.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (A673_FFPE_RNA_0001_B23LG7FLT4_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/9046e560706d413443f0121793fbc8/.command.log
Size: 141.9 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (A673_FFPE_RNA_0001_B23LG7FLT4_2)
Attempt
Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/f17243c385eb3f99df17fffe6ea00f/fi_workdir/A673_FFPE_RNA_0001_B23LG7FLT4_2.gtf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/9046e560706d413443f0121793fbc8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/9046e560706d413443f0121793fbc8/.command.run
==> STAGING COMPLETE (3 inputs)

Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file

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|   Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0                      |
|   https://github.com/NBISweden/AGAT                                          |
|   National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se         |
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                          ------ Start parsing ------                           
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
	* locus_tag
	* gene_id
=> merge_loci option deactivated
=> Machine information:
	This script is being run by perl v5.32.1
	Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
	Operating system being used: linux 
=> Accessing Ontology
	No ontology accessible from the gff file header!
	We use the SOFA ontology distributed with AGAT:
		/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
	Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
		4 root terms, and 2596 total terms, and 1516 leaf terms
	Filtering ontology:
		We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 10395
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 10395
=> Number of feature type (3rd column): 2
	* Level1: 0 => 
	* level2: 0 => 
	* level3: 2 => exon CDS
	* unknown: 0 => 
=>Check because only level3 features:
 * Number of feature with Parent attribute:0
 * Number of feature with a common attribute:10395
  => Some common attributes and some Parent attributes missing.
  /!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
  see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html 
  /!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote).  see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html 
  !! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
                  ------ End parsing (done in 2 second) ------                  


                           ------ Start checks ------                           
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------

------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------

-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created: 
CCDC169--SOHLH2	HAVANA	gene	1027	13795	.	+	.	FI_gene_label "CCDC169^ENSG00000242715.8"  ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8"  ; ccdsid "CCDS45028.1"  ; exon_id "ENSE00003461130.2"  ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8"  ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4"  ; havana_transcript "OTTHUMT00000368255.2"  ; hgnc_id "HGNC:34361"  ; level 2 ; orig_coord_info "chr13,36297637,36297719,-"  ; protein_id "ENSP00000239859.7"  ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8"  ; transcript_name "CCDC169-201"  ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2	HAVANA	mRNA	1027	13795	.	+	.	FI_gene_label "CCDC169^ENSG00000242715.8"  ; ID "CCDC169--SOHLH2^ENST00000239859.8"  ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8"  ; ccdsid "CCDS45028.1"  ; exon_id "ENSE00003461130.2"  ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8"  ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4"  ; havana_transcript "OTTHUMT00000368255.2"  ; hgnc_id "HGNC:34361"  ; level 2 ; orig_coord_info "chr13,36297637,36297719,-"  ; protein_id "ENSP00000239859.7"  ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8"  ; transcript_name "CCDC169-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
CCDC169--SOHLH2	HAVANA	gene	23170	30158	.	+	.	FI_gene_label "SOHLH2^ENSG00000120669.16"  ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16"  ; ccdsid "CCDS61309.1"  ; exon_id "ENSE00001482819.2"  ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16"  ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4"  ; havana_transcript "OTTHUMT00000368257.1"  ; hgnc_id "HGNC:26026"  ; level 1 ; orig_coord_info "chr13,36214479,36214526,-"  ; protein_id "ENSP00000326838.6"  ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6"  ; transcript_name "SOHLH2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2	HAVANA	mRNA	23170	30158	.	+	.	FI_gene_label "SOHLH2^ENSG00000120669.16"  ; ID "CCDC169--SOHLH2^ENST00000317764.6"  ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16"  ; ccdsid "CCDS61309.1"  ; exon_id "ENSE00001482819.2"  ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16"  ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4"  ; havana_transcript "OTTHUMT00000368257.1"  ; hgnc_id "HGNC:26026"  ; level 1 ; orig_coord_info "chr13,36214479,36214526,-"  ; protein_id "ENSP00000326838.6"  ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6"  ; transcript_name "SOHLH2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
CYP7B1--LINC01414	HAVANA	gene	1001	12920	.	+	.	FI_gene_label "CYP7B1^ENSG00000172817.4"  ; ID "CYP7B1--LINC01414^CYP7B1^ENSG00000172817.4"  ; ccdsid "CCDS6180.1"  ; exon_id "ENSE00001242915.3"  ; exon_number 1 ; gene_id "CYP7B1--LINC01414^CYP7B1^ENSG00000172817.4"  ; gene_name CYP7B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164387.3"  ; havana_transcript "OTTHUMT00000378550.2"  ; hgnc_id "HGNC:2652"  ; level 2 ; orig_coord_info "chr8,64798466,64798587,-"  ; protein_id "ENSP00000310721.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYP7B1--LINC01414^ENST00000310193.4"  ; transcript_name "CYP7B1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
CYP7B1--LINC01414	HAVANA	mRNA	1001	12920	.	+	.	FI_gene_label "CYP7B1^ENSG00000172817.4"  ; ID "CYP7B1--LINC01414^ENST00000310193.4"  ; Parent "CYP7B1--LINC01414^CYP7B1^ENSG00000172817.4"  ; ccdsid "CCDS6180.1"  ; exon_id "ENSE00001242915.3"  ; exon_number 1 ; gene_id "CYP7B1--LINC01414^CYP7B1^ENSG00000172817.4"  ; gene_name CYP7B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164387.3"  ; havana_transcript "OTTHUMT00000378550.2"  ; hgnc_id "HGNC:2652"  ; level 2 ; orig_coord_info "chr8,64798466,64798587,-"  ; protein_id "ENSP00000310721.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYP7B1--LINC01414^ENST00000310193.4"  ; transcript_name "CYP7B1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
EWSR1--FLI1	ENSEMBL	gene	27199	43894	.	+	.	FI_gene_label "FLI1^ENSG00000151702.17"  ; ID "EWSR1--FLI1^FLI1^ENSG00000151702.17"  ; ccdsid "CCDS59231.1"  ; exon_id "ENSE00001369506.4"  ; exon_number 3 ; gene_id "EWSR1--FLI1^FLI1^ENSG00000151702.17"  ; gene_name FLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165792.5"  ; hgnc_id "HGNC:3749"  ; level 3 ; orig_coord_info "chr11,128764790,128764821,+"  ; protein_id "ENSP00000281428.8"  ; tag basic CCDS ; transcript_id "EWSR1--FLI1^ENST00000281428.12"  ; transcript_name "FLI1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
EWSR1--FLI1	ENSEMBL	mRNA	27199	43894	.	+	.	FI_gene_label "FLI1^ENSG00000151702.17"  ; ID "EWSR1--FLI1^ENST00000281428.12"  ; Parent "EWSR1--FLI1^FLI1^ENSG00000151702.17"  ; ccdsid "CCDS59231.1"  ; exon_id "ENSE00001369506.4"  ; exon_number 3 ; gene_id "EWSR1--FLI1^FLI1^ENSG00000151702.17"  ; gene_name FLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165792.5"  ; hgnc_id "HGNC:3749"  ; level 3 ; orig_coord_info "chr11,128764790,128764821,+"  ; protein_id "ENSP00000281428.8"  ; tag basic CCDS ; transcript_id "EWSR1--FLI1^ENST00000281428.12"  ; transcript_name "FLI1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
