Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/b1037de9a2bf66e57001e924cbae4d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/90c2ee4a70ab232de3e1265ef46ce2/fi_workdir/U118MG_FFPE_RNA_0001_B23LG7FLT4_2.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/b1037de9a2bf66e57001e924cbae4d/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 9312
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 9312
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:9312
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AK2--TESK2 HAVANA gene 2799 17375 . + . FI_gene_label "AK2^ENSG00000004455.17" ; ID "AK2--TESK2^AK2^ENSG00000004455.17" ; exon_id "ENSE00001886914.2" ; exon_number 1 ; gene_id "AK2--TESK2^AK2^ENSG00000004455.17" ; gene_name AK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004131.7" ; havana_transcript "OTTHUMT00000529335.1" ; hgnc_id "HGNC:362" ; level 2 ; orig_coord_info "chr1,33036736,33036828,-" ; protein_id "ENSP00000346921.7" ; tag RNA_Seq_supported_only basic ; transcript_id "AK2--TESK2^ENST00000354858.11" ; transcript_name "AK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AK2--TESK2 HAVANA mRNA 2799 17375 . + . FI_gene_label "AK2^ENSG00000004455.17" ; ID "AK2--TESK2^ENST00000354858.11" ; Parent "AK2--TESK2^AK2^ENSG00000004455.17" ; exon_id "ENSE00001886914.2" ; exon_number 1 ; gene_id "AK2--TESK2^AK2^ENSG00000004455.17" ; gene_name AK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004131.7" ; havana_transcript "OTTHUMT00000529335.1" ; hgnc_id "HGNC:362" ; level 2 ; orig_coord_info "chr1,33036736,33036828,-" ; protein_id "ENSP00000346921.7" ; tag RNA_Seq_supported_only basic ; transcript_id "AK2--TESK2^ENST00000354858.11" ; transcript_name "AK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AK2--TESK2 HAVANA gene 22712 32631 . + . FI_gene_label "TESK2^ENSG00000070759.17" ; ID "AK2--TESK2^TESK2^ENSG00000070759.17" ; exon_id "ENSE00001456873.1" ; exon_number 1 ; gene_id "AK2--TESK2^TESK2^ENSG00000070759.17" ; gene_name TESK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007680.3" ; havana_transcript "OTTHUMT00000020524.1" ; hgnc_id "HGNC:11732" ; level 2 ; orig_coord_info "chr1,45457564,45457785,-" ; protein_id "ENSP00000361156.1" ; tag basic ; transcript_id "AK2--TESK2^ENST00000372084.5" ; transcript_name "TESK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AK2--TESK2 HAVANA mRNA 22712 32631 . + . FI_gene_label "TESK2^ENSG00000070759.17" ; ID "AK2--TESK2^ENST00000372084.5" ; Parent "AK2--TESK2^TESK2^ENSG00000070759.17" ; exon_id "ENSE00001456873.1" ; exon_number 1 ; gene_id "AK2--TESK2^TESK2^ENSG00000070759.17" ; gene_name TESK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007680.3" ; havana_transcript "OTTHUMT00000020524.1" ; hgnc_id "HGNC:11732" ; level 2 ; orig_coord_info "chr1,45457564,45457785,-" ; protein_id "ENSP00000361156.1" ; tag basic ; transcript_id "AK2--TESK2^ENST00000372084.5" ; transcript_name "TESK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ALK--AC009413.1 HAVANA gene 1001 36005 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "ALK--AC009413.1^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "ALK--AC009413.1^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ALK--AC009413.1^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
ALK--AC009413.1 HAVANA mRNA 1001 36005 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "ALK--AC009413.1^ENST00000389048.8" ; Parent "ALK--AC009413.1^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "ALK--AC009413.1^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ALK--AC009413.1^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ALK--HNRNPA1P57 HAVANA gene 1001 36005 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "ALK--HNRNPA1P57^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "ALK--HNRNPA1P57^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ALK--HNRNPA1P57^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
ALK--HNRNPA1P57 HAVANA mRNA 1001 36005 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "ALK--HNRNPA1P57^ENST00000389048.8" ; Parent "ALK--HNRNPA1P57^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "ALK--HNRNPA1P57^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ALK--HNRNPA1P57^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF1--CPA6 HAVANA gene 1001 40961 . + . FI_gene_label "ARFGEF1^ENSG00000066777.9" ; ID "ARFGEF1--CPA6^ARFGEF1^ENSG00000066777.9" ; ccdsid "CCDS6199.1" ; exon_id "ENSE00001361276.3" ; exon_number 1 ; gene_id "ARFGEF1--CPA6^ARFGEF1^ENSG00000066777.9" ; gene_name ARFGEF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164626.8" ; havana_transcript "OTTHUMT00000379441.5" ; hgnc_id "HGNC:15772" ; level 2 ; orig_coord_info "chr8,67343164,67343287,-" ; protein_id "ENSP00000262215.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--CPA6^ENST00000262215.8" ; transcript_name "ARFGEF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF1--CPA6 HAVANA mRNA 1001 40961 . + . FI_gene_label "ARFGEF1^ENSG00000066777.9" ; ID "ARFGEF1--CPA6^ENST00000262215.8" ; Parent "ARFGEF1--CPA6^ARFGEF1^ENSG00000066777.9" ; ccdsid "CCDS6199.1" ; exon_id "ENSE00001361276.3" ; exon_number 1 ; gene_id "ARFGEF1--CPA6^ARFGEF1^ENSG00000066777.9" ; gene_name ARFGEF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164626.8" ; havana_transcript "OTTHUMT00000379441.5" ; hgnc_id "HGNC:15772" ; level 2 ; orig_coord_info "chr8,67343164,67343287,-" ; protein_id "ENSP00000262215.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--CPA6^ENST00000262215.8" ; transcript_name "ARFGEF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF1--CPA6 HAVANA gene 47042 61730 . + . FI_gene_label "CPA6^ENSG00000165078.13" ; ID "ARFGEF1--CPA6^CPA6^ENSG00000165078.13" ; ccdsid "CCDS6200.1" ; exon_id "ENSE00002109358.3" ; exon_number 1 ; gene_id "ARFGEF1--CPA6^CPA6^ENSG00000165078.13" ; gene_name CPA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164575.7" ; havana_transcript "OTTHUMT00000379296.5" ; hgnc_id "HGNC:17245" ; level 2 ; orig_coord_info "chr8,67746014,67746129,-" ; protein_id "ENSP00000297770.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--CPA6^ENST00000297770.10" ; transcript_name "CPA6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF1--CPA6 HAVANA mRNA 47042 61730 . + . FI_gene_label "CPA6^ENSG00000165078.13" ; ID "ARFGEF1--CPA6^ENST00000297770.10" ; Parent "ARFGEF1--CPA6^CPA6^ENSG00000165078.13" ; ccdsid "CCDS6200.1" ; exon_id "ENSE00002109358.3" ; exon_number 1 ; gene_id "ARFGEF1--CPA6^CPA6^ENSG00000165078.13" ; gene_name CPA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164575.7" ; havana_transcript "OTTHUMT00000379296.5" ; hgnc_id "HGNC:17245" ; level 2 ; orig_coord_info "chr8,67746014,67746129,-" ; protein_id "ENSP00000297770.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--CPA6^ENST00000297770.10" ; transcript_name "CPA6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF1--NDUFS5P6 HAVANA gene 1001 40961 . + . FI_gene_label "ARFGEF1^ENSG00000066777.9" ; ID "ARFGEF1--NDUFS5P6^ARFGEF1^ENSG00000066777.9" ; ccdsid "CCDS6199.1" ; exon_id "ENSE00001361276.3" ; exon_number 1 ; gene_id "ARFGEF1--NDUFS5P6^ARFGEF1^ENSG00000066777.9" ; gene_name ARFGEF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164626.8" ; havana_transcript "OTTHUMT00000379441.5" ; hgnc_id "HGNC:15772" ; level 2 ; orig_coord_info "chr8,67343164,67343287,-" ; protein_id "ENSP00000262215.