IL6RP1 HAVANA RNA 28101 29373 . + . FI_gene_label "IL6RP1^ENSG00000234910.2" ; ID "NCBP1--IL6RP1^ENST00000417848.2" ; Parent "NCBP1--IL6RP1^IL6RP1^ENSG00000234910.2" ; exon_id "ENSE00001712969.2" ; exon_number 1 ; gene_id "NCBP1--IL6RP1^IL6RP1^ENSG00000234910.2" ; gene_name IL6RP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020190.2" ; havana_transcript "OTTHUMT00000053005.2" ; hgnc_id "HGNC:6020" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr9,90081297,90082569,-" ; tag basic ; transcript_id "NCBP1--IL6RP1^ENST00000417848.2" ; transcript_name "IL6RP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NPM1--MT-RNR2 ENSEMBL gene 18634 20192 . + . FI_gene_label "MT-RNR2^ENSG00000210082.2" ; ID "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; exon_id "ENSE00001544497.2" ; exon_number 1 ; gene_id "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; gene_name "MT-RNR2" ; gene_type Mt_rRNA ; hgnc_id "HGNC:7471" ; level 3 ; orig_coord_info "chrM,1671,3229,+" ; tag basic ; transcript_id "NPM1--MT-RNR2^ENST00000387347.2" ; transcript_name "MT-RNR2-201" ; transcript_support_level NA ; transcript_type Mt_rRNA
NPM1--MT-RNR2 ENSEMBL RNA 18634 20192 . + . FI_gene_label "MT-RNR2^ENSG00000210082.2" ; ID "NPM1--MT-RNR2^ENST00000387347.2" ; Parent "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; exon_id "ENSE00001544497.2" ; exon_number 1 ; gene_id "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; gene_name "MT-RNR2" ; gene_type Mt_rRNA ; hgnc_id "HGNC:7471" ; level 3 ; orig_coord_info "chrM,1671,3229,+" ; tag basic ; transcript_id "NPM1--MT-RNR2^ENST00000387347.2" ; transcript_name "MT-RNR2-201" ; transcript_support_level NA ; transcript_type Mt_rRNA
L1 and L2 created:
SND1--AC004875.1 HAVANA gene 40613 43422 . + . FI_gene_label "AC004875.1^ENSG00000227743.2" ; ID "SND1--AC004875.1^AC004875.1^ENSG00000227743.2" ; exon_id "ENSE00003835825.1" ; exon_number 1 ; gene_id "SND1--AC004875.1^AC004875.1^ENSG00000227743.2" ; gene_name "AC004875.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000157001.3" ; havana_transcript "OTTHUMT00000347040.2" ; level 1 ; orig_coord_info "chr7,121686132,121686363,-" ; tag basic exp_conf ; transcript_id "SND1--AC004875.1^ENST00000432702.2" ; transcript_name "AC004875.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
SND1--AC004875.1 HAVANA RNA 40613 43422 . + . FI_gene_label "AC004875.1^ENSG00000227743.2" ; ID "SND1--AC004875.1^ENST00000432702.2" ; Parent "SND1--AC004875.1^AC004875.1^ENSG00000227743.2" ; exon_id "ENSE00003835825.1" ; exon_number 1 ; gene_id "SND1--AC004875.1^AC004875.1^ENSG00000227743.2" ; gene_name "AC004875.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000157001.3" ; havana_transcript "OTTHUMT00000347040.2" ; level 1 ; orig_coord_info "chr7,121686132,121686363,-" ; tag basic exp_conf ; transcript_id "SND1--AC004875.1^ENST00000432702.2" ; transcript_name "AC004875.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
