File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/e814031952b00d527f8f0d8a5fa8e5/.command.log
Size
1.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_TO_MULTIQC (A673_FFPE_RNA_0001_B23LG7FLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/e814031952b00d527f8f0d8a5fa8e5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/cd7bc11e8896ed0d1295e8969a492c/A673_FFPE_RNA_0001_B23LG7FLT4_2/A673_FFPE_RNA_0001_B23LG7FLT4_2_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/e814031952b00d527f8f0d8a5fa8e5/.command.run
==> STAGING COMPLETE (3 inputs)

Processing SeqTools file: A673_FFPE_RNA_0001_B23LG7FLT4_2_full_basic_stats.tsv
Warning: scipy not available. GC bias calculation will be simplified.
Successfully converted A673_FFPE_RNA_0001_B23LG7FLT4_2_full_basic_stats.tsv to A673_FFPE_RNA_0001_B23LG7FLT4_2_seqtool_mqc.tsv
  Samples: 1
  SeqTools (general stats) columns: 18
  Metrics: reads, frac_unmapped, frac_dupes, unique_reads, frac_reads_on_target, frac_pairs_on_target, frac_reads_off_target, frac_pairs_off_target, reads_on_target, pairs_on_target, reads_off_target, pairs_off_target, mean_depth, q50_depth, frac_bases_gt30x, frac_bases_gt100x, n_q30, gc_bias