EWSR1--FLI1	HAVANA	gene	1283	22097	.	+	.	FI_gene_label "EWSR1^ENSG00000182944.18"  ; ID "EWSR1--FLI1^EWSR1^ENSG00000182944.18"  ; exon_id "ENSE00001930494.1"  ; exon_number 1 ; gene_id "EWSR1--FLI1^EWSR1^ENSG00000182944.18"  ; gene_name EWSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151107.9"  ; havana_transcript "OTTHUMT00000321351.1"  ; hgnc_id "HGNC:3508"  ; level 2 ; orig_coord_info "chr22,29268337,29268349,+"  ; protein_id "ENSP00000330516.7"  ; tag not_organism_supported basic ; transcript_id "EWSR1--FLI1^ENST00000331029.11"  ; transcript_name "EWSR1-201"  ; transcript_support_level 5 ; transcript_type protein_coding
EWSR1--FLI1	HAVANA	mRNA	1283	22097	.	+	.	FI_gene_label "EWSR1^ENSG00000182944.18"  ; ID "EWSR1--FLI1^ENST00000331029.11"  ; Parent "EWSR1--FLI1^EWSR1^ENSG00000182944.18"  ; exon_id "ENSE00001930494.1"  ; exon_number 1 ; gene_id "EWSR1--FLI1^EWSR1^ENSG00000182944.18"  ; gene_name EWSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151107.9"  ; havana_transcript "OTTHUMT00000321351.1"  ; hgnc_id "HGNC:3508"  ; level 2 ; orig_coord_info "chr22,29268337,29268349,+"  ; protein_id "ENSP00000330516.7"  ; tag not_organism_supported basic ; transcript_id "EWSR1--FLI1^ENST00000331029.11"  ; transcript_name "EWSR1-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
IGH-@-ext--SPG7	HAVANA	gene	1301347	1343990	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "IGH-@-ext--SPG7^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "IGH-@-ext--SPG7^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "IGH-@-ext--SPG7^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
IGH-@-ext--SPG7	HAVANA	mRNA	1301347	1343990	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "IGH-@-ext--SPG7^ENST00000268704.7"  ; Parent "IGH-@-ext--SPG7^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "IGH-@-ext--SPG7^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "IGH-@-ext--SPG7^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
IGH@-ext--SPG7	HAVANA	gene	1301347	1343990	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "IGH@-ext--SPG7^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "IGH@-ext--SPG7^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "IGH@-ext--SPG7^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
IGH@-ext--SPG7	HAVANA	mRNA	1301347	1343990	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "IGH@-ext--SPG7^ENST00000268704.7"  ; Parent "IGH@-ext--SPG7^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "IGH@-ext--SPG7^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "IGH@-ext--SPG7^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
LINC00221--SPG7	HAVANA	gene	21635	64278	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "LINC00221--SPG7^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "LINC00221--SPG7^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "LINC00221--SPG7^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
LINC00221--SPG7	HAVANA	mRNA	21635	64278	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "LINC00221--SPG7^ENST00000268704.7"  ; Parent "LINC00221--SPG7^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "LINC00221--SPG7^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "LINC00221--SPG7^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
NPM1--MT-RNR2	HAVANA	gene	1734	14723	.	+	.	FI_gene_label "NPM1^ENSG00000181163.14"  ; ID "NPM1--MT-RNR2^NPM1^ENSG00000181163.14"  ; ccdsid "CCDS4376.1"  ; exon_id "ENSE00003906984.1"  ; exon_number 1 ; gene_id "NPM1--MT-RNR2^NPM1^ENSG00000181163.14"  ; gene_name NPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130465.4"  ; havana_transcript "OTTHUMT00000252858.2"  ; hgnc_id "HGNC:7910"  ; level 2 ; orig_coord_info "chr5,171387949,171388006,+"  ; protein_id "ENSP00000296930.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPM1--MT-RNR2^ENST00000296930.10"  ; transcript_name "NPM1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
NPM1--MT-RNR2	HAVANA	mRNA	1734	14723	.	+	.	FI_gene_label "NPM1^ENSG00000181163.14"  ; ID "NPM1--MT-RNR2^ENST00000296930.10"  ; Parent "NPM1--MT-RNR2^NPM1^ENSG00000181163.14"  ; ccdsid "CCDS4376.1"  ; exon_id "ENSE00003906984.1"  ; exon_number 1 ; gene_id "NPM1--MT-RNR2^NPM1^ENSG00000181163.14"  ; gene_name NPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130465.4"  ; havana_transcript "OTTHUMT00000252858.2"  ; hgnc_id "HGNC:7910"  ; level 2 ; orig_coord_info "chr5,171387949,171388006,+"  ; protein_id "ENSP00000296930.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPM1--MT-RNR2^ENST00000296930.10"  ; transcript_name "NPM1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHA13	HAVANA	gene	16359	24799	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13	HAVANA	mRNA	16359	24799	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA10--PCDHA13^ENST00000289272.3"  ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHA13	HAVANA	gene	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13	HAVANA	mRNA	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHA13^ENST00000562220.2"  ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC1	HAVANA	gene	16359	26374	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1	HAVANA	mRNA	16359	26374	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA10--PCDHAC1^ENST00000253807.3"  ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC1	HAVANA	gene	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1	HAVANA	mRNA	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC1^ENST00000562220.2"  ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC2	HAVANA	gene	16365	27100	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2	HAVANA	mRNA	16365	27100	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA10--PCDHAC2^ENST00000289269.7"  ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC2	HAVANA	gene	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2	HAVANA	mRNA	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC2^ENST00000562220.2"  ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHA13	HAVANA	gene	7419	15859	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13	HAVANA	mRNA	7419	15859	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA11--PCDHA13^ENST00000289272.3"  ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHA13	HAVANA	gene	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13	HAVANA	mRNA	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHA13^ENST00000616325.1"  ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC1	HAVANA	gene	7419	17434	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1	HAVANA	mRNA	7419	17434	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA11--PCDHAC1^ENST00000253807.3"  ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC1	HAVANA	gene	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1	HAVANA	mRNA	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC1^ENST00000616325.1"  ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC2	HAVANA	gene	7425	18160	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2	HAVANA	mRNA	7425	18160	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA11--PCDHAC2^ENST00000289269.7"  ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC2	HAVANA	gene	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2	HAVANA	mRNA	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC2^ENST00000616325.1"  ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA6--PCDHA13	HAVANA	gene	7268	15708	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13	HAVANA	mRNA	7268	15708	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA6--PCDHA13^ENST00000289272.3"  ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA6--PCDHA13	HAVANA	gene	1001	4267	.	+	.	