SND1--AC006971.1 HAVANA gene 40613 45098 . + . FI_gene_label "AC006971.1^ENSG00000218586.3" ; ID "SND1--AC006971.1^AC006971.1^ENSG00000218586.3" ; exon_id "ENSE00001556944.2" ; exon_number 1 ; gene_id "SND1--AC006971.1^AC006971.1^ENSG00000218586.3" ; gene_name "AC006971.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000156128.1" ; havana_transcript "OTTHUMT00000343093.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,54933699,54938184,+" ; tag pseudo_consens basic ; transcript_id "SND1--AC006971.1^ENST00000407916.2" ; transcript_name "AC006971.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SND1--AC006971.1 HAVANA RNA 40613 45098 . + . FI_gene_label "AC006971.1^ENSG00000218586.3" ; ID "SND1--AC006971.1^ENST00000407916.2" ; Parent "SND1--AC006971.1^AC006971.1^ENSG00000218586.3" ; exon_id "ENSE00001556944.2" ; exon_number 1 ; gene_id "SND1--AC006971.1^AC006971.1^ENSG00000218586.3" ; gene_name "AC006971.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000156128.1" ; havana_transcript "OTTHUMT00000343093.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,54933699,54938184,+" ; tag pseudo_consens basic ; transcript_id "SND1--AC006971.1^ENST00000407916.2" ; transcript_name "AC006971.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SND1--SEC61G-DT HAVANA gene 40690 43170 . + . FI_gene_label "SEC61G-DT^ENSG00000234707.3" ; ID "SND1--SEC61G-DT^SEC61G-DT^ENSG00000234707.3" ; exon_id "ENSE00001799116.1" ; exon_number 1 ; gene_id "SND1--SEC61G-DT^SEC61G-DT^ENSG00000234707.3" ; gene_name "SEC61G-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156071.4" ; havana_transcript "OTTHUMT00000342926.2" ; hgnc_id "HGNC:40835" ; level 2 ; orig_coord_info "chr7,54759425,54759524,+" ; transcript_id "SND1--SEC61G-DT^ENST00000439413.2" ; transcript_name "SEC61G-DT-201" ; transcript_support_level 2 ; transcript_type lncRNA
SND1--SEC61G-DT HAVANA RNA 40690 43170 . + . FI_gene_label "SEC61G-DT^ENSG00000234707.3" ; ID "SND1--SEC61G-DT^ENST00000439413.2" ; Parent "SND1--SEC61G-DT^SEC61G-DT^ENSG00000234707.3" ; exon_id "ENSE00001799116.1" ; exon_number 1 ; gene_id "SND1--SEC61G-DT^SEC61G-DT^ENSG00000234707.3" ; gene_name "SEC61G-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156071.4" ; havana_transcript "OTTHUMT00000342926.2" ; hgnc_id "HGNC:40835" ; level 2 ; orig_coord_info "chr7,54759425,54759524,+" ; transcript_id "SND1--SEC61G-DT^ENST00000439413.2" ; transcript_name "SEC61G-DT-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
STAG3L3--AC090114.3 HAVANA gene 1001 6049 . + . FI_gene_label "STAG3L3^ENSG00000174353.17" ; ID "STAG3L3--AC090114.3^STAG3L3^ENSG00000174353.17" ; exon_id "ENSE00001797769.2" ; exon_number 1 ; gene_id "STAG3L3--AC090114.3^STAG3L3^ENSG00000174353.17" ; gene_name STAG3L3 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000157064.4" ; havana_transcript "OTTHUMT00000347339.1" ; hgnc_id "HGNC:33845" ; level 2 ; orig_coord_info "chr7,73005576,73005922,-" ; tag basic ; transcript_id "STAG3L3--AC090114.3^ENST00000423834.6" ; transcript_name "STAG3L3-201" ; transcript_support_level 2 ; transcript_type processed_transcript
STAG3L3--AC090114.3 HAVANA RNA 1001 6049 . + . FI_gene_label "STAG3L3^ENSG00000174353.17" ; ID "STAG3L3--AC090114.3^ENST00000423834.6" ; Parent "STAG3L3--AC090114.3^STAG3L3^ENSG00000174353.17" ; exon_id "ENSE00001797769.2" ; exon_number 1 ; gene_id "STAG3L3--AC090114.3^STAG3L3^ENSG00000174353.17" ; gene_name STAG3L3 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000157064.4" ; havana_transcript "OTTHUMT00000347339.1" ; hgnc_id "HGNC:33845" ; level 2 ; orig_coord_info "chr7,73005576,73005922,-" ; tag basic ; transcript_id "STAG3L3--AC090114.3^ENST00000423834.6" ; transcript_name "STAG3L3-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