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--NDUFS5P6^ENST00000262215.8" ; transcript_name "ARFGEF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF1--NDUFS5P6 HAVANA mRNA 1001 40961 . + . FI_gene_label "ARFGEF1^ENSG00000066777.9" ; ID "ARFGEF1--NDUFS5P6^ENST00000262215.8" ; Parent "ARFGEF1--NDUFS5P6^ARFGEF1^ENSG00000066777.9" ; ccdsid "CCDS6199.1" ; exon_id "ENSE00001361276.3" ; exon_number 1 ; gene_id "ARFGEF1--NDUFS5P6^ARFGEF1^ENSG00000066777.9" ; gene_name ARFGEF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164626.8" ; havana_transcript "OTTHUMT00000379441.5" ; hgnc_id "HGNC:15772" ; level 2 ; orig_coord_info "chr8,67343164,67343287,-" ; protein_id "ENSP00000262215.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--NDUFS5P6^ENST00000262215.8" ; transcript_name "ARFGEF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF1--PREX2 HAVANA gene 1001 40961 . + . FI_gene_label "ARFGEF1^ENSG00000066777.9" ; ID "ARFGEF1--PREX2^ARFGEF1^ENSG00000066777.9" ; ccdsid "CCDS6199.1" ; exon_id "ENSE00001361276.3" ; exon_number 1 ; gene_id "ARFGEF1--PREX2^ARFGEF1^ENSG00000066777.9" ; gene_name ARFGEF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164626.8" ; havana_transcript "OTTHUMT00000379441.5" ; hgnc_id "HGNC:15772" ; level 2 ; orig_coord_info "chr8,67343164,67343287,-" ; protein_id "ENSP00000262215.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--PREX2^ENST00000262215.8" ; transcript_name "ARFGEF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF1--PREX2 HAVANA mRNA 1001 40961 . + . FI_gene_label "ARFGEF1^ENSG00000066777.9" ; ID "ARFGEF1--PREX2^ENST00000262215.8" ; Parent "ARFGEF1--PREX2^ARFGEF1^ENSG00000066777.9" ; ccdsid "CCDS6199.1" ; exon_id "ENSE00001361276.3" ; exon_number 1 ; gene_id "ARFGEF1--PREX2^ARFGEF1^ENSG00000066777.9" ; gene_name ARFGEF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164626.8" ; havana_transcript "OTTHUMT00000379441.5" ; hgnc_id "HGNC:15772" ; level 2 ; orig_coord_info "chr8,67343164,67343287,-" ; protein_id "ENSP00000262215.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--PREX2^ENST00000262215.8" ; transcript_name "ARFGEF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF1--PREX2 HAVANA gene 47024 98661 . + . FI_gene_label "PREX2^ENSG00000046889.19" ; ID "ARFGEF1--PREX2^PREX2^ENSG00000046889.19" ; ccdsid "CCDS6201.1" ; exon_id "ENSE00001415983.2" ; exon_number 1 ; gene_id "ARFGEF1--PREX2^PREX2^ENSG00000046889.19" ; gene_name PREX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164402.3" ; havana_transcript "OTTHUMT00000378620.2" ; hgnc_id "HGNC:22950" ; level 2 ; orig_coord_info "chr8,67952395,67952535,+" ; protein_id "ENSP00000288368.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--PREX2^ENST00000288368.5" ; transcript_name "PREX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF1--PREX2 HAVANA mRNA 47024 98661 . + . FI_gene_label "PREX2^ENSG00000046889.19" ; ID "ARFGEF1--PREX2^ENST00000288368.5" ; Parent "ARFGEF1--PREX2^PREX2^ENSG00000046889.19" ; ccdsid "CCDS6201.1" ; exon_id "ENSE00001415983.2" ; exon_number 1 ; gene_id "ARFGEF1--PREX2^PREX2^ENSG00000046889.19" ; gene_name PREX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164402.3" ; havana_transcript "OTTHUMT00000378620.2" ; hgnc_id "HGNC:22950" ; level 2 ; orig_coord_info "chr8,67952395,67952535,+" ; protein_id "ENSP00000288368.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARFGEF1--PREX2^ENST00000288368.5" ; transcript_name "PREX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARHSP1--PDILT HAVANA gene 14162 27516 . + . FI_gene_label "PDILT^ENSG00000169340.10" ; ID "CARHSP1--PDILT^PDILT^ENSG00000169340.10" ; ccdsid "CCDS10584.1" ; exon_id "ENSE00001304204.2" ; exon_number 2 ; gene_id "CARHSP1--PDILT^PDILT^ENSG00000169340.10" ; gene_name PDILT ; gene_type protein_coding ; havana_gene "OTTHUMG00000131487.3" ; havana_transcript "OTTHUMT00000254332.2" ; hgnc_id "HGNC:27338" ; level 2 ; orig_coord_info "chr16,20399099,20399300,-" ; protein_id "ENSP00000305465.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARHSP1--PDILT^ENST00000302451.9" ; transcript_name "PDILT-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARHSP1--PDILT HAVANA mRNA 14162 27516 . + . FI_gene_label "PDILT^ENSG00000169340.10" ; ID "CARHSP1--PDILT^ENST00000302451.9" ; Parent "CARHSP1--PDILT^PDILT^ENSG00000169340.10" ; ccdsid "CCDS10584.1" ; exon_id "ENSE00001304204.2" ; exon_number 2 ; gene_id "CARHSP1--PDILT^PDILT^ENSG00000169340.10" ; gene_name PDILT ; gene_type protein_coding ; havana_gene "OTTHUMG00000131487.3" ; havana_transcript "OTTHUMT00000254332.2" ; hgnc_id "HGNC:27338" ; level 2 ; orig_coord_info "chr16,20399099,20399300,-" ; protein_id "ENSP00000305465.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARHSP1--PDILT^ENST00000302451.9" ; transcript_name "PDILT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARHSP1--PDILT HAVANA gene 1007 11156 . + . FI_gene_label "CARHSP1^ENSG00000153048.11" ; ID "CARHSP1--PDILT^CARHSP1^ENSG00000153048.11" ; ccdsid "CCDS10537.1" ; exon_id "ENSE00003650612.1" ; exon_number 2 ; gene_id "CARHSP1--PDILT^CARHSP1^ENSG00000153048.11" ; gene_name CARHSP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129695.5" ; havana_transcript "OTTHUMT00000434250.2" ; hgnc_id "HGNC:17150" ; level 2 ; orig_coord_info "chr16,8859171,8859328,-" ; protein_id "ENSP00000311847.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARHSP1--PDILT^ENST00000311052.10" ; transcript_name "CARHSP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARHSP1--PDILT HAVANA mRNA 1007 11156 . + . FI_gene_label "CARHSP1^ENSG00000153048.11" ; ID "CARHSP1--PDILT^ENST00000311052.10" ; Parent "CARHSP1--PDILT^CARHSP1^ENSG00000153048.11" ; ccdsid "CCDS10537.1" ; exon_id "ENSE00003650612.1" ; exon_number 2 ; gene_id "CARHSP1--PDILT^CARHSP1^ENSG00000153048.11" ; gene_name CARHSP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129695.5" ; havana_transcript "OTTHUMT00000434250.2" ; hgnc_id "HGNC:17150" ; level 2 ; orig_coord_info "chr16,8859171,8859328,-" ; protein_id "ENSP00000311847.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARHSP1--PDILT^ENST00000311052.10" ; transcript_name "CARHSP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP128--AL359232.1 HAVANA gene 5480 19973 . + . FI_gene_label "CEP128^ENSG00000100629.17" ; ID "CEP128--AL359232.1^CEP128^ENSG00000100629.17" ; exon_id "ENSE00003508511.1" ; exon_number 3 ; gene_id "CEP128--AL359232.1^CEP128^ENSG00000100629.17" ; gene_name CEP128 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171442.5" ; havana_transcript "OTTHUMT00000413420.1" ; hgnc_id "HGNC:20359" ; level 2 ; orig_coord_info "chr14,80916401,80916547,-" ; protein_id "ENSP00000216517.6" ; tag basic appris_alternative_2 ; transcript_id "CEP128--AL359232.1^ENST00000216517.10" ; transcript_name "CEP128-201" ; transcript_support_level 1 ; transcript_type protein_coding