FI_gene_label "PCDHA6^ENSG00000081842.18"  ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18"  ; exon_id "ENSE00001476364.4"  ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18"  ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5"  ; havana_transcript "OTTHUMT00000477550.1"  ; hgnc_id "HGNC:8672"  ; level 2 ; orig_coord_info "chr5,140828092,140830500,+"  ; protein_id "ENSP00000367366.4"  ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4"  ; transcript_name "PCDHA6-201"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13	HAVANA	mRNA	1001	4267	.	+	.	FI_gene_label "PCDHA6^ENSG00000081842.18"  ; ID "PCDHA6--PCDHA13^ENST00000378126.4"  ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18"  ; exon_id "ENSE00001476364.4"  ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18"  ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5"  ; havana_transcript "OTTHUMT00000477550.1"  ; hgnc_id "HGNC:8672"  ; level 2 ; orig_coord_info "chr5,140828092,140830500,+"  ; protein_id "ENSP00000367366.4"  ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4"  ; transcript_name "PCDHA6-201"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA6--PCDHAC1	HAVANA	gene	7268	17283	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1	HAVANA	mRNA	7268	17283	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA6--PCDHAC1^ENST00000253807.3"  ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA6--PCDHAC1	HAVANA	gene	1001	4267	.	+	.	FI_gene_label "PCDHA6^ENSG00000081842.18"  ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18"  ; exon_id "ENSE00001476364.4"  ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18"  ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5"  ; havana_transcript "OTTHUMT00000477550.1"  ; hgnc_id "HGNC:8672"  ; level 2 ; orig_coord_info "chr5,140828092,140830500,+"  ; protein_id "ENSP00000367366.4"  ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4"  ; transcript_name "PCDHA6-201"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1	HAVANA	mRNA	1001	4267	.	+	.	FI_gene_label "PCDHA6^ENSG00000081842.18"  ; ID "PCDHA6--PCDHAC1^ENST00000378126.4"  ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18"  ; exon_id "ENSE00001476364.4"  ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18"  ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5"  ; havana_transcript "OTTHUMT00000477550.1"  ; hgnc_id "HGNC:8672"  ; level 2 ; orig_coord_info "chr5,140828092,140830500,+"  ; protein_id "ENSP00000367366.4"  ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4"  ; transcript_name "PCDHA6-201"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA6--PCDHAC2	HAVANA	gene	7274	18009	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2	HAVANA	mRNA	7274	18009	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA6--PCDHAC2^ENST00000289269.7"  ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA6--PCDHAC2	HAVANA	gene	1001	4267	.	+	.	FI_gene_label "PCDHA6^ENSG00000081842.18"  ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18"  ; exon_id "ENSE00001476364.4"  ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18"  ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5"  ; havana_transcript "OTTHUMT00000477550.1"  ; hgnc_id "HGNC:8672"  ; level 2 ; orig_coord_info "chr5,140828092,140830500,+"  ; protein_id "ENSP00000367366.4"  ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4"  ; transcript_name "PCDHA6-201"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2	HAVANA	mRNA	1001	4267	.	+	.	FI_gene_label "PCDHA6^ENSG00000081842.18"  ; ID "PCDHA6--PCDHAC2^ENST00000378126.4"  ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18"  ; exon_id "ENSE00001476364.4"  ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18"  ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5"  ; havana_transcript "OTTHUMT00000477550.1"  ; hgnc_id "HGNC:8672"  ; level 2 ; orig_coord_info "chr5,140828092,140830500,+"  ; protein_id "ENSP00000367366.4"  ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4"  ; transcript_name "PCDHA6-201"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA8--PCDHA10	HAVANA	gene	1001	3616	.	+	.	FI_gene_label "PCDHA8^ENSG00000204962.6"  ; ID "PCDHA8--PCDHA10^PCDHA8^ENSG00000204962.6"  ; exon_id "ENSE00001476361.4"  ; exon_number 1 ; gene_id "PCDHA8--PCDHA10^PCDHA8^ENSG00000204962.6"  ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4"  ; havana_transcript "OTTHUMT00000477552.1"  ; hgnc_id "HGNC:8674"  ; level 2 ; orig_coord_info "chr5,140841322,140843763,+"  ; protein_id "ENSP00000367363.3"  ; tag basic ; transcript_id "PCDHA8--PCDHA10^ENST00000378123.4"  ; transcript_name "PCDHA8-201"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA8--PCDHA10	HAVANA	mRNA	1001	3616	.	+	.	FI_gene_label "PCDHA8^ENSG00000204962.6"  ; ID "PCDHA8--PCDHA10^ENST00000378123.4"  ; Parent "PCDHA8--PCDHA10^PCDHA8^ENSG00000204962.6"  ; exon_id "ENSE00001476361.4"  ; exon_number 1 ; gene_id "PCDHA8--PCDHA10^PCDHA8^ENSG00000204962.6"  ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4"  ; havana_transcript "OTTHUMT00000477552.1"  ; hgnc_id "HGNC:8674"  ; level 2 ; orig_coord_info "chr5,140841322,140843763,+"  ; protein_id "ENSP00000367363.3"  ; tag basic ; transcript_id "PCDHA8--PCDHA10^ENST00000378123.4"  ; transcript_name "PCDHA8-201"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA8--PCDHA10	HAVANA	gene	6617	18974	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA8--PCDHA10^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA8--PCDHA10^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA8--PCDHA10^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA8--PCDHA10	HAVANA	mRNA	6617	18974	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA8--PCDHA10^ENST00000562220.2"  ; Parent "PCDHA8--PCDHA10^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA8--PCDHA10^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA8--PCDHA10^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA10	HAVANA	gene	9840	19293	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA10	HAVANA	mRNA	9840	19293	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGA6--PCDHGA10^ENST00000398610.2"  ; Parent "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA10	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA10	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA10^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA11	HAVANA	gene	9655	18460	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA11	HAVANA	mRNA	9655	18460	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGA6--PCDHGA11^ENST00000398587.7"  ; Parent "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA11	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA11	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA11^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA12	HAVANA	gene	9651	17543	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA12	HAVANA	mRNA	9651	17543	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGA6--PCDHGA12^ENST00000252085.4"  ; Parent "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA12	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA12	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA12^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA8	HAVANA	gene	12127	21307	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA8	HAVANA	mRNA	12127	21307	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGA6--PCDHGA8^ENST00000398604.3"  ; Parent "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA8	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA8	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA8^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA9	HAVANA	gene	9672	17399	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA9	HAVANA	mRNA	9672	17399	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGA6--PCDHGA9^ENST00000573521.1"  ; Parent "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGA9	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA9	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGA9^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGB6	HAVANA	gene	9833	19432	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB6	HAVANA	mRNA	9833	19432	