[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: A549_FFPE_01_RNA_0001_B23LG7FLT4_3_1.fastp.fastq.gz
A549_FFPE_01_RNA_0001_B23LG7FLT4_3_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ... done
[quant] processed 393,174 reads, 5,736 reads pseudoaligned
[quant] estimated average fragment length: 35.1978
[ em] quantifying the abundances ... done
[ em] the Expectation-Maximization algorithm ran for 646 rounds