CEP128--AL359232.1 HAVANA mRNA 5480 19973 . + . FI_gene_label "CEP128^ENSG00000100629.17" ; ID "CEP128--AL359232.1^ENST00000216517.10" ; Parent "CEP128--AL359232.1^CEP128^ENSG00000100629.17" ; exon_id "ENSE00003508511.1" ; exon_number 3 ; gene_id "CEP128--AL359232.1^CEP128^ENSG00000100629.17" ; gene_name CEP128 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171442.5" ; havana_transcript "OTTHUMT00000413420.1" ; hgnc_id "HGNC:20359" ; level 2 ; orig_coord_info "chr14,80916401,80916547,-" ; protein_id "ENSP00000216517.6" ; tag basic appris_alternative_2 ; transcript_id "CEP128--AL359232.1^ENST00000216517.10" ; transcript_name "CEP128-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP128--ALDH6A1 HAVANA gene 5480 19973 . + . FI_gene_label "CEP128^ENSG00000100629.17" ; ID "CEP128--ALDH6A1^CEP128^ENSG00000100629.17" ; exon_id "ENSE00003508511.1" ; exon_number 3 ; gene_id "CEP128--ALDH6A1^CEP128^ENSG00000100629.17" ; gene_name CEP128 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171442.5" ; havana_transcript "OTTHUMT00000413420.1" ; hgnc_id "HGNC:20359" ; level 2 ; orig_coord_info "chr14,80916401,80916547,-" ; protein_id "ENSP00000216517.6" ; tag basic appris_alternative_2 ; transcript_id "CEP128--ALDH6A1^ENST00000216517.10" ; transcript_name "CEP128-201" ; transcript_support_level 1 ; transcript_type protein_coding
CEP128--ALDH6A1 HAVANA mRNA 5480 19973 . + . FI_gene_label "CEP128^ENSG00000100629.17" ; ID "CEP128--ALDH6A1^ENST00000216517.10" ; Parent "CEP128--ALDH6A1^CEP128^ENSG00000100629.17" ; exon_id "ENSE00003508511.1" ; exon_number 3 ; gene_id "CEP128--ALDH6A1^CEP128^ENSG00000100629.17" ; gene_name CEP128 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171442.5" ; havana_transcript "OTTHUMT00000413420.1" ; hgnc_id "HGNC:20359" ; level 2 ; orig_coord_info "chr14,80916401,80916547,-" ; protein_id "ENSP00000216517.6" ; tag basic appris_alternative_2 ; transcript_id "CEP128--ALDH6A1^ENST00000216517.10" ; transcript_name "CEP128-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP128--ALDH6A1 HAVANA gene 42669 52899 . + . FI_gene_label "ALDH6A1^ENSG00000119711.13" ; ID "CEP128--ALDH6A1^ALDH6A1^ENSG00000119711.13" ; ccdsid "CCDS61501.1" ; exon_id "ENSE00003467675.1" ; exon_number 1 ; gene_id "CEP128--ALDH6A1^ALDH6A1^ENSG00000119711.13" ; gene_name ALDH6A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171203.2" ; havana_transcript "OTTHUMT00000412311.1" ; hgnc_id "HGNC:7179" ; level 2 ; orig_coord_info "chr14,74084347,74084394,-" ; protein_id "ENSP00000342564.4" ; tag basic CCDS ; transcript_id "CEP128--ALDH6A1^ENST00000350259.8" ; transcript_name "ALDH6A1-201" ; transcript_support_level 2 ; transcript_type protein_coding
CEP128--ALDH6A1 HAVANA mRNA 42669 52899 . + . FI_gene_label "ALDH6A1^ENSG00000119711.13" ; ID "CEP128--ALDH6A1^ENST00000350259.8" ; Parent "CEP128--ALDH6A1^ALDH6A1^ENSG00000119711.13" ; ccdsid "CCDS61501.1" ; exon_id "ENSE00003467675.1" ; exon_number 1 ; gene_id "CEP128--ALDH6A1^ALDH6A1^ENSG00000119711.13" ; gene_name ALDH6A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171203.2" ; havana_transcript "OTTHUMT00000412311.1" ; hgnc_id "HGNC:7179" ; level 2 ; orig_coord_info "chr14,74084347,74084394,-" ; protein_id "ENSP00000342564.4" ; tag basic CCDS ; transcript_id "CEP128--ALDH6A1^ENST00000350259.8" ; transcript_name "ALDH6A1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CHD6--PTPRT HAVANA gene 51500 96759 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "CHD6--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "CHD6--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "CHD6--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
CHD6--PTPRT HAVANA mRNA 51500 96759 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "CHD6--PTPRT^ENST00000356100.6" ; Parent "CHD6--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "CHD6--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "CHD6--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CHD6--PTPRT HAVANA gene 1010 11607 . + . FI_gene_label "CHD6^ENSG00000124177.16" ; ID "CHD6--PTPRT^CHD6^ENSG00000124177.16" ; exon_id "ENSE00001459809.1" ; exon_number 2 ; gene_id "CHD6--PTPRT^CHD6^ENSG00000124177.16" ; gene_name CHD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032487.4" ; havana_transcript "OTTHUMT00000079275.1" ; hgnc_id "HGNC:19057" ; level 2 ; orig_coord_info "chr20,41564011,41564148,-" ; protein_id "ENSP00000362319.3" ; tag basic ; transcript_id "CHD6--PTPRT^ENST00000373222.3" ; transcript_name "CHD6-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHD6--PTPRT HAVANA mRNA 1010 11607 . + . FI_gene_label "CHD6^ENSG00000124177.16" ; ID "CHD6--PTPRT^ENST00000373222.3" ; Parent "CHD6--PTPRT^CHD6^ENSG00000124177.16" ; exon_id "ENSE00001459809.1" ; exon_number 2 ; gene_id "CHD6--PTPRT^CHD6^ENSG00000124177.16" ; gene_name CHD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032487.4" ; havana_transcript "OTTHUMT00000079275.1" ; hgnc_id "HGNC:19057" ; level 2 ; orig_coord_info "chr20,41564011,41564148,-" ; protein_id "ENSP00000362319.3" ; tag basic ; transcript_id "CHD6--PTPRT^ENST00000373222.3" ; transcript_name "CHD6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EFL1--GOLGA6L11P HAVANA gene 1001 25062 . + . FI_gene_label "EFL1^ENSG00000140598.15" ; ID "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; ccdsid "CCDS42071.1" ; exon_id "ENSE00003786417.1" ; exon_number 2 ; gene_id "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; gene_name EFL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172573.5" ; havana_transcript "OTTHUMT00000419252.2" ; hgnc_id "HGNC:25789" ; level 2 ; orig_coord_info "chr15,82261688,82261778,-" ; protein_id "ENSP00000268206.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EFL1--GOLGA6L11P^ENST00000268206.12" ; transcript_name "EFL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EFL1--GOLGA6L11P HAVANA mRNA 1001 25062 . + . FI_gene_label "EFL1^ENSG00000140598.15" ; ID "EFL1--GOLGA6L11P^ENST00000268206.12" ; Parent "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; ccdsid "CCDS42071.1" ; exon_id "ENSE00003786417.1" ; exon_number 2 ; gene_id "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; gene_name EFL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172573.5" ; havana_transcript "OTTHUMT00000419252.2" ; hgnc_id "HGNC:25789" ; level 2 ; orig_coord_info "chr15,82261688,82261778,-" ; protein_id "ENSP00000268206.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EFL1--GOLGA6L11P^ENST00000268206.12" ; transcript_name "EFL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FZR1--NFIC HAVANA gene 4908 12968 . + . FI_gene_label "FZR1^ENSG00000105325.15" ; ID "FZR1--NFIC^FZR1^ENSG00000105325.15" ; ccdsid "CCDS45917.1" ; exon_id "ENSE00002801550.1" ; exon_number 1 ; gene_id "FZR1--NFIC^FZR1^ENSG00000105325.15" ; gene_name FZR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180747.5" ; havana_transcript "OTTHUMT00000452938.1" ; hgnc_id "HGNC:24824" ; level 2 ; orig_coord_info "chr19,3522990,3523058,+" ; protein_id "ENSP00000321800.7" ; tag basic CCDS ; transcript_id "FZR1--NFIC^ENST00000313639.8" ; transcript_name "FZR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FZR1--NFIC HAVANA mRNA 4908 12968 . + . FI_gene_label "FZR1^ENSG00000105325.15" ; ID "FZR1--NFIC^ENST00000313639.8" ; Parent "FZR1--NFIC^FZR1^ENSG00000105325.15" ; ccdsid "CCDS45917.1" ; exon_id "ENSE00002801550.1" ; exon_number 1 ; gene_id "FZR1--NFIC^FZR1^ENSG00000105325.15" ; gene_name FZR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180747.5" ; havana_transcript "OTTHUMT00000452938.1" ; hgnc_id "HGNC:24824" ; level 2 ; orig_coord_info "chr19,3522990,3523058,+" ; protein_id "ENSP00000321800.7" ; tag basic CCDS ; transcript_id "FZR1--NFIC^ENST00000313639.8" ; transcript_name "FZR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FZR1--NFIC HAVANA gene 22044 36346 . + . FI_gene_label "NFIC^ENSG00000141905.19" ; ID "FZR1--NFIC^NFIC^ENSG00000141905.19" ; ccdsid "CCDS12107.1" ; exon_id "ENSE00002938816.1" ; exon_number 1 ; gene_id "FZR1--NFIC^NFIC^ENSG00000141905.19" ; gene_name NFIC ; gene_type protein_coding ; havana_gene "OTTHUMG00000180731.8" ; havana_transcript "OTTHUMT00000452832.1" ; hgnc_id "HGNC:7786" ; level 2 ; orig_coord_info "chr19,3366637,3366666,+" ; protein_id "ENSP00000342194.2" ; tag basic CCDS ; transcript_id "FZR1--NFIC^ENST00000341919.7" ; transcript_name "NFIC-201" ; transcript_support_level 1 ; transcript_type protein_coding
