Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/99c40323c241ef8c796831fa72cffc/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/db75d47e591bee32a00f85ccaefe3a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/db75d47e591bee32a00f85ccaefe3a/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
paired = 8760996
unpaired = 226387
MERGED PAIRED END READS = 8760996
MATES PROCESSED = 17748379
TOTAL READS = 8987383
DISTINCT READS = 1.09998e+06
DISTINCT COUNTS = 299
MAX COUNT = 29685
COUNTS OF 1 = 440218
MAX TERMS = 100
OBSERVED COUNTS (29686)
1 440218
2 146820
3 63477
4 39570
5 31691
6 27707
7 24958
8 23208
9 21314
10 19743
11 18333
12 17191
13 15873
14 14944
15 13665
16 12660
17 11675
18 10849
19 9926
20 9130
21 8525
22 7983
23 7258
24 6777
25 6302
26 5854
27 5253
28 5028
29 4547
30 4269
31 4025
32 3660
33 3451
34 3171
35 3011
36 2802
37 2556
38 2339
39 2162
40 2051
41 1949
42 1798
43 1681
44 1595
45 1491
46 1374
47 1339
48 1194
49 1189
50 1083
51 990
52 1028
53 902
54 903
55 804
56 760
57 760
58 678
59 656
60 650
61 574
62 581
63 525
64 535
65 491
66 489
67 439
68 397
69 419
70 370
71 336
72 354
73 336
74 298
75 287
76 260
77 275
78 259
79 229
80 238
81 205
82 199
83 187
84 196
85 192
86 177
87 155
88 181
89 160
90 156
91 137
92 121
93 141
94 121
95 133
96 130
97 99
98 98
99 88
100 102
101 94
102 79
103 79
104 75
105 75
106 80
107 74
108 48
109 73
110 68
111 54
112 60
113 65
114 61
115 51
116 41
117 46
118 44
119 38
120 57
121 48
122 37
123 34
124 35
125 35
126 33
127 20
128 43
129 25
130 33
131 29
132 30
133 33
134 23
135 27
136 35
137 27
138 13
139 26
140 12
141 14
142 19
143 21
144 9
145 22
146 14
147 11
148 14
149 24
150 11
151 14
152 12
153 16
154 15
155 11
156 7
157 19
158 14
159 8
160 14
161 7
162 11
163 9
164 11
165 7
166 5
167 6
168 6
169 4
170 4
171 9
172 7
173 4
174 5
175 7
176 3
177 1
178 1
179 4
180 7
181 5
182 6
183 5
184 5
185 2
186 2
187 5
188 5
189 5
190 5
191 5
192 1
193 4
194 8
195 3
196 4
197 4
199 4
200 7
201 2
202 1
203 2
204 3
205 4
206 1
208 2
209 2
210 4
211 6
212 3
213 1
215 1
216 4
217 3
218 4
219 5
222 1
224 2
225 2
226 3
227 1
228 2
230 2
231 2
232 2
233 1
234 1
236 1
237 1
238 2
239 1
240 1
243 3
246 1
247 2
249 3
252 1
253 1
255 1
256 1
261 1
265 2
266 3
267 2
268 2
272 1
273 2
274 1
276 1
277 2
279 1
281 1
289 2
291 2
292 1
293 1
295 1
296 1
298 1
301 1
303 1
309 1
310 1
312 1
320 2
327 1
328 1
336 2
346 2
351 1
352 1
355 1
356 1
360 1
363 1
366 1
370 1
375 1
379 1
382 1
390 1
397 1
398 1
455 1
494 1
545 1
642 1
738 1
789 1
793 1
831 1
917 1
1050 1
1124 1
1125 1
1405 1
1599 1
1662 1
29685 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
............................................_......._..._...............
..._..........................._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]