STAG3L3--AC090114.3 HAVANA gene 12979 21663 . + . FI_gene_label "AC090114.3^ENSG00000280828.1" ; ID "STAG3L3--AC090114.3^AC090114.3^ENSG00000280828.1" ; exon_id "ENSE00001826662.1" ; exon_number 1 ; gene_id "STAG3L3--AC090114.3^AC090114.3^ENSG00000280828.1" ; gene_name "AC090114.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000158229.2" ; havana_transcript "OTTHUMT00000350446.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,128533652,128533730,+" ; tag basic ; transcript_id "STAG3L3--AC090114.3^ENST00000479267.2" ; transcript_name "AC090114.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
STAG3L3--AC090114.3 HAVANA RNA 12979 21663 . + . FI_gene_label "AC090114.3^ENSG00000280828.1" ; ID "STAG3L3--AC090114.3^ENST00000479267.2" ; Parent "STAG3L3--AC090114.3^AC090114.3^ENSG00000280828.1" ; exon_id "ENSE00001826662.1" ; exon_number 1 ; gene_id "STAG3L3--AC090114.3^AC090114.3^ENSG00000280828.1" ; gene_name "AC090114.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000158229.2" ; havana_transcript "OTTHUMT00000350446.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,128533652,128533730,+" ; tag basic ; transcript_id "STAG3L3--AC090114.3^ENST00000479267.2" ; transcript_name "AC090114.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
STAG3L3--TLK2P1 HAVANA gene 1001 6049 . + . FI_gene_label "STAG3L3^ENSG00000174353.17" ; ID "STAG3L3--TLK2P1^STAG3L3^ENSG00000174353.17" ; exon_id "ENSE00001797769.2" ; exon_number 1 ; gene_id "STAG3L3--TLK2P1^STAG3L3^ENSG00000174353.17" ; gene_name STAG3L3 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000157064.4" ; havana_transcript "OTTHUMT00000347339.1" ; hgnc_id "HGNC:33845" ; level 2 ; orig_coord_info "chr7,73005576,73005922,-" ; tag basic ; transcript_id "STAG3L3--TLK2P1^ENST00000423834.6" ; transcript_name "STAG3L3-201" ; transcript_support_level 2 ; transcript_type processed_transcript
STAG3L3--TLK2P1 HAVANA RNA 1001 6049 . + . FI_gene_label "STAG3L3^ENSG00000174353.17" ; ID "STAG3L3--TLK2P1^ENST00000423834.6" ; Parent "STAG3L3--TLK2P1^STAG3L3^ENSG00000174353.17" ; exon_id "ENSE00001797769.2" ; exon_number 1 ; gene_id "STAG3L3--TLK2P1^STAG3L3^ENSG00000174353.17" ; gene_name STAG3L3 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000157064.4" ; havana_transcript "OTTHUMT00000347339.1" ; hgnc_id "HGNC:33845" ; level 2 ; orig_coord_info "chr7,73005576,73005922,-" ; tag basic ; transcript_id "STAG3L3--TLK2P1^ENST00000423834.6" ; transcript_name "STAG3L3-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
STAG3L3--TLK2P1 HAVANA gene 12979 16170 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "STAG3L3--TLK2P1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "STAG3L3--TLK2P1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "STAG3L3--TLK2P1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
STAG3L3--TLK2P1 HAVANA RNA 12979 16170 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "STAG3L3--TLK2P1^ENST00000530992.1" ; Parent "STAG3L3--TLK2P1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "STAG3L3--TLK2P1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "STAG3L3--TLK2P1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