FZR1--NFIC HAVANA mRNA 22044 36346 . + . FI_gene_label "NFIC^ENSG00000141905.19" ; ID "FZR1--NFIC^ENST00000341919.7" ; Parent "FZR1--NFIC^NFIC^ENSG00000141905.19" ; ccdsid "CCDS12107.1" ; exon_id "ENSE00002938816.1" ; exon_number 1 ; gene_id "FZR1--NFIC^NFIC^ENSG00000141905.19" ; gene_name NFIC ; gene_type protein_coding ; havana_gene "OTTHUMG00000180731.8" ; havana_transcript "OTTHUMT00000452832.1" ; hgnc_id "HGNC:7786" ; level 2 ; orig_coord_info "chr19,3366637,3366666,+" ; protein_id "ENSP00000342194.2" ; tag basic CCDS ; transcript_id "FZR1--NFIC^ENST00000341919.7" ; transcript_name "NFIC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GOPC--ROS1 HAVANA gene 1015 13628 . + . FI_gene_label "GOPC^ENSG00000047932.14" ; ID "GOPC--ROS1^GOPC^ENSG00000047932.14" ; ccdsid "CCDS34523.1" ; exon_id "ENSE00000919104.8" ; exon_number 1 ; gene_id "GOPC--ROS1^GOPC^ENSG00000047932.14" ; gene_name GOPC ; gene_type protein_coding ; havana_gene "OTTHUMG00000015457.3" ; havana_transcript "OTTHUMT00000041987.1" ; hgnc_id "HGNC:17643" ; level 2 ; orig_coord_info "chr6,117602004,117602288,-" ; protein_id "ENSP00000052569.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "GOPC--ROS1^ENST00000052569.10" ; transcript_name "GOPC-201" ; transcript_support_level 1 ; transcript_type protein_coding
GOPC--ROS1 HAVANA mRNA 1015 13628 . + . FI_gene_label "GOPC^ENSG00000047932.14" ; ID "GOPC--ROS1^ENST00000052569.10" ; Parent "GOPC--ROS1^GOPC^ENSG00000047932.14" ; ccdsid "CCDS34523.1" ; exon_id "ENSE00000919104.8" ; exon_number 1 ; gene_id "GOPC--ROS1^GOPC^ENSG00000047932.14" ; gene_name GOPC ; gene_type protein_coding ; havana_gene "OTTHUMG00000015457.3" ; havana_transcript "OTTHUMT00000041987.1" ; hgnc_id "HGNC:17643" ; level 2 ; orig_coord_info "chr6,117602004,117602288,-" ; protein_id "ENSP00000052569.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "GOPC--ROS1^ENST00000052569.10" ; transcript_name "GOPC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GOPC--ROS1 HAVANA gene 16629 64008 . + . FI_gene_label "ROS1^ENSG00000047936.11" ; ID "GOPC--ROS1^ROS1^ENSG00000047936.11" ; exon_id "ENSE00003906517.1" ; exon_number 1 ; gene_id "GOPC--ROS1^ROS1^ENSG00000047936.11" ; gene_name ROS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016188.1" ; havana_transcript "OTTHUMT00000043465.1" ; hgnc_id "HGNC:10261" ; level 2 ; orig_coord_info "chr6,117425534,117425656,-" ; protein_id "ENSP00000357493.3" ; tag basic MANE_Select appris_principal_4 ; transcript_id "GOPC--ROS1^ENST00000368507.8" ; transcript_name "ROS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
GOPC--ROS1 HAVANA mRNA 16629 64008 . + . FI_gene_label "ROS1^ENSG00000047936.11" ; ID "GOPC--ROS1^ENST00000368507.8" ; Parent "GOPC--ROS1^ROS1^ENSG00000047936.11" ; exon_id "ENSE00003906517.1" ; exon_number 1 ; gene_id "GOPC--ROS1^ROS1^ENSG00000047936.11" ; gene_name ROS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016188.1" ; havana_transcript "OTTHUMT00000043465.1" ; hgnc_id "HGNC:10261" ; level 2 ; orig_coord_info "chr6,117425534,117425656,-" ; protein_id "ENSP00000357493.3" ; tag basic MANE_Select appris_principal_4 ; transcript_id "GOPC--ROS1^ENST00000368507.8" ; transcript_name "ROS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
HMGA2--CHMP1A HAVANA gene 1001 11887 . + . FI_gene_label "HMGA2^ENSG00000149948.14" ; ID "HMGA2--CHMP1A^HMGA2^ENSG00000149948.14" ; ccdsid "CCDS31854.1" ; exon_id "ENSE00001242304.6" ; exon_number 1 ; gene_id "HMGA2--CHMP1A^HMGA2^ENSG00000149948.14" ; gene_name HMGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168936.2" ; havana_transcript "OTTHUMT00000401660.1" ; hgnc_id "HGNC:5009" ; level 2 ; orig_coord_info "chr12,65825271,65825381,+" ; protein_id "ENSP00000346658.3" ; tag basic CCDS ; transcript_id "HMGA2--CHMP1A^ENST00000354636.7" ; transcript_name "HMGA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
HMGA2--CHMP1A HAVANA mRNA 1001 11887 . + . FI_gene_label "HMGA2^ENSG00000149948.14" ; ID "HMGA2--CHMP1A^ENST00000354636.7" ; Parent "HMGA2--CHMP1A^HMGA2^ENSG00000149948.14" ; ccdsid "CCDS31854.1" ; exon_id "ENSE00001242304.6" ; exon_number 1 ; gene_id "HMGA2--CHMP1A^HMGA2^ENSG00000149948.14" ; gene_name HMGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168936.2" ; havana_transcript "OTTHUMT00000401660.1" ; hgnc_id "HGNC:5009" ; level 2 ; orig_coord_info "chr12,65825271,65825381,+" ; protein_id "ENSP00000346658.3" ; tag basic CCDS ; transcript_id "HMGA2--CHMP1A^ENST00000354636.7" ; transcript_name "HMGA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HMGA2--CHMP1A HAVANA gene 27437 37894 . + . FI_gene_label "CHMP1A^ENSG00000131165.16" ; ID "HMGA2--CHMP1A^CHMP1A^ENSG00000131165.16" ; ccdsid "CCDS45552.1" ; exon_id "ENSE00002339458.2" ; exon_number 1 ; gene_id "HMGA2--CHMP1A^CHMP1A^ENSG00000131165.16" ; gene_name CHMP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000169521.2" ; havana_transcript "OTTHUMT00000404581.2" ; hgnc_id "HGNC:8740" ; level 2 ; orig_coord_info "chr16,89657582,89657588,-" ; protein_id "ENSP00000380998.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HMGA2--CHMP1A^ENST00000397901.8" ; transcript_name "CHMP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
HMGA2--CHMP1A HAVANA mRNA 27437 37894 . + . FI_gene_label "CHMP1A^ENSG00000131165.16" ; ID "HMGA2--CHMP1A^ENST00000397901.8" ; Parent "HMGA2--CHMP1A^CHMP1A^ENSG00000131165.16" ; ccdsid "CCDS45552.1" ; exon_id "ENSE00002339458.2" ; exon_number 1 ; gene_id "HMGA2--CHMP1A^CHMP1A^ENSG00000131165.16" ; gene_name CHMP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000169521.2" ; havana_transcript "OTTHUMT00000404581.2" ; hgnc_id "HGNC:8740" ; level 2 ; orig_coord_info "chr16,89657582,89657588,-" ; protein_id "ENSP00000380998.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HMGA2--CHMP1A^ENST00000397901.8" ; transcript_name "CHMP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KHDRBS1--ARMH1 HAVANA gene 1001 10914 . + . FI_gene_label "KHDRBS1^ENSG00000121774.18" ; ID "KHDRBS1--ARMH1^KHDRBS1^ENSG00000121774.18" ; ccdsid "CCDS350.1" ; exon_id "ENSE00001824447.2" ; exon_number 1 ; gene_id "KHDRBS1--ARMH1^KHDRBS1^ENSG00000121774.18" ; gene_name KHDRBS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003921.10" ; havana_transcript "OTTHUMT00000011199.5" ; hgnc_id "HGNC:18116" ; level 2 ; orig_coord_info "chr1,32013996,32014377,+" ; protein_id "ENSP00000313829.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KHDRBS1--ARMH1^ENST00000327300.12" ; transcript_name "KHDRBS1-202" ; transcript_support_level 1 ; transcript_type protein_coding