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGA6--PCDHGB6^ENST00000520790.1"  ; Parent "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGB6	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB6	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGB6^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGB7	HAVANA	gene	9683	17612	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB7	HAVANA	mRNA	9683	17612	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGA6--PCDHGB7^ENST00000398594.4"  ; Parent "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGB7	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB7	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGB7^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGC3	HAVANA	gene	9670	19856	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC3	HAVANA	mRNA	9670	19856	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGA6--PCDHGC3^ENST00000308177.5"  ; Parent "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGC3	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC3	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGC3^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGC4	HAVANA	gene	9828	17624	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC4	HAVANA	mRNA	9828	17624	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGA6--PCDHGC4^ENST00000306593.1"  ; Parent "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGC4	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC4	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGC4^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGC5	HAVANA	gene	9651	17676	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC5	HAVANA	mRNA	9651	17676	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGA6--PCDHGC5^ENST00000252087.3"  ; Parent "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGA6--PCDHGC5	HAVANA	gene	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC5	HAVANA	mRNA	1001	6650	.	+	.	FI_gene_label "PCDHGA6^ENSG00000253731.3"  ; ID "PCDHGA6--PCDHGC5^ENST00000610583.1"  ; Parent "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3"  ; ccdsid "CCDS75335.1"  ; exon_id "ENSE00003746318.1"  ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3"  ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2"  ; havana_transcript "OTTHUMT00000476688.1"  ; hgnc_id "HGNC:8704"  ; level 2 ; orig_coord_info "chr5,141374084,141376537,+"  ; protein_id "ENSP00000479478.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1"  ; transcript_name "PCDHGA6-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA10	HAVANA	gene	6778	16231	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10	HAVANA	mRNA	6778	16231	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA10	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA11	HAVANA	gene	6593	15398	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11	HAVANA	mRNA	6593	15398	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA11	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA12	HAVANA	gene	6589	14481	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12	HAVANA	mRNA	6589	14481	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA12	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA8	HAVANA	gene	9065	18245	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8	HAVANA	mRNA	9065	18245	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA8	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA9	HAVANA	gene	6610	14337	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9	HAVANA	mRNA	6610	14337	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA9	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB6	HAVANA	gene	6771	16370	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6	HAVANA	mRNA	6771	16370	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB6	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB7	HAVANA	gene	6621	14550	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7	HAVANA	mRNA	6621	14550	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB7	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC3	HAVANA	gene	6608	16794	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3	HAVANA	mRNA	6608	16794	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC3	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC4	HAVANA	gene	6766	14562	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4	HAVANA	mRNA	6766	14562	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC4	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC5	HAVANA	gene	6589	14614	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5	HAVANA	mRNA	6589	14614	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC5	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
RBM14--RBM4	HAVANA	gene	15043	21268	.	+	.	FI_gene_label "RBM4^ENSG00000173933.21"  ; ID "RBM14--RBM4^RBM4^ENSG00000173933.21"  ; ccdsid "CCDS41676.1"  ; exon_id "ENSE00003513724.1"  ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21"  ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7"  ; havana_transcript "OTTHUMT00000334210.2"  ; hgnc_id "HGNC:9901"  ; level 2 ; orig_coord_info "chr11,66639712,66640123,+"  ; protein_id "ENSP00000309166.8"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12"  ; transcript_name "RBM4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4	HAVANA	mRNA	15043	21268	.	+	.	FI_gene_label "RBM4^ENSG00000173933.21"  ; ID "RBM14--RBM4^ENST00000310092.12"  ; Parent "RBM14--RBM4^RBM4^ENSG00000173933.21"  ; ccdsid "CCDS41676.1"  ; exon_id "ENSE00003513724.1"  ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21"  ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7"  ; havana_transcript "OTTHUMT00000334210.2"  ; hgnc_id "HGNC:9901"  ; level 2 ; orig_coord_info "chr11,66639712,66640123,+"  ; protein_id "ENSP00000309166.8"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12"  ; transcript_name "RBM4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
RBM14--RBM4	HAVANA	gene	1005	12006	.	+	.	FI_gene_label "RBM14^ENSG00000239306.5"  ; ID "RBM14--RBM4^RBM14^ENSG00000239306.5"  ; ccdsid "CCDS8147.1"  ; exon_id "ENSE00003902856.1"  ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5"  ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5"  ; havana_transcript "OTTHUMT00000277128.1"  ; hgnc_id "HGNC:14219"  ; level 2 ; orig_coord_info "chr11,66616721,66617057,+"  ; protein_id "ENSP00000311747.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5"  ; transcript_name "RBM14-201"  ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4	HAVANA	mRNA	1005	12006	.	+	.	FI_gene_label "RBM14^ENSG00000239306.5"  ; ID "RBM14--RBM4^ENST00000310137.5"  ; Parent "RBM14--RBM4^RBM14^ENSG00000239306.5"  ; ccdsid "CCDS8147.1"  ; exon_id "ENSE00003902856.1"  ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5"  ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5"  ; havana_transcript "OTTHUMT00000277128.1"  ; hgnc_id "HGNC:14219"  ; level 2 ; orig_coord_info "chr11,66616721,66617057,+"  ; protein_id "ENSP00000311747.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5"  ; transcript_name "RBM14-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
SELENOOLP--HOOK1	HAVANA	gene	15079	41028	.	+	.	FI_gene_label "HOOK1^ENSG00000134709.12"  ; ID "SELENOOLP--HOOK1^HOOK1^ENSG00000134709.12"  ; ccdsid "CCDS612.1"  ; exon_id "ENSE00001454623.2"  ; exon_number 1 ; gene_id "SELENOOLP--HOOK1^HOOK1^ENSG00000134709.12"  ; gene_name HOOK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008990.4"  ; havana_transcript "OTTHUMT00000024934.3"  ; hgnc_id "HGNC:19884"  ; level 2 ; orig_coord_info "chr1,59815118,59815180,+"  ; protein_id "ENSP00000360252.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SELENOOLP--HOOK1^ENST00000371208.5"  ; transcript_name "HOOK1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