STAG3L4--AC090114.3 HAVANA gene 2266 4501 . + . FI_gene_label "STAG3L4^ENSG00000106610.15" ; ID "STAG3L4--AC090114.3^STAG3L4^ENSG00000106610.15" ; exon_id "ENSE00002677705.1" ; exon_number 1 ; gene_id "STAG3L4--AC090114.3^STAG3L4^ENSG00000106610.15" ; gene_name STAG3L4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000156920.4" ; havana_transcript "OTTHUMT00000346612.1" ; hgnc_id "HGNC:33887" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,67305987,67306083,+" ; tag basic ; transcript_id "STAG3L4--AC090114.3^ENST00000352103.6" ; transcript_name "STAG3L4-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
STAG3L4--AC090114.3 HAVANA RNA 2266 4501 . + . FI_gene_label "STAG3L4^ENSG00000106610.15" ; ID "STAG3L4--AC090114.3^ENST00000352103.6" ; Parent "STAG3L4--AC090114.3^STAG3L4^ENSG00000106610.15" ; exon_id "ENSE00002677705.1" ; exon_number 1 ; gene_id "STAG3L4--AC090114.3^STAG3L4^ENSG00000106610.15" ; gene_name STAG3L4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000156920.4" ; havana_transcript "OTTHUMT00000346612.1" ; hgnc_id "HGNC:33887" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,67305987,67306083,+" ; tag basic ; transcript_id "STAG3L4--AC090114.3^ENST00000352103.6" ; transcript_name "STAG3L4-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
STAG3L4--AC090114.3 HAVANA gene 14840 23524 . + . FI_gene_label "AC090114.3^ENSG00000280828.1" ; ID "STAG3L4--AC090114.3^AC090114.3^ENSG00000280828.1" ; exon_id "ENSE00001826662.1" ; exon_number 1 ; gene_id "STAG3L4--AC090114.3^AC090114.3^ENSG00000280828.1" ; gene_name "AC090114.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000158229.2" ; havana_transcript "OTTHUMT00000350446.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,128533652,128533730,+" ; tag basic ; transcript_id "STAG3L4--AC090114.3^ENST00000479267.2" ; transcript_name "AC090114.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
STAG3L4--AC090114.3 HAVANA RNA 14840 23524 . + . FI_gene_label "AC090114.3^ENSG00000280828.1" ; ID "STAG3L4--AC090114.3^ENST00000479267.2" ; Parent "STAG3L4--AC090114.3^AC090114.3^ENSG00000280828.1" ; exon_id "ENSE00001826662.1" ; exon_number 1 ; gene_id "STAG3L4--AC090114.3^AC090114.3^ENSG00000280828.1" ; gene_name "AC090114.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000158229.2" ; havana_transcript "OTTHUMT00000350446.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,128533652,128533730,+" ; tag basic ; transcript_id "STAG3L4--AC090114.3^ENST00000479267.2" ; transcript_name "AC090114.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
XPA--AL512605.1 HAVANA gene 13487 13867 . + . FI_gene_label "AL512605.1^ENSG00000236252.2" ; ID "XPA--AL512605.1^AL512605.1^ENSG00000236252.2" ; exon_id "ENSE00002940255.1" ; exon_number 1 ; gene_id "XPA--AL512605.1^AL512605.1^ENSG00000236252.2" ; gene_name "AL512605.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000067344.2" ; havana_transcript "OTTHUMT00000144066.2" ; level 2 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr9,65222880,65223260,-" ; tag basic ; transcript_id "XPA--AL512605.1^ENST00000441919.2" ; transcript_name "AL512605.1-202" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