KHDRBS1--ARMH1 HAVANA mRNA 1001 10914 . + . FI_gene_label "KHDRBS1^ENSG00000121774.18" ; ID "KHDRBS1--ARMH1^ENST00000327300.12" ; Parent "KHDRBS1--ARMH1^KHDRBS1^ENSG00000121774.18" ; ccdsid "CCDS350.1" ; exon_id "ENSE00001824447.2" ; exon_number 1 ; gene_id "KHDRBS1--ARMH1^KHDRBS1^ENSG00000121774.18" ; gene_name KHDRBS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003921.10" ; havana_transcript "OTTHUMT00000011199.5" ; hgnc_id "HGNC:18116" ; level 2 ; orig_coord_info "chr1,32013996,32014377,+" ; protein_id "ENSP00000313829.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KHDRBS1--ARMH1^ENST00000327300.12" ; transcript_name "KHDRBS1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KHDRBS1--ARMH1 HAVANA gene 16684 24742 . + . FI_gene_label "ARMH1^ENSG00000198520.12" ; ID "KHDRBS1--ARMH1^ARMH1^ENSG00000198520.12" ; exon_id "ENSE00003581027.1" ; exon_number 4 ; gene_id "KHDRBS1--ARMH1^ARMH1^ENSG00000198520.12" ; gene_name ARMH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007834.10" ; havana_transcript "OTTHUMT00000023128.3" ; hgnc_id "HGNC:34345" ; level 1 ; orig_coord_info "chr1,44689698,44689903,+" ; protein_id "ENSP00000417206.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF exp_conf ; transcript_id "KHDRBS1--ARMH1^ENST00000418644.5" ; transcript_name "ARMH1-202" ; transcript_support_level 5 ; transcript_type protein_coding
KHDRBS1--ARMH1 HAVANA mRNA 16684 24742 . + . FI_gene_label "ARMH1^ENSG00000198520.12" ; ID "KHDRBS1--ARMH1^ENST00000418644.5" ; Parent "KHDRBS1--ARMH1^ARMH1^ENSG00000198520.12" ; exon_id "ENSE00003581027.1" ; exon_number 4 ; gene_id "KHDRBS1--ARMH1^ARMH1^ENSG00000198520.12" ; gene_name ARMH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007834.10" ; havana_transcript "OTTHUMT00000023128.3" ; hgnc_id "HGNC:34345" ; level 1 ; orig_coord_info "chr1,44689698,44689903,+" ; protein_id "ENSP00000417206.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF exp_conf ; transcript_id "KHDRBS1--ARMH1^ENST00000418644.5" ; transcript_name "ARMH1-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LIN52--CEP128 HAVANA gene 18172 32665 . + . FI_gene_label "CEP128^ENSG00000100629.17" ; ID "LIN52--CEP128^CEP128^ENSG00000100629.17" ; exon_id "ENSE00003508511.1" ; exon_number 3 ; gene_id "LIN52--CEP128^CEP128^ENSG00000100629.17" ; gene_name CEP128 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171442.5" ; havana_transcript "OTTHUMT00000413420.1" ; hgnc_id "HGNC:20359" ; level 2 ; orig_coord_info "chr14,80916401,80916547,-" ; protein_id "ENSP00000216517.6" ; tag basic appris_alternative_2 ; transcript_id "LIN52--CEP128^ENST00000216517.10" ; transcript_name "CEP128-201" ; transcript_support_level 1 ; transcript_type protein_coding
LIN52--CEP128 HAVANA mRNA 18172 32665 . + . FI_gene_label "CEP128^ENSG00000100629.17" ; ID "LIN52--CEP128^ENST00000216517.10" ; Parent "LIN52--CEP128^CEP128^ENSG00000100629.17" ; exon_id "ENSE00003508511.1" ; exon_number 3 ; gene_id "LIN52--CEP128^CEP128^ENSG00000100629.17" ; gene_name CEP128 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171442.5" ; havana_transcript "OTTHUMT00000413420.1" ; hgnc_id "HGNC:20359" ; level 2 ; orig_coord_info "chr14,80916401,80916547,-" ; protein_id "ENSP00000216517.6" ; tag basic appris_alternative_2 ; transcript_id "LIN52--CEP128^ENST00000216517.10" ; transcript_name "CEP128-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LIN52--CEP128 HAVANA gene 1161 8708 . + . FI_gene_label "LIN52^ENSG00000205659.11" ; ID "LIN52--CEP128^LIN52^ENSG00000205659.11" ; exon_id "ENSE00002513201.1" ; exon_number 1 ; gene_id "LIN52--CEP128^LIN52^ENSG00000205659.11" ; gene_name LIN52 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171204.4" ; havana_transcript "OTTHUMT00000412317.3" ; hgnc_id "HGNC:19856" ; level 2 ; orig_coord_info "chr14,74084975,74084993,+" ; protein_id "ENSP00000452513.2" ; tag basic ; transcript_id "LIN52--CEP128^ENST00000554938.2" ; transcript_name "LIN52-204" ; transcript_support_level 4 ; transcript_type protein_coding
LIN52--CEP128 HAVANA mRNA 1161 8708 . + . FI_gene_label "LIN52^ENSG00000205659.11" ; ID "LIN52--CEP128^ENST00000554938.2" ; Parent "LIN52--CEP128^LIN52^ENSG00000205659.11" ; exon_id "ENSE00002513201.1" ; exon_number 1 ; gene_id "LIN52--CEP128^LIN52^ENSG00000205659.11" ; gene_name LIN52 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171204.4" ; havana_transcript "OTTHUMT00000412317.3" ; hgnc_id "HGNC:19856" ; level 2 ; orig_coord_info "chr14,74084975,74084993,+" ; protein_id "ENSP00000452513.2" ; tag basic ; transcript_id "LIN52--CEP128^ENST00000554938.2" ; transcript_name "LIN52-204" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
LINC01674--POTED HAVANA gene 11421 24635 . + . FI_gene_label "POTED^ENSG00000166351.10" ; ID "LINC01674--POTED^POTED^ENSG00000166351.10" ; ccdsid "CCDS13562.1" ; exon_id "ENSE00001690230.2" ; exon_number 1 ; gene_id "LINC01674--POTED^POTED^ENSG00000166351.10" ; gene_name POTED ; gene_type protein_coding ; havana_gene "OTTHUMG00000074197.1" ; havana_transcript "OTTHUMT00000157660.1" ; hgnc_id "HGNC:23822" ; level 2 ; orig_coord_info "chr21,13610229,13610749,+" ; protein_id "ENSP00000299443.5" ; tag basic appris_principal_1 CCDS ; transcript_id "LINC01674--POTED^ENST00000299443.5" ; transcript_name "POTED-201" ; transcript_support_level 1 ; transcript_type protein_coding
LINC01674--POTED HAVANA mRNA 11421 24635 . + . FI_gene_label "POTED^ENSG00000166351.10" ; ID "LINC01674--POTED^ENST00000299443.5" ; Parent "LINC01674--POTED^POTED^ENSG00000166351.10" ; ccdsid "CCDS13562.1" ; exon_id "ENSE00001690230.2" ; exon_number 1 ; gene_id "LINC01674--POTED^POTED^ENSG00000166351.10" ; gene_name POTED ; gene_type protein_coding ; havana_gene "OTTHUMG00000074197.1" ; havana_transcript "OTTHUMT00000157660.1" ; hgnc_id "HGNC:23822" ; level 2 ; orig_coord_info "chr21,13610229,13610749,+" ; protein_id "ENSP00000299443.5" ; tag basic appris_principal_1 CCDS ; transcript_id "LINC01674--POTED^ENST00000299443.5" ; transcript_name "POTED-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MBNL2--LINC00456 ENSEMBL gene 1863 15275 . + . FI_gene_label "MBNL2^ENSG00000139793.19" ; ID "MBNL2--LINC00456^MBNL2^ENSG00000139793.19" ; ccdsid "CCDS9483.1" ; exon_id "ENSE00002718246.1" ; exon_number 2 ; gene_id "MBNL2--LINC00456^MBNL2^ENSG00000139793.19" ; gene_name MBNL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017239.4" ; hgnc_id "HGNC:16746" ; level 3 ; orig_coord_info "chr13,97276236,97276409,+" ; protein_id "ENSP00000344214.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "MBNL2--LINC00456^ENST00000343600.8" ; transcript_name "MBNL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MBNL2--LINC00456 ENSEMBL mRNA 1863 15275 . + . FI_gene_label "MBNL2^ENSG00000139793.19" ; ID "MBNL2--LINC00456^ENST00000343600.8" ; Parent "MBNL2--LINC00456^MBNL2^ENSG00000139793.19" ; ccdsid "CCDS9483.1" ; exon_id "ENSE00002718246.1" ; exon_number 2 ; gene_id "MBNL2--LINC00456^MBNL2^ENSG00000139793.19" ; gene_name MBNL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017239.4" ; hgnc_id "HGNC:16746" ; level 3 ; orig_coord_info "chr13,97276236,97276409,+" ; protein_id "ENSP00000344214.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "MBNL2--LINC00456^ENST00000343600.8" ; transcript_name "MBNL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MBNL2--OXGR1 HAVANA gene 18657 24027 . + . FI_gene_label "OXGR1^ENSG00000165621.8" ; ID "MBNL2--OXGR1^OXGR1^ENSG00000165621.8" ; ccdsid "CCDS9482.1" ; exon_id "ENSE00001094759.3" ; exon_number 4 ; gene_id "MBNL2--OXGR1^OXGR1^ENSG00000165621.8" ; gene_name OXGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017236.6" ; havana_transcript "OTTHUMT00000045521.3" ; hgnc_id "HGNC:4531" ; level 2 ; orig_coord_info "chr13,96986749,96987759,-" ; protein_id "ENSP00000298440.1" ; tag basic appris_principal_1 CCDS ; transcript_id "MBNL2--OXGR1^ENST00000298440.5" ; transcript_name "OXGR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
MBNL2--OXGR1 HAVANA mRNA 18657 24027 . + . FI_gene_label "OXGR1^ENSG00000165621.8" ; ID "MBNL2--OXGR1^ENST00000298440.5" ; Parent "MBNL2--OXGR1^OXGR1^ENSG00000165621.8" ; ccdsid "CCDS9482.1" ; exon_id "ENSE00001094759.3" ; exon_number 4 ; gene_id "MBNL2--OXGR1^OXGR1^ENSG00000165621.8" ; gene_name OXGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017236.6" ; havana_transcript "OTTHUMT00000045521.3" ; hgnc_id "HGNC:4531" ; level 2 ; orig_coord_info "chr13,96986749,96987759,-" ; protein_id "ENSP00000298440.1" ; tag basic appris_principal_1 CCDS ; transcript_id "MBNL2--OXGR1^ENST00000298440.5" ; transcript_name "OXGR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MBNL2--OXGR1 ENSEMBL gene 1863 15275 . + . FI_gene_label "MBNL2^ENSG00000139793.19" ; ID "MBNL2--OXGR1^MBNL2^ENSG00000139793.19" ; ccdsid "CCDS9483.1" ; exon_id "ENSE00002718246.1" ; exon_number 2 ; gene_id "MBNL2--OXGR1^MBNL2^ENSG00000139793.19" ; gene_name MBNL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017239.4" ; hgnc_id "HGNC:16746" ; level 3 ; orig_coord_info "chr13,97276236,97276409,+" ; protein_id "ENSP00000344214.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "MBNL2--OXGR1^ENST00000343600.8" ; transcript_name "MBNL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MBNL2--OXGR1 ENSEMBL mRNA 1863 15275 . + . FI_gene_label "MBNL2^ENSG00000139793.19" ; ID "MBNL2--OXGR1^ENST00000343600.8" ; Parent "MBNL2--OXGR1^MBNL2^ENSG00000139793.19" ; ccdsid "CCDS9483.1" ; exon_id "ENSE00002718246.1" ; exon_number 2 ; gene_id "MBNL2--OXGR1^MBNL2^ENSG00000139793.19" ; gene_name MBNL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017239.4" ; hgnc_id "HGNC:16746" ; level 3 ; orig_coord_info "chr13,97276236,97276409,+" ; protein_id "ENSP00000344214.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "MBNL2--OXGR1^ENST00000343600.8" ; transcript_name "MBNL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MIER1--CD177 HAVANA gene 4380 23837 . + . FI_gene_label "MIER1^ENSG00000198160.15" ; ID "MIER1--CD177^MIER1^ENSG00000198160.15" ; ccdsid "CCDS41348.1" ; exon_id "ENSE00001411846.1" ; exon_number 1 ; gene_id "MIER1--CD177^MIER1^ENSG00000198160.15" ; gene_name MIER1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009194.3" ; havana_transcript "OTTHUMT00000025491.2" ; hgnc_id "HGNC:29657" ; level 2 ; orig_coord_info "chr1,66930392,66930400,+" ; protein_id "ENSP00000347514.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "MIER1--CD177^ENST00000355356.3" ; transcript_name "MIER1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MIER1--CD177 HAVANA mRNA 4380 23837 . + . FI_gene_label "MIER1^ENSG00000198160.15" ; ID "MIER1--CD177^ENST00000355356.3" ; Parent "MIER1--CD177^MIER1^ENSG00000198160.15" ; ccdsid "CCDS41348.1" ; exon_id "ENSE00001411846.1" ; exon_number 1 ; gene_id "MIER1--CD177^MIER1^ENSG00000198160.15" ; gene_name MIER1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009194.3" ; havana_transcript "OTTHUMT00000025491.2" ; hgnc_id "HGNC:29657" ; level 2 ; orig_coord_info "chr1,66930392,66930400,+" ; protein_id "ENSP00000347514.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "MIER1--CD177^ENST00000355356.3" ; transcript_name "MIER1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MIER1--CD177 HAVANA gene 27456 32957 . + . FI_gene_label "CD177^ENSG00000204936.10" ; ID "MIER1--CD177^CD177^ENSG00000204936.10" ; exon_id "ENSE00003739430.1" ; exon_number 1 ; gene_id "MIER1--CD177^CD177^ENSG00000204936.10" ; gene_name CD177 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185320.4" ; havana_transcript "OTTHUMT00000470164.2" ; hgnc_id "HGNC:30072" ; level 2 ; orig_coord_info "chr19,43353715,43353766,+" ; protein_id "ENSP00000367251.2" ; transcript_id "MIER1--CD177^ENST00000378012.3" ; transcript_name "CD177-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
MIER1--CD177 HAVANA mRNA 27456 32957 . + . FI_gene_label "CD177^ENSG00000204936.10" ; ID "MIER1--CD177^ENST00000378012.3" ; Parent "MIER1--CD177^CD177^ENSG00000204936.10" ; exon_id "ENSE00003739430.1" ; exon_number 1 ; gene_id "MIER1--CD177^CD177^ENSG00000204936.10" ; gene_name CD177 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185320.4" ; havana_transcript "OTTHUMT00000470164.2" ; hgnc_id "HGNC:30072" ; level 2 ; orig_coord_info "chr19,43353715,43353766,+" ; protein_id "ENSP00000367251.2" ; transcript_id "MIER1--CD177^ENST00000378012.3" ; transcript_name "CD177-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
OR2M3--OR2M4 ENSEMBL gene 2038 3098 . + . FI_gene_label "OR2M3^ENSG00000228198.3" ; ID "OR2M3--OR2M4^OR2M3^ENSG00000228198.3" ; ccdsid "CCDS31107.1" ; exon_id "ENSE00001795337.3" ; exon_number 1 ; gene_id "OR2M3--OR2M4^OR2M3^ENSG00000228198.3" ; gene_name OR2M3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040459.3" ; hgnc_id "HGNC:8269" ; level 3 ; orig_coord_info "chr1,248203068,248204003,+" ; protein_id "ENSP00000389625.1" ; tag basic appris_principal_1 CCDS ; transcript_id "OR2M3--OR2M4^ENST00000456743.3" ; transcript_name "OR2M3-201" ; transcript_support_level NA ; transcript_type protein_coding
OR2M3--OR2M4 ENSEMBL mRNA 2038 3098 . + . FI_gene_label "OR2M3^ENSG00000228198.3" ; ID "OR2M3--OR2M4^ENST00000456743.3" ; Parent "OR2M3--OR2M4^OR2M3^ENSG00000228198.3" ; ccdsid "CCDS31107.1" ; exon_id "ENSE00001795337.3" ; exon_number 1 ; gene_id "OR2M3--OR2M4^OR2M3^ENSG00000228198.3" ; gene_name OR2M3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040459.3" ; hgnc_id "HGNC:8269" ; level 3 ; orig_coord_info "chr1,248203068,248204003,+" ; protein_id "ENSP00000389625.1" ; tag basic appris_principal_1 CCDS ; transcript_id "OR2M3--OR2M4^ENST00000456743.3" ; transcript_name "OR2M3-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
OR2M3--OR2M4 HAVANA gene 14934 21867 . + . FI_gene_label "OR2M4^ENSG00000171180.3" ; ID "OR2M3--OR2M4^OR2M4^ENSG00000171180.3" ; ccdsid "CCDS31108.1" ; exon_id "ENSE00003812108.1" ; exon_number 2 ; gene_id "OR2M3--OR2M4^OR2M4^ENSG00000171180.3" ; gene_name OR2M4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040456.3" ; havana_transcript "OTTHUMT00000097352.3" ; hgnc_id "HGNC:8270" ; level 2 ; orig_coord_info "chr1,248238929,248239861,+" ; protein_id "ENSP00000492992.1" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "OR2M3--OR2M4^ENST00000641868.1" ; transcript_name "OR2M4-201" ; transcript_type protein_coding
OR2M3--OR2M4 HAVANA mRNA 14934 21867 . + . FI_gene_label "OR2M4^ENSG00000171180.3" ; ID "OR2M3--OR2M4^ENST00000641868.1" ; Parent "OR2M3--OR2M4^OR2M4^ENSG00000171180.3" ; ccdsid "CCDS31108.1" ; exon_id "ENSE00003812108.1" ; exon_number 2 ; gene_id "OR2M3--OR2M4^OR2M4^ENSG00000171180.3" ; gene_name OR2M4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040456.3" ; havana_transcript "OTTHUMT00000097352.3" ; hgnc_id "HGNC:8270" ; level 2 ; orig_coord_info "chr1,248238929,248239861,+" ; protein_id "ENSP00000492992.1" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "OR2M3--OR2M4^ENST00000641868.1" ; transcript_name "OR2M4-201" ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PIK3C3--AC079238.1 HAVANA gene 1001 42831 . + . FI_gene_label "PIK3C3^ENSG00000078142.13" ; ID "PIK3C3--AC079238.1^PIK3C3^ENSG00000078142.13" ; ccdsid "CCDS11920.1" ; exon_id "ENSE00003804903.1" ; exon_number 1 ; gene_id "PIK3C3--AC079238.1^PIK3C3^ENSG00000078142.13" ; gene_name PIK3C3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132593.7" ; havana_transcript "OTTHUMT00000255804.2" ; hgnc_id "HGNC:8974" ; level 2 ; orig_coord_info "chr18,41955292,41955359,+" ; protein_id "ENSP00000262039.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIK3C3--AC079238.1^ENST00000262039.9" ; transcript_name "PIK3C3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PIK3C3--AC079238.1 HAVANA mRNA 1001 42831 . + . FI_gene_label "PIK3C3^ENSG00000078142.13" ; ID "PIK3C3--AC079238.1^ENST00000262039.9" ; Parent "PIK3C3--AC079238.1^PIK3C3^ENSG00000078142.13" ; ccdsid "CCDS11920.1" ; exon_id "ENSE00003804903.1" ; exon_number 1 ; gene_id "PIK3C3--AC079238.1^PIK3C3^ENSG00000078142.13" ; gene_name PIK3C3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132593.7" ; havana_transcript "OTTHUMT00000255804.2" ; hgnc_id "HGNC:8974" ; level 2 ; orig_coord_info "chr18,41955292,41955359,+" ; protein_id "ENSP00000262039.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIK3C3--AC079238.1^ENST00000262039.9" ; transcript_name "PIK3C3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PIK3C3--NAF1 HAVANA gene 1001 42831 . + . FI_gene_label "PIK3C3^ENSG00000078142.13" ; ID "PIK3C3--NAF1^PIK3C3^ENSG00000078142.13" ; ccdsid "CCDS11920.1" ; exon_id "ENSE00003804903.1" ; exon_number 1 ; gene_id "PIK3C3--NAF1^PIK3C3^ENSG00000078142.13" ; gene_name PIK3C3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132593.7" ; havana_transcript "OTTHUMT00000255804.2" ; hgnc_id "HGNC:8974" ; level 2 ; orig_coord_info "chr18,41955292,41955359,+" ; protein_id "ENSP00000262039.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIK3C3--NAF1^ENST00000262039.9" ; transcript_name "PIK3C3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PIK3C3--NAF1 HAVANA mRNA 1001 42831 . + . FI_gene_label "PIK3C3^ENSG00000078142.13" ; ID "PIK3C3--NAF1^ENST00000262039.9" ; Parent "PIK3C3--NAF1^PIK3C3^ENSG00000078142.13" ; ccdsid "CCDS11920.1" ; exon_id "ENSE00003804903.1" ; exon_number 1 ; gene_id "PIK3C3--NAF1^PIK3C3^ENSG00000078142.13" ; gene_name PIK3C3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132593.7" ; havana_transcript "OTTHUMT00000255804.2" ; hgnc_id "HGNC:8974" ; level 2 ; orig_coord_info "chr18,41955292,41955359,+" ; protein_id "ENSP00000262039.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIK3C3--NAF1^ENST00000262039.9" ; transcript_name "PIK3C3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PIK3C3--NAF1 HAVANA gene 45832 59630 . + . FI_gene_label "NAF1^ENSG00000145414.9" ; ID "PIK3C3--NAF1^NAF1^ENSG00000145414.9" ; ccdsid "CCDS3803.1" ; exon_id "ENSE00002064568.1" ; exon_number 1 ; gene_id "PIK3C3--NAF1^NAF1^ENSG00000145414.9" ; gene_name NAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161370.3" ; havana_transcript "OTTHUMT00000364684.2" ; hgnc_id "HGNC:25126" ; level 2 ; orig_coord_info "chr4,163166363,163166727,-" ; protein_id "ENSP00000274054.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PIK3C3--NAF1^ENST00000274054.3" ; transcript_name "NAF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PIK3C3--NAF1 HAVANA mRNA 45832 59630 . + . FI_gene_label "NAF1^ENSG00000145414.9" ; ID "PIK3C3--NAF1^ENST00000274054.3" ; Parent "PIK3C3--NAF1^NAF1^ENSG00000145414.9" ; ccdsid "CCDS3803.1" ; exon_id "ENSE00002064568.1" ; exon_number 1 ; gene_id "PIK3C3--NAF1^NAF1^ENSG00000145414.9" ; gene_name NAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161370.3" ; havana_transcript "OTTHUMT00000364684.2" ; hgnc_id "HGNC:25126" ; level 2 ; orig_coord_info "chr4,163166363,163166727,-" ; protein_id "ENSP00000274054.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PIK3C3--NAF1^ENST00000274054.3" ; transcript_name "NAF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPTC7--TCTN1 HAVANA gene 1001 11685 . + . FI_gene_label "PPTC7^ENSG00000196850.6" ; ID "PPTC7--TCTN1^PPTC7^ENSG00000196850.6" ; ccdsid "CCDS9149.1" ; exon_id "ENSE00001512714.3" ; exon_number 1 ; gene_id "PPTC7--TCTN1^PPTC7^ENSG00000196850.6" ; gene_name PPTC7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169529.3" ; havana_transcript "OTTHUMT00000404635.3" ; hgnc_id "HGNC:30695" ; level 2 ; orig_coord_info "chr12,110582809,110583031,-" ; protein_id "ENSP00000346255.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPTC7--TCTN1^ENST00000354300.5" ; transcript_name "PPTC7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPTC7--TCTN1 HAVANA mRNA 1001 11685 . + . FI_gene_label "PPTC7^ENSG00000196850.6" ; ID "PPTC7--TCTN1^ENST00000354300.5" ; Parent "PPTC7--TCTN1^PPTC7^ENSG00000196850.6" ; ccdsid "CCDS9149.1" ; exon_id "ENSE00001512714.3" ; exon_number 1 ; gene_id "PPTC7--TCTN1^PPTC7^ENSG00000196850.6" ; gene_name PPTC7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169529.3" ; havana_transcript "OTTHUMT00000404635.3" ; hgnc_id "HGNC:30695" ; level 2 ; orig_coord_info "chr12,110582809,110583031,-" ; protein_id "ENSP00000346255.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPTC7--TCTN1^ENST00000354300.5" ; transcript_name "PPTC7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPTC7--TCTN1 HAVANA gene 14772 37391 . + . FI_gene_label "TCTN1^ENSG00000204852.17" ; ID "PPTC7--TCTN1^TCTN1^ENSG00000204852.17" ; exon_id "ENSE00003558910.1" ; exon_number 1 ; gene_id "PPTC7--TCTN1^TCTN1^ENSG00000204852.17" ; gene_name TCTN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150051.9" ; hgnc_id "HGNC:26113" ; level 2 ; orig_coord_info "chr12,110614183,110614402,+" ; protein_id "ENSP00000366882.5" ; tag RNA_Seq_supported_only basic ; transcript_id "PPTC7--TCTN1^ENST00000377654.5" ; transcript_name "TCTN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
PPTC7--TCTN1 HAVANA mRNA 14772 37391 . + . FI_gene_label "TCTN1^ENSG00000204852.17" ; ID "PPTC7--TCTN1^ENST00000377654.5" ; Parent "PPTC7--TCTN1^TCTN1^ENSG00000204852.17" ; exon_id "ENSE00003558910.1" ; exon_number 1 ; gene_id "PPTC7--TCTN1^TCTN1^ENSG00000204852.17" ; gene_name TCTN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150051.9" ; hgnc_id "HGNC:26113" ; level 2 ; orig_coord_info "chr12,110614183,110614402,+" ; protein_id "ENSP00000366882.5" ; tag RNA_Seq_supported_only basic ; transcript_id "PPTC7--TCTN1^ENST00000377654.5" ; transcript_name "TCTN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPN21--CEP128 HAVANA gene 34383 48876 . + . FI_gene_label "CEP128^ENSG00000100629.17" ; ID "PTPN21--CEP128^CEP128^ENSG00000100629.17" ; exon_id "ENSE00003508511.1" ; exon_number 3 ; gene_id "PTPN21--CEP128^CEP128^ENSG00000100629.17" ; gene_name CEP128 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171442.5" ; havana_transcript "OTTHUMT00000413420.1" ; hgnc_id "HGNC:20359" ; level 2 ; orig_coord_info "chr14,80916401,80916547,-" ; protein_id "ENSP00000216517.6" ; tag basic appris_alternative_2 ; transcript_id "PTPN21--CEP128^ENST00000216517.10" ; transcript_name "CEP128-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPN21--CEP128 HAVANA mRNA 34383 48876 . + . FI_gene_label "CEP128^ENSG00000100629.17" ; ID "PTPN21--CEP128^ENST00000216517.10" ; Parent "PTPN21--CEP128^CEP128^ENSG00000100629.17" ; exon_id "ENSE00003508511.1" ; exon_number 3 ; gene_id "PTPN21--CEP128^CEP128^ENSG00000100629.17" ; gene_name CEP128 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171442.5" ; havana_transcript "OTTHUMT00000413420.1" ; hgnc_id "HGNC:20359" ; level 2 ; orig_coord_info "chr14,80916401,80916547,-" ; protein_id "ENSP00000216517.6" ; tag basic appris_alternative_2 ; transcript_id "PTPN21--CEP128^ENST00000216517.10" ; transcript_name "CEP128-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPN21--CEP128 ENSEMBL gene 3225 26903 . + . FI_gene_label "PTPN21^ENSG00000070778.13" ; ID "PTPN21--CEP128^PTPN21^ENSG00000070778.13" ; ccdsid "CCDS9884.1" ; exon_id "ENSE00001198151.5" ; exon_number 1 ; gene_id "PTPN21--CEP128^PTPN21^ENSG00000070778.13" ; gene_name PTPN21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170766.2" ; hgnc_id "HGNC:9651" ; level 3 ; orig_coord_info "chr14,88550238,88550417,-" ; protein_id "ENSP00000330276.3" ; tag basic appris_principal_1 CCDS ; transcript_id "PTPN21--CEP128^ENST00000328736.7" ; transcript_name "PTPN21-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPN21--CEP128 ENSEMBL mRNA 3225 26903 . + . FI_gene_label "PTPN21^ENSG00000070778.13" ; ID "PTPN21--CEP128^ENST00000328736.7" ; Parent "PTPN21--CEP128^PTPN21^ENSG00000070778.13" ; ccdsid "CCDS9884.1" ; exon_id "ENSE00001198151.5" ; exon_number 1 ; gene_id "PTPN21--CEP128^PTPN21^ENSG00000070778.13" ; gene_name PTPN21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170766.2" ; hgnc_id "HGNC:9651" ; level 3 ; orig_coord_info "chr14,88550238,88550417,-" ; protein_id "ENSP00000330276.3" ; tag basic appris_principal_1 CCDS ; transcript_id "PTPN21--CEP128^ENST00000328736.7" ; transcript_name "PTPN21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPSAP52--HMGA2 HAVANA gene 7036 17922 . + . FI_gene_label "HMGA2^ENSG00000149948.14" ; ID "RPSAP52--HMGA2^HMGA2^ENSG00000149948.14" ; ccdsid "CCDS31854.1" ; exon_id "ENSE00001242304.6" ; exon_number 1 ; gene_id "RPSAP52--HMGA2^HMGA2^ENSG00000149948.14" ; gene_name HMGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168936.2" ; havana_transcript "OTTHUMT00000401660.1" ; hgnc_id "HGNC:5009" ; level 2 ; orig_coord_info "chr12,65825271,65825381,+" ; protein_id "ENSP00000346658.3" ; tag basic CCDS ; transcript_id "RPSAP52--HMGA2^ENST00000354636.7" ; transcript_name "HMGA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPSAP52--HMGA2 HAVANA mRNA 7036 17922 . + . FI_gene_label "HMGA2^ENSG00000149948.14" ; ID "RPSAP52--HMGA2^ENST00000354636.7" ; Parent "RPSAP52--HMGA2^HMGA2^ENSG00000149948.14" ; ccdsid "CCDS31854.1" ; exon_id "ENSE00001242304.6" ; exon_number 1 ; gene_id "RPSAP52--HMGA2^HMGA2^ENSG00000149948.14" ; gene_name HMGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168936.2" ; havana_transcript "OTTHUMT00000401660.1" ; hgnc_id "HGNC:5009" ; level 2 ; orig_coord_info "chr12,65825271,65825381,+" ; protein_id "ENSP00000346658.3" ; tag basic CCDS ; transcript_id "RPSAP52--HMGA2^ENST00000354636.7" ; transcript_name "HMGA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^ENST00000465254.2" ; Parent "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^ENST00000465909.2" ; Parent "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED5--DR1 HAVANA gene 17240 22714 . + . FI_gene_label "DR1^ENSG00000117505.13" ; ID "TMED5--DR1^DR1^ENSG00000117505.13" ; ccdsid "CCDS744.1" ; exon_id "ENSE00001452215.1" ; exon_number 2 ; gene_id "TMED5--DR1^DR1^ENSG00000117505.13" ; gene_name DR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010862.3" ; havana_transcript "OTTHUMT00000029977.1" ; hgnc_id "HGNC:3017" ; level 2 ; orig_coord_info "chr1,93346646,93346865,+" ; protein_id "ENSP00000359290.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "TMED5--DR1^ENST00000370267.1" ; transcript_name "DR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
TMED5--DR1 HAVANA mRNA 17240 22714 . + . FI_gene_label "DR1^ENSG00000117505.13" ; ID "TMED5--DR1^ENST00000370267.1" ; Parent "TMED5--DR1^DR1^ENSG00000117505.13" ; ccdsid "CCDS744.1" ; exon_id "ENSE00001452215.1" ; exon_number 2 ; gene_id "TMED5--DR1^DR1^ENSG00000117505.13" ; gene_name DR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010862.3" ; havana_transcript "OTTHUMT00000029977.1" ; hgnc_id "HGNC:3017" ; level 2 ; orig_coord_info "chr1,93346646,93346865,+" ; protein_id "ENSP00000359290.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "TMED5--DR1^ENST00000370267.1" ; transcript_name "DR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TMED5--DR1 HAVANA gene 1256 8060 . + . FI_gene_label "TMED5^ENSG00000117500.13" ; ID "TMED5--DR1^TMED5^ENSG00000117500.13" ; exon_id "ENSE00001452268.1" ; exon_number 1 ; gene_id "TMED5--DR1^TMED5^ENSG00000117500.13" ; gene_name TMED5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010162.5" ; havana_transcript "OTTHUMT00000029237.1" ; hgnc_id "HGNC:24251" ; level 2 ; orig_coord_info "chr1,93180054,93180242,-" ; protein_id "ENSP00000359303.1" ; tag basic ; transcript_id "TMED5--DR1^ENST00000370280.1" ; transcript_name "TMED5-201" ; transcript_support_level 2 ; transcript_type protein_coding
TMED5--DR1 HAVANA mRNA 1256 8060 . + . FI_gene_label "TMED5^ENSG00000117500.13" ; ID "TMED5--DR1^ENST00000370280.1" ; Parent "TMED5--DR1^TMED5^ENSG00000117500.13" ; exon_id "ENSE00001452268.1" ; exon_number 1 ; gene_id "TMED5--DR1^TMED5^ENSG00000117500.13" ; gene_name TMED5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010162.5" ; havana_transcript "OTTHUMT00000029237.1" ; hgnc_id "HGNC:24251" ; level 2 ; orig_coord_info "chr1,93180054,93180242,-" ; protein_id "ENSP00000359303.1" ; tag basic ; transcript_id "TMED5--DR1^ENST00000370280.1" ; transcript_name "TMED5-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^ENST00000427199.3" ; Parent "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^ENST00000456936.4" ; Parent "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM132B--TDG HAVANA gene 30390 41107 . + . FI_gene_label "TDG^ENSG00000139372.15" ; ID "TMEM132B--TDG^TDG^ENSG00000139372.15" ; exon_id "ENSE00002286316.1" ; exon_number 2 ; gene_id "TMEM132B--TDG^TDG^ENSG00000139372.15" ; gene_name TDG ; gene_type protein_coding ; havana_gene "OTTHUMG00000168418.4" ; havana_transcript "OTTHUMT00000399676.1" ; hgnc_id "HGNC:11700" ; level 1 ; orig_coord_info "chr12,103973023,103973033,+" ; protein_id "ENSP00000266775.9" ; tag basic appris_alternative_2 exp_conf ; transcript_id "TMEM132B--TDG^ENST00000266775.13" ; transcript_name "TDG-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM132B--TDG HAVANA mRNA 30390 41107 . + . FI_gene_label "TDG^ENSG00000139372.15" ; ID "TMEM132B--TDG^ENST00000266775.13" ; Parent "TMEM132B--TDG^TDG^ENSG00000139372.15" ; exon_id "ENSE00002286316.1" ; exon_number 2 ; gene_id "TMEM132B--TDG^TDG^ENSG00000139372.15" ; gene_name TDG ; gene_type protein_coding ; havana_gene "OTTHUMG00000168418.4" ; havana_transcript "