SELENOOLP--HOOK1	HAVANA	mRNA	15079	41028	.	+	.	FI_gene_label "HOOK1^ENSG00000134709.12"  ; ID "SELENOOLP--HOOK1^ENST00000371208.5"  ; Parent "SELENOOLP--HOOK1^HOOK1^ENSG00000134709.12"  ; ccdsid "CCDS612.1"  ; exon_id "ENSE00001454623.2"  ; exon_number 1 ; gene_id "SELENOOLP--HOOK1^HOOK1^ENSG00000134709.12"  ; gene_name HOOK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008990.4"  ; havana_transcript "OTTHUMT00000024934.3"  ; hgnc_id "HGNC:19884"  ; level 2 ; orig_coord_info "chr1,59815118,59815180,+"  ; protein_id "ENSP00000360252.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SELENOOLP--HOOK1^ENST00000371208.5"  ; transcript_name "HOOK1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
SMURF2P1--SP2	HAVANA	gene	8392	21038	.	+	.	FI_gene_label "SP2^ENSG00000167182.15"  ; ID "SMURF2P1--SP2^SP2^ENSG00000167182.15"  ; ccdsid "CCDS11521.2"  ; exon_id "ENSE00002729406.2"  ; exon_number 1 ; gene_id "SMURF2P1--SP2^SP2^ENSG00000167182.15"  ; gene_name SP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150196.4"  ; havana_transcript "OTTHUMT00000316777.3"  ; hgnc_id "HGNC:11207"  ; level 2 ; orig_coord_info "chr17,47896287,47896293,+"  ; protein_id "ENSP00000365931.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMURF2P1--SP2^ENST00000376741.5"  ; transcript_name "SP2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
SMURF2P1--SP2	HAVANA	mRNA	8392	21038	.	+	.	FI_gene_label "SP2^ENSG00000167182.15"  ; ID "SMURF2P1--SP2^ENST00000376741.5"  ; Parent "SMURF2P1--SP2^SP2^ENSG00000167182.15"  ; ccdsid "CCDS11521.2"  ; exon_id "ENSE00002729406.2"  ; exon_number 1 ; gene_id "SMURF2P1--SP2^SP2^ENSG00000167182.15"  ; gene_name SP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150196.4"  ; havana_transcript "OTTHUMT00000316777.3"  ; hgnc_id "HGNC:11207"  ; level 2 ; orig_coord_info "chr17,47896287,47896293,+"  ; protein_id "ENSP00000365931.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMURF2P1--SP2^ENST00000376741.5"  ; transcript_name "SP2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
SOGA3--KIAA0408	HAVANA	gene	20137	25049	.	+	.	FI_gene_label "KIAA0408^ENSG00000189367.15"  ; ID "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15"  ; exon_id "ENSE00001831610.2"  ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15"  ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4"  ; havana_transcript "OTTHUMT00000042140.2"  ; hgnc_id "HGNC:21636"  ; level 1 ; orig_coord_info "chr6,127446872,127447085,-"  ; protein_id "ENSP00000436178.1"  ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2"  ; transcript_name "KIAA0408-202"  ; transcript_support_level 2 ; transcript_type protein_coding
SOGA3--KIAA0408	HAVANA	mRNA	20137	25049	.	+	.	FI_gene_label "KIAA0408^ENSG00000189367.15"  ; ID "SOGA3--KIAA0408^ENST00000465254.2"  ; Parent "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15"  ; exon_id "ENSE00001831610.2"  ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15"  ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4"  ; havana_transcript "OTTHUMT00000042140.2"  ; hgnc_id "HGNC:21636"  ; level 1 ; orig_coord_info "chr6,127446872,127447085,-"  ; protein_id "ENSP00000436178.1"  ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2"  ; transcript_name "KIAA0408-202"  ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created: 
SOGA3--KIAA0408	HAVANA	gene	1301	11362	.	+	.	FI_gene_label "SOGA3^ENSG00000214338.10"  ; ID "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10"  ; exon_id "ENSE00003609368.1"  ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10"  ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2"  ; havana_transcript "OTTHUMT00000388286.1"  ; hgnc_id "HGNC:21494"  ; level 2 ; orig_coord_info "chr6,127515514,127516614,-"  ; protein_id "ENSP00000435559.1"  ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2"  ; transcript_name "SOGA3-201"  ; transcript_support_level 5 ; transcript_type protein_coding
SOGA3--KIAA0408	HAVANA	mRNA	1301	11362	.	+	.	FI_gene_label "SOGA3^ENSG00000214338.10"  ; ID "SOGA3--KIAA0408^ENST00000465909.2"  ; Parent "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10"  ; exon_id "ENSE00003609368.1"  ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10"  ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2"  ; havana_transcript "OTTHUMT00000388286.1"  ; hgnc_id "HGNC:21494"  ; level 2 ; orig_coord_info "chr6,127515514,127516614,-"  ; protein_id "ENSP00000435559.1"  ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2"  ; transcript_name "SOGA3-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
SPG7--AC092957.1	HAVANA	gene	7006	49649	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "SPG7--AC092957.1^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "SPG7--AC092957.1^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "SPG7--AC092957.1^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
SPG7--AC092957.1	HAVANA	mRNA	7006	49649	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "SPG7--AC092957.1^ENST00000268704.7"  ; Parent "SPG7--AC092957.1^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "SPG7--AC092957.1^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "SPG7--AC092957.1^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
SPG7--PLSCR5	HAVANA	gene	7006	49649	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "SPG7--PLSCR5^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "SPG7--PLSCR5^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "SPG7--PLSCR5^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
SPG7--PLSCR5	HAVANA	mRNA	7006	49649	.	+	.	FI_gene_label "SPG7^ENSG00000197912.16"  ; ID "SPG7--PLSCR5^ENST00000268704.7"  ; Parent "SPG7--PLSCR5^SPG7^ENSG00000197912.16"  ; exon_id "ENSE00000946159.6"  ; exon_number 1 ; gene_id "SPG7--PLSCR5^SPG7^ENSG00000197912.16"  ; gene_name SPG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138046.19"  ; havana_transcript "OTTHUMT00000495858.2"  ; hgnc_id "HGNC:11237"  ; level 2 ; orig_coord_info "chr16,89508418,89508600,+"  ; protein_id "ENSP00000268704.3"  ; tag RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "SPG7--PLSCR5^ENST00000268704.7"  ; transcript_name "SPG7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
SPG7--PLSCR5	HAVANA	gene	52672	59758	.	+	.	FI_gene_label "PLSCR5^ENSG00000231213.7"  ; ID "SPG7--PLSCR5^PLSCR5^ENSG00000231213.7"  ; ccdsid "CCDS46931.1"  ; exon_id "ENSE00001621141.2"  ; exon_number 1 ; gene_id "SPG7--PLSCR5^PLSCR5^ENSG00000231213.7"  ; gene_name PLSCR5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159437.1"  ; havana_transcript "OTTHUMT00000355365.1"  ; hgnc_id "HGNC:19952"  ; level 2 ; orig_coord_info "chr3,146605200,146605212,-"  ; protein_id "ENSP00000390111.1"  ; tag alternative_3_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPG7--PLSCR5^ENST00000443512.2"  ; transcript_name "PLSCR5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
SPG7--PLSCR5	HAVANA	mRNA	52672	59758	.	+	.	FI_gene_label "PLSCR5^ENSG00000231213.7"  ; ID "SPG7--PLSCR5^ENST00000443512.2"  ; Parent "SPG7--PLSCR5^PLSCR5^ENSG00000231213.7"  ; ccdsid "CCDS46931.1"  ; exon_id "ENSE00001621141.2"  ; exon_number 1 ; gene_id "SPG7--PLSCR5^PLSCR5^ENSG00000231213.7"  ; gene_name PLSCR5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159437.1"  ; havana_transcript "OTTHUMT00000355365.1"  ; hgnc_id "HGNC:19952"  ; level 2 ; orig_coord_info "chr3,146605200,146605212,-"  ; protein_id "ENSP00000390111.1"  ; tag alternative_3_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPG7--PLSCR5^ENST00000443512.2"  ; transcript_name "PLSCR5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
SUCLA2--AL158828.1	HAVANA	gene	3474	16751	.	+	.	FI_gene_label "SUCLA2^ENSG00000136143.16"  ; ID "SUCLA2--AL158828.1^SUCLA2^ENSG00000136143.16"  ; exon_id "ENSE00003787881.1"  ; exon_number 1 ; gene_id "SUCLA2--AL158828.1^SUCLA2^ENSG00000136143.16"  ; gene_name SUCLA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016889.14"  ; havana_transcript "OTTHUMT00000044860.3"  ; hgnc_id "HGNC:11448"  ; level 2 ; orig_coord_info "chr13,48001180,48001269,-"  ; protein_id "ENSP00000415091.1"  ; tag mRNA_end_NF cds_end_NF ; transcript_id "SUCLA2--AL158828.1^ENST00000433022.1"  ; transcript_name "SUCLA2-201"  ; transcript_support_level 5 ; transcript_type protein_coding