XPA--AL512605.1 HAVANA RNA 13487 13867 . + . FI_gene_label "AL512605.1^ENSG00000236252.2" ; ID "XPA--AL512605.1^ENST00000441919.2" ; Parent "XPA--AL512605.1^AL512605.1^ENSG00000236252.2" ; exon_id "ENSE00002940255.1" ; exon_number 1 ; gene_id "XPA--AL512605.1^AL512605.1^ENSG00000236252.2" ; gene_name "AL512605.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000067344.2" ; havana_transcript "OTTHUMT00000144066.2" ; level 2 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr9,65222880,65223260,-" ; tag basic ; transcript_id "XPA--AL512605.1^ENST00000441919.2" ; transcript_name "AL512605.1-202" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
L1 and L2 created:
ZC3H13--AL356863.1 HAVANA gene 32024 33103 . + . FI_gene_label "AL356863.1^ENSG00000279025.1" ; ID "ZC3H13--AL356863.1^AL356863.1^ENSG00000279025.1" ; exon_id "ENSE00003755855.1" ; exon_number 1 ; gene_id "ZC3H13--AL356863.1^AL356863.1^ENSG00000279025.1" ; gene_name "AL356863.1" ; gene_type TEC ; havana_gene "OTTHUMG00000175983.1" ; havana_transcript "OTTHUMT00000431345.1" ; level 2 ; orig_coord_info "chr13,38372856,38373935,+" ; tag basic ; transcript_id "ZC3H13--AL356863.1^ENST00000623378.1" ; transcript_name "AL356863.1-201" ; transcript_support_level NA ; transcript_type TEC
ZC3H13--AL356863.1 HAVANA RNA 32024 33103 . + . FI_gene_label "AL356863.1^ENSG00000279025.1" ; ID "ZC3H13--AL356863.1^ENST00000623378.1" ; Parent "ZC3H13--AL356863.1^AL356863.1^ENSG00000279025.1" ; exon_id "ENSE00003755855.1" ; exon_number 1 ; gene_id "ZC3H13--AL356863.1^AL356863.1^ENSG00000279025.1" ; gene_name "AL356863.1" ; gene_type TEC ; havana_gene "OTTHUMG00000175983.1" ; havana_transcript "OTTHUMT00000431345.1" ; level 2 ; orig_coord_info "chr13,38372856,38373935,+" ; tag basic ; transcript_id "ZC3H13--AL356863.1^ENST00000623378.1" ; transcript_name "AL356863.1-201" ; transcript_support_level NA ; transcript_type TEC
L1 and L2 created:
ZC3H13--LINC00437 HAVANA gene 32024 33814 . + . FI_gene_label "LINC00437^ENSG00000236354.1" ; ID "ZC3H13--LINC00437^LINC00437^ENSG00000236354.1" ; exon_id "ENSE00001613832.1" ; exon_number 1 ; gene_id "ZC3H13--LINC00437^LINC00437^ENSG00000236354.1" ; gene_name LINC00437 ; gene_type lncRNA ; havana_gene "OTTHUMG00000016756.1" ; havana_transcript "OTTHUMT00000044596.1" ; hgnc_id "HGNC:42772" ; level 1 ; orig_coord_info "chr13,38545187,38545299,-" ; tag basic exp_conf ; transcript_id "ZC3H13--LINC00437^ENST00000414161.1" ; transcript_name "LINC00437-201" ; transcript_support_level 1 ; transcript_type lncRNA
ZC3H13--LINC00437 HAVANA RNA 32024 33814 . + . FI_gene_label "LINC00437^ENSG00000236354.1" ; ID "ZC3H13--LINC00437^ENST00000414161.1" ; Parent "ZC3H13--LINC00437^LINC00437^ENSG00000236354.1" ; exon_id "ENSE00001613832.1" ; exon_number 1 ; gene_id "ZC3H13--LINC00437^LINC00437^ENSG00000236354.1" ; gene_name LINC00437 ; gene_type lncRNA ; havana_gene "OTTHUMG00000016756.1" ; havana_transcript "OTTHUMT00000044596.1" ; hgnc_id "HGNC:42772" ; level 1 ; orig_coord_info "chr13,38545187,38545299,-" ; tag basic exp_conf ; transcript_id "ZC3H13--LINC00437^ENST00000414161.1" ; transcript_name "LINC00437-201" ; transcript_support_level 1 ; transcript_type lncRNA
817 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1294 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 73 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 1 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed