.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA_FILTER (OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/102dace22b420934612381225869b8/.command.log
Size: 1.2 KB
Task: NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA_FILTER (OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/102dace22b420934612381225869b8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/102dace22b420934612381225869b8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/a8ae4e12e973961270835e3cfe1094/OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1.arriba.fusions.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-f79a17a0-988d-46c3-a0fc-cc7f26b06d9c/2f/783d5e3fc4bb0e4fc378bb3e8b5e61/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)


================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 0
Arriba filter: 0 rows -> 0 PASS; wrote OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv and OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1.arriba.fusions.filter_summary.txt