SUCLA2--AL158828.1	HAVANA	mRNA	3474	16751	.	+	.	FI_gene_label "SUCLA2^ENSG00000136143.16"  ; ID "SUCLA2--AL158828.1^ENST00000433022.1"  ; Parent "SUCLA2--AL158828.1^SUCLA2^ENSG00000136143.16"  ; exon_id "ENSE00003787881.1"  ; exon_number 1 ; gene_id "SUCLA2--AL158828.1^SUCLA2^ENSG00000136143.16"  ; gene_name SUCLA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016889.14"  ; havana_transcript "OTTHUMT00000044860.3"  ; hgnc_id "HGNC:11448"  ; level 2 ; orig_coord_info "chr13,48001180,48001269,-"  ; protein_id "ENSP00000415091.1"  ; tag mRNA_end_NF cds_end_NF ; transcript_id "SUCLA2--AL158828.1^ENST00000433022.1"  ; transcript_name "SUCLA2-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
SUCLA2--AL353613.1	HAVANA	gene	3474	16751	.	+	.	FI_gene_label "SUCLA2^ENSG00000136143.16"  ; ID "SUCLA2--AL353613.1^SUCLA2^ENSG00000136143.16"  ; exon_id "ENSE00003787881.1"  ; exon_number 1 ; gene_id "SUCLA2--AL353613.1^SUCLA2^ENSG00000136143.16"  ; gene_name SUCLA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016889.14"  ; havana_transcript "OTTHUMT00000044860.3"  ; hgnc_id "HGNC:11448"  ; level 2 ; orig_coord_info "chr13,48001180,48001269,-"  ; protein_id "ENSP00000415091.1"  ; tag mRNA_end_NF cds_end_NF ; transcript_id "SUCLA2--AL353613.1^ENST00000433022.1"  ; transcript_name "SUCLA2-201"  ; transcript_support_level 5 ; transcript_type protein_coding
SUCLA2--AL353613.1	HAVANA	mRNA	3474	16751	.	+	.	FI_gene_label "SUCLA2^ENSG00000136143.16"  ; ID "SUCLA2--AL353613.1^ENST00000433022.1"  ; Parent "SUCLA2--AL353613.1^SUCLA2^ENSG00000136143.16"  ; exon_id "ENSE00003787881.1"  ; exon_number 1 ; gene_id "SUCLA2--AL353613.1^SUCLA2^ENSG00000136143.16"  ; gene_name SUCLA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016889.14"  ; havana_transcript "OTTHUMT00000044860.3"  ; hgnc_id "HGNC:11448"  ; level 2 ; orig_coord_info "chr13,48001180,48001269,-"  ; protein_id "ENSP00000415091.1"  ; tag mRNA_end_NF cds_end_NF ; transcript_id "SUCLA2--AL353613.1^ENST00000433022.1"  ; transcript_name "SUCLA2-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
SUPT20H--CHRDL2	HAVANA	gene	34318	47571	.	+	.	FI_gene_label "CHRDL2^ENSG00000054938.16"  ; ID "SUPT20H--CHRDL2^CHRDL2^ENSG00000054938.16"  ; ccdsid "CCDS8234.1"  ; exon_id "ENSE00002182094.1"  ; exon_number 1 ; gene_id "SUPT20H--CHRDL2^CHRDL2^ENSG00000054938.16"  ; gene_name CHRDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165623.1"  ; havana_transcript "OTTHUMT00000385390.1"  ; hgnc_id "HGNC:24168"  ; level 2 ; orig_coord_info "chr11,74730807,74730888,-"  ; protein_id "ENSP00000263671.5"  ; tag basic CCDS ; transcript_id "SUPT20H--CHRDL2^ENST00000263671.9"  ; transcript_name "CHRDL2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
SUPT20H--CHRDL2	HAVANA	mRNA	34318	47571	.	+	.	FI_gene_label "CHRDL2^ENSG00000054938.16"  ; ID "SUPT20H--CHRDL2^ENST00000263671.9"  ; Parent "SUPT20H--CHRDL2^CHRDL2^ENSG00000054938.16"  ; ccdsid "CCDS8234.1"  ; exon_id "ENSE00002182094.1"  ; exon_number 1 ; gene_id "SUPT20H--CHRDL2^CHRDL2^ENSG00000054938.16"  ; gene_name CHRDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165623.1"  ; havana_transcript "OTTHUMT00000385390.1"  ; hgnc_id "HGNC:24168"  ; level 2 ; orig_coord_info "chr11,74730807,74730888,-"  ; protein_id "ENSP00000263671.5"  ; tag basic CCDS ; transcript_id "SUPT20H--CHRDL2^ENST00000263671.9"  ; transcript_name "CHRDL2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
SUPT20H--CHRDL2	HAVANA	gene	1026	31066	.	+	.	FI_gene_label "SUPT20H^ENSG00000102710.20"  ; ID "SUPT20H--CHRDL2^SUPT20H^ENSG00000102710.20"  ; ccdsid "CCDS31959.1"  ; exon_id "ENSE00003606180.1"  ; exon_number 2 ; gene_id "SUPT20H--CHRDL2^SUPT20H^ENSG00000102710.20"  ; gene_name SUPT20H ; gene_type protein_coding ; havana_gene "OTTHUMG00000016747.6"  ; havana_transcript "OTTHUMT00000354766.2"  ; hgnc_id "HGNC:20596"  ; level 2 ; orig_coord_info "chr13,37051488,37051490,-"  ; protein_id "ENSP00000218894.10"  ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SUPT20H--CHRDL2^ENST00000350612.11"  ; transcript_name "SUPT20H-201"  ; transcript_support_level 1 ; transcript_type protein_coding
SUPT20H--CHRDL2	HAVANA	mRNA	1026	31066	.	+	.	FI_gene_label "SUPT20H^ENSG00000102710.20"  ; ID "SUPT20H--CHRDL2^ENST00000350612.11"  ; Parent "SUPT20H--CHRDL2^SUPT20H^ENSG00000102710.20"  ; ccdsid "CCDS31959.1"  ; exon_id "ENSE00003606180.1"  ; exon_number 2 ; gene_id "SUPT20H--CHRDL2^SUPT20H^ENSG00000102710.20"  ; gene_name SUPT20H ; gene_type protein_coding ; havana_gene "OTTHUMG00000016747.6"  ; havana_transcript "OTTHUMT00000354766.2"  ; hgnc_id "HGNC:20596"  ; level 2 ; orig_coord_info "chr13,37051488,37051490,-"  ; protein_id "ENSP00000218894.10"  ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SUPT20H--CHRDL2^ENST00000350612.11"  ; transcript_name "SUPT20H-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TLK2--AC240565.1	HAVANA	gene	4784	35054	.	+	.	FI_gene_label "TLK2^ENSG00000146872.18"  ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; ccdsid "CCDS62283.1"  ; exon_id "ENSE00003568961.1"  ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3"  ; havana_transcript "OTTHUMT00000445140.1"  ; hgnc_id "HGNC:11842"  ; level 2 ; orig_coord_info "chr17,62481126,62481206,+"  ; protein_id "ENSP00000316512.9"  ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13"  ; transcript_name "TLK2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1	HAVANA	mRNA	4784	35054	.	+	.	FI_gene_label "TLK2^ENSG00000146872.18"  ; ID "TLK2--AC240565.1^ENST00000326270.13"  ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; ccdsid "CCDS62283.1"  ; exon_id "ENSE00003568961.1"  ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3"  ; havana_transcript "OTTHUMT00000445140.1"  ; hgnc_id "HGNC:11842"  ; level 2 ; orig_coord_info "chr17,62481126,62481206,+"  ; protein_id "ENSP00000316512.9"  ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13"  ; transcript_name "TLK2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TMEM132B--TDG	HAVANA	gene	30390	41107	.	+	.	FI_gene_label "TDG^ENSG00000139372.15"  ; ID "TMEM132B--TDG^TDG^ENSG00000139372.15"  ; exon_id "ENSE00002286316.1"  ; exon_number 2 ; gene_id "TMEM132B--TDG^TDG^ENSG00000139372.15"  ; gene_name TDG ; gene_type protein_coding ; havana_gene "OTTHUMG00000168418.4"  ; havana_transcript "OTTHUMT00000399676.1"  ; hgnc_id "HGNC:11700"  ; level 1 ; orig_coord_info "chr12,103973023,103973033,+"  ; protein_id "ENSP00000266775.9"  ; tag basic appris_alternative_2 exp_conf ; transcript_id "TMEM132B--TDG^ENST00000266775.13"  ; transcript_name "TDG-201"  ; transcript_support_level 1 ; transcript_type protein_coding
TMEM132B--TDG	HAVANA	mRNA	30390	41107	.	+	.	FI_gene_label "TDG^ENSG00000139372.15"  ; ID "TMEM132B--TDG^ENST00000266775.13"  ; Parent "TMEM132B--TDG^TDG^ENSG00000139372.15"  ; exon_id "ENSE00002286316.1"  ; exon_number 2 ; gene_id "TMEM132B--TDG^TDG^ENSG00000139372.15"  ; gene_name TDG ; gene_type protein_coding ; havana_gene "OTTHUMG00000168418.4"  ; havana_transcript "OTTHUMT00000399676.1"  ; hgnc_id "HGNC:11700"  ; level 1 ; orig_coord_info "chr12,103973023,103973033,+"  ; protein_id "ENSP00000266775.9"  ; tag basic appris_alternative_2 exp_conf ; transcript_id "TMEM132B--TDG^ENST00000266775.13"  ; transcript_name "TDG-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TMEM132B--TDG	HAVANA	gene	2097	27360	.	+	.	FI_gene_label "TMEM132B^ENSG00000139364.10"  ; ID "TMEM132B--TDG^TMEM132B^ENSG00000139364.10"  ; ccdsid "CCDS41859.1"  ; exon_id "ENSE00001528357.1"  ; exon_number 1 ; gene_id "TMEM132B--TDG^TMEM132B^ENSG00000139364.10"  ; gene_name TMEM132B ; gene_type protein_coding ; havana_gene "OTTHUMG00000168520.2"  ; havana_transcript "OTTHUMT00000400043.1"  ; hgnc_id "HGNC:29397"  ; level 2 ; orig_coord_info "chr12,125326624,125326675,+"  ; protein_id "ENSP00000299308.3"  ; tag basic appris_principal_1 CCDS ; transcript_id "TMEM132B--TDG^ENST00000299308.7"  ; transcript_name "TMEM132B-201"  ; transcript_support_level 5 ; transcript_type protein_coding
TMEM132B--TDG	HAVANA	mRNA	2097	27360	.	+	.	FI_gene_label "TMEM132B^ENSG00000139364.10"  ; ID "TMEM132B--TDG^ENST00000299308.7"  ; Parent "TMEM132B--TDG^TMEM132B^ENSG00000139364.10"  ; ccdsid "CCDS41859.1"  ; exon_id "ENSE00001528357.1"  ; exon_number 1 ; gene_id "TMEM132B--TDG^TMEM132B^ENSG00000139364.10"  ; gene_name TMEM132B ; gene_type protein_coding ; havana_gene "OTTHUMG00000168520.2"  ; havana_transcript "OTTHUMT00000400043.1"  ; hgnc_id "HGNC:29397"  ; level 2 ; orig_coord_info "chr12,125326624,125326675,+"  ; protein_id "ENSP00000299308.3"  ; tag basic appris_principal_1 CCDS ; transcript_id "TMEM132B--TDG^ENST00000299308.7"  ; transcript_name "TMEM132B-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
CYP7B1--LINC01414	HAVANA	gene	21092	24716	.	+	.	FI_gene_label "LINC01414^ENSG00000253554.7"  ; ID "CYP7B1--LINC01414^LINC01414^ENSG00000253554.7"  ; exon_id "ENSE00002124734.1"  ; exon_number 1 ; gene_id "CYP7B1--LINC01414^LINC01414^ENSG00000253554.7"  ; gene_name LINC01414 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164358.6"  ; havana_transcript "OTTHUMT00000378632.1"  ; hgnc_id "HGNC:50707"  ; level 2 ; orig_coord_info "chr8,64239834,64240282,-"  ; transcript_id "CYP7B1--LINC01414^ENST00000520365.1"  ; transcript_name "LINC01414-201"  ; transcript_support_level 4 ; transcript_type lncRNA
CYP7B1--LINC01414	HAVANA	RNA	21092	24716	.	+	.	FI_gene_label "LINC01414^ENSG00000253554.7"  ; ID "CYP7B1--LINC01414^ENST00000520365.1"  ; Parent "CYP7B1--LINC01414^LINC01414^ENSG00000253554.7"  ; exon_id "ENSE00002124734.1"  ; exon_number 1 ; gene_id "CYP7B1--LINC01414^LINC01414^ENSG00000253554.7"  ; gene_name LINC01414 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164358.6"  ; havana_transcript "OTTHUMT00000378632.1"  ; hgnc_id "HGNC:50707"  ; level 2 ; orig_coord_info "chr8,64239834,64240282,-"  ; transcript_id "CYP7B1--LINC01414^ENST00000520365.1"  ; transcript_name "LINC01414-201"  ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created: 
IGH-@-ext--SPG7	SuperLocus-ext	gene	1001	1292341	.	+	.	FI_gene_label "IGH-@-ext^IGH-.g@-ext"  ; ID "IGH-@-ext--SPG7^IGH-@-ext^IGH-.g@-ext"  ; gene_id "IGH-@-ext--SPG7^IGH-@-ext^IGH-.g@-ext"  ; gene_name "IGH-@-ext"  ; orig_coord_info "chr14,105583731,106875071,+"  ; transcript_id "IGH-@-ext--SPG7^IGH-.t@-ext" 
IGH-@-ext--SPG7	SuperLocus-ext	RNA	1001	1292341	.	+	.	FI_gene_label "IGH-@-ext^IGH-.g@-ext"  ; ID "IGH-@-ext--SPG7^IGH-.t@-ext"  ; Parent "IGH-@-ext--SPG7^IGH-@-ext^IGH-.g@-ext"  ; gene_id "IGH-@-ext--SPG7^IGH-@-ext^IGH-.g@-ext"  ; gene_name "IGH-@-ext"  ; orig_coord_info "chr14,105583731,106875071,+"  ; transcript_id "IGH-@-ext--SPG7^IGH-.t@-ext" 
L1 and L2 created: 
IGH@-ext--SPG7	SuperLocus-ext	gene	1001	1292341	.	+	.	FI_gene_label "IGH@-ext^IGH.g@-ext"  ; ID "IGH@-ext--SPG7^IGH@-ext^IGH.g@-ext"  ; gene_id "IGH@-ext--SPG7^IGH@-ext^IGH.g@-ext"  ; gene_name "IGH@-ext"  ; orig_coord_info "chr14,105583731,106875071,-"  ; transcript_id "IGH@-ext--SPG7^IGH.t@-ext" 
IGH@-ext--SPG7	SuperLocus-ext	RNA	1001	1292341	.	+	.	FI_gene_label "IGH@-ext^IGH.g@-ext"  ; ID "IGH@-ext--SPG7^IGH.t@-ext"  ; Parent "IGH@-ext--SPG7^IGH@-ext^IGH.g@-ext"  ; gene_id "IGH@-ext--SPG7^IGH@-ext^IGH.g@-ext"  ; gene_name "IGH@-ext"  ; orig_coord_info "chr14,105583731,106875071,-"  ; transcript_id "IGH@-ext--SPG7^IGH.t@-ext" 
L1 and L2 created: 
LINC00221--SPG7	HAVANA	gene	1001	6660	.	+	.	FI_gene_label "LINC00221^ENSG00000270816.6"  ; ID "LINC00221--SPG7^LINC00221^ENSG00000270816.6"  ; exon_id "ENSE00003747900.2"  ; exon_number 1 ; gene_id "LINC00221--SPG7^LINC00221^ENSG00000270816.6"  ; gene_name LINC00221 ; gene_type lncRNA ; havana_gene "OTTHUMG00000152084.5"  ; havana_transcript "OTTHUMT00000325180.3"  ; hgnc_id "HGNC:20169"  ; level 2 ; orig_coord_info "chr14,106482435,106482637,+"  ; tag TAGENE ; transcript_id "LINC00221--SPG7^ENST00000603633.3"  ; transcript_name "LINC00221-201"  ; transcript_support_level 2 ; transcript_type lncRNA
LINC00221--SPG7	HAVANA	RNA	1001	6660	.	+	.	FI_gene_label "LINC00221^ENSG00000270816.6"  ; ID "LINC00221--SPG7^ENST00000603633.3"  ; Parent "LINC00221--SPG7^LINC00221^ENSG00000270816.6"  ; exon_id "ENSE00003747900.2"  ; exon_number 1 ; gene_id "LINC00221--SPG7^LINC00221^ENSG00000270816.6"  ; gene_name LINC00221 ; gene_type lncRNA ; havana_gene "OTTHUMG00000152084.5"  ; havana_transcript "OTTHUMT00000325180.3"  ; hgnc_id "HGNC:20169"  ; level 2 ; orig_coord_info "chr14,106482435,106482637,+"  ; tag TAGENE ; transcript_id "LINC00221--SPG7^ENST00000603633.3"  ; transcript_name "LINC00221-201"  ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created: 
NPM1--MT-RNR2	ENSEMBL	gene	18634	20192	.	+	.	FI_gene_label "MT-RNR2^ENSG00000210082.2"  ; ID "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2"  ; exon_id "ENSE00001544497.2"  ; exon_number 1 ; gene_id "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2"  ; gene_name "MT-RNR2"  ; gene_type Mt_rRNA ; hgnc_id "HGNC:7471"  ; level 3 ; orig_coord_info "chrM,1671,3229,+"  ; tag basic ; transcript_id "NPM1--MT-RNR2^ENST00000387347.2"  ; transcript_name "MT-RNR2-201"  ; transcript_support_level NA ; transcript_type Mt_rRNA
NPM1--MT-RNR2	ENSEMBL	RNA	18634	20192	.	+	.	FI_gene_label "MT-RNR2^ENSG00000210082.2"  ; ID "NPM1--MT-RNR2^ENST00000387347.2"  ; Parent "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2"  ; exon_id "ENSE00001544497.2"  ; exon_number 1 ; gene_id "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2"  ; gene_name "MT-RNR2"  ; gene_type Mt_rRNA ; hgnc_id "HGNC:7471"  ; level 3 ; orig_coord_info "chrM,1671,3229,+"  ; tag basic ; transcript_id "NPM1--MT-RNR2^ENST00000387347.2"  ; transcript_name "MT-RNR2-201"  ; transcript_support_level NA ; transcript_type Mt_rRNA
L1 and L2 created: 
SELENOOLP--HOOK1	HAVANA	gene	8757	11915	.	+	.	FI_gene_label "SELENOOLP^ENSG00000227932.2"  ; ID "SELENOOLP--HOOK1^SELENOOLP^ENSG00000227932.2"  ; exon_id "ENSE00001728877.1"  ; exon_number 1 ; gene_id "SELENOOLP--HOOK1^SELENOOLP^ENSG00000227932.2"  ; gene_name SELENOOLP ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000017843.2"  ; havana_transcript "OTTHUMT00000047275.1"  ; hgnc_id "HGNC:53787"  ; level 2 ; orig_coord_info "chr10,26676116,26676159,-"  ; tag basic ; transcript_id "SELENOOLP--HOOK1^ENST00000446557.1"  ; transcript_name "SELENOOLP-201"  ; transcript_support_level 2 ; transcript_type processed_transcript
SELENOOLP--HOOK1	HAVANA	RNA	8757	11915	.	+	.	FI_gene_label "SELENOOLP^ENSG00000227932.2"  ; ID "SELENOOLP--HOOK1^ENST00000446557.1"  ; Parent "SELENOOLP--HOOK1^SELENOOLP^ENSG00000227932.2"  ; exon_id "ENSE00001728877.1"  ; exon_number 1 ; gene_id "SELENOOLP--HOOK1^SELENOOLP^ENSG00000227932.2"  ; gene_name SELENOOLP ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000017843.2"  ; havana_transcript "OTTHUMT00000047275.1"  ; hgnc_id "HGNC:53787"  ; level 2 ; orig_coord_info "chr10,26676116,26676159,-"  ; tag basic ; transcript_id "SELENOOLP--HOOK1^ENST00000446557.1"  ; transcript_name "SELENOOLP-201"  ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created: 
SMURF2P1--SP2	HAVANA	gene	1070	5305	.	+	.	FI_gene_label "SMURF2P1^ENSG00000248121.8"  ; ID "SMURF2P1--SP2^SMURF2P1^ENSG00000248121.8"  ; exon_id "ENSE00002054081.1"  ; exon_number 1 ; gene_id "SMURF2P1--SP2^SMURF2P1^ENSG00000248121.8"  ; gene_name SMURF2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000132798.3"  ; havana_transcript "OTTHUMT00000256215.2"  ; hgnc_id "HGNC:44402"  ; level 2 ; ont "PGO:0000005"  "PGO:0000019"  ; orig_coord_info "chr17,30600865,30600916,+"  ; tag basic ; transcript_id "SMURF2P1--SP2^ENST00000514992.2"  ; transcript_name "SMURF2P1-201"  ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
SMURF2P1--SP2	HAVANA	RNA	1070	5305	.	+	.	FI_gene_label "SMURF2P1^ENSG00000248121.8"  ; ID "SMURF2P1--SP2^ENST00000514992.2"  ; Parent "SMURF2P1--SP2^SMURF2P1^ENSG00000248121.8"  ; exon_id "ENSE00002054081.1"  ; exon_number 1 ; gene_id "SMURF2P1--SP2^SMURF2P1^ENSG00000248121.8"  ; gene_name SMURF2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000132798.3"  ; havana_transcript "OTTHUMT00000256215.2"  ; hgnc_id "HGNC:44402"  ; level 2 ; ont "PGO:0000005"  "PGO:0000019"  ; orig_coord_info "chr17,30600865,30600916,+"  ; tag basic ; transcript_id "SMURF2P1--SP2^ENST00000514992.2"  ; transcript_name "SMURF2P1-201"  ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created: 
SPG7--AC092957.1	HAVANA	gene	52672	62475	.	+	.	FI_gene_label "AC092957.1^ENSG00000243620.2"  ; ID "SPG7--AC092957.1^AC092957.1^ENSG00000243620.2"  ; exon_id "ENSE00001891085.1"  ; exon_number 1 ; gene_id "SPG7--AC092957.1^AC092957.1^ENSG00000243620.2"  ; gene_name "AC092957.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000159458.2"  ; havana_transcript "OTTHUMT00000355522.1"  ; level 2 ; orig_coord_info "chr3,147370633,147370656,-"  ; tag basic ; transcript_id "SPG7--AC092957.1^ENST00000473299.1"  ; transcript_name "AC092957.1-201"  ; transcript_support_level 4 ; transcript_type lncRNA
SPG7--AC092957.1	HAVANA	RNA	52672	62475	.	+	.	FI_gene_label "AC092957.1^ENSG00000243620.2"  ; ID "SPG7--AC092957.1^ENST00000473299.1"  ; Parent "SPG7--AC092957.1^AC092957.1^ENSG00000243620.2"  ; exon_id "ENSE00001891085.1"  ; exon_number 1 ; gene_id "SPG7--AC092957.1^AC092957.1^ENSG00000243620.2"  ; gene_name "AC092957.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000159458.2"  ; havana_transcript "OTTHUMT00000355522.1"  ; level 2 ; orig_coord_info "chr3,147370633,147370656,-"  ; tag basic ; transcript_id "SPG7--AC092957.1^ENST00000473299.1"  ; transcript_name "AC092957.1-201"  ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created: 
SUCLA2--AL158828.1	HAVANA	gene	38579	42742	.	+	.	FI_gene_label "AL158828.1^ENSG00000235819.2"  ; ID "SUCLA2--AL158828.1^AL158828.1^ENSG00000235819.2"  ; exon_id "ENSE00001597997.2"  ; exon_number 1 ; gene_id "SUCLA2--AL158828.1^AL158828.1^ENSG00000235819.2"  ; gene_name "AL158828.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000020138.6"  ; havana_transcript "OTTHUMT00000052925.2"  ; level 2 ; orig_coord_info "chr9,86414245,86414345,+"  ; tag basic TAGENE ; transcript_id "SUCLA2--AL158828.1^ENST00000438582.2"  ; transcript_name "AL158828.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
SUCLA2--AL158828.1	HAVANA	RNA	38579	42742	.	+	.	FI_gene_label "AL158828.1^ENSG00000235819.2"  ; ID "SUCLA2--AL158828.1^ENST00000438582.2"  ; Parent "SUCLA2--AL158828.1^AL158828.1^ENSG00000235819.2"  ; exon_id "ENSE00001597997.2"  ; exon_number 1 ; gene_id "SUCLA2--AL158828.1^AL158828.1^ENSG00000235819.2"  ; gene_name "AL158828.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000020138.6"  ; havana_transcript "OTTHUMT00000052925.2"  ; level 2 ; orig_coord_info "chr9,86414245,86414345,+"  ; tag basic TAGENE ; transcript_id "SUCLA2--AL158828.1^ENST00000438582.2"  ; transcript_name "AL158828.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created: 
SUCLA2--AL353613.1	HAVANA	gene	38535	41064	.	+	.	FI_gene_label "AL353613.1^ENSG00000232211.1"  ; ID "SUCLA2--AL353613.1^AL353613.1^ENSG00000232211.1"  ; exon_id "ENSE00001742471.1"  ; exon_number 1 ; gene_id "SUCLA2--AL353613.1^AL353613.1^ENSG00000232211.1"  ; gene_name "AL353613.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000020140.1"  ; havana_transcript "OTTHUMT00000052927.1"  ; level 2 ; orig_coord_info "chr9,86632147,86632268,+"  ; tag basic ; transcript_id "SUCLA2--AL353613.1^ENST00000443163.1"  ; transcript_name "AL353613.1-201"  ; transcript_support_level 3 ; transcript_type lncRNA
SUCLA2--AL353613.1	HAVANA	RNA	38535	41064	.	+	.	FI_gene_label "AL353613.1^ENSG00000232211.1"  ; ID "SUCLA2--AL353613.1^ENST00000443163.1"  ; Parent "SUCLA2--AL353613.1^AL353613.1^ENSG00000232211.1"  ; exon_id "ENSE00001742471.1"  ; exon_number 1 ; gene_id "SUCLA2--AL353613.1^AL353613.1^ENSG00000232211.1"  ; gene_name "AL353613.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000020140.1"  ; havana_transcript "OTTHUMT00000052927.1"  ; level 2 ; orig_coord_info "chr9,86632147,86632268,+"  ; tag basic ; transcript_id "SUCLA2--AL353613.1^ENST00000443163.1"  ; transcript_name "AL353613.1-201"  ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created: 
TLK2--AC240565.1	HAVANA	gene	40046	48301	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1	HAVANA	RNA	40046	48301	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "TLK2--AC240565.1^ENST00000624936.2"  ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created: 
TLK2P1--AC110079.1	HAVANA	gene	1001	4192	.	+	.	FI_gene_label "TLK2P1^ENSG00000226049.3"  ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3"  ; exon_id "ENSE00002174619.1"  ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3"  ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1"  ; havana_transcript "OTTHUMT00000389700.1"  ; hgnc_id "HGNC:18048"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr17,34036681,34039872,-"  ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1"  ; transcript_name "TLK2P1-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1	HAVANA	RNA	1001	4192	.	+	.	FI_gene_label "TLK2P1^ENSG00000226049.3"  ; ID "TLK2P1--AC110079.1^ENST00000530992.1"  ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3"  ; exon_id "ENSE00002174619.1"  ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3"  ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1"  ; havana_transcript "OTTHUMT00000389700.1"  ; hgnc_id "HGNC:18048"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr17,34036681,34039872,-"  ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1"  ; transcript_name "TLK2P1-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created: 
TLK2P1--AC110079.1	HAVANA	gene	7193	19707	.	+	.	FI_gene_label "AC110079.1^ENSG00000260404.3"  ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3"  ; exon_id "ENSE00002625896.1"  ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3"  ; gene_name "AC110079.1"  ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4"  ; havana_transcript "OTTHUMT00000364170.2"  ; level 2 ; orig_coord_info "chr4,118591773,118591895,+"  ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2"  ; transcript_name "AC110079.1-201"  ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1	HAVANA	RNA	7193	19707	.	+	.	FI_gene_label "AC110079.1^ENSG00000260404.3"  ; ID "TLK2P1--AC110079.1^ENST00000567913.2"  ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3"  ; exon_id "ENSE00002625896.1"  ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3"  ; gene_name "AC110079.1"  ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4"  ; havana_transcript "OTTHUMT00000364170.2"  ; level 2 ; orig_coord_info "chr4,118591773,118591895,+"  ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2"  ; transcript_name "AC110079.1-201"  ; transcript_support_level 5 ; transcript_type processed_transcript
864 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------

------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------

------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------

----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------

----------------------------- Check10: check utrs ------------------------------
2053 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 1 seconds -------------------------------

------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------

------------------------ Check12: all level1 locations -------------------------
We fixed 49 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------

---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
                  ------ End checks (done in 1 second) ------                   


GFF3 file parsed