#!/bin/bash -euo pipefail
contamination_to_multiqc.py \
    "BT-20_FFPE_RNA_0001_B23LG7FLT4_3.predictions.csv" \
    --output "BT-20_FFPE_RNA_0001_B23LG7FLT4_3_contamination_mqc.tsv" \
    --sample-id "BT-20_FFPE_RNA_0001_B23LG7FLT4_3"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    contamination_to_multiqc: 1.0.0
END_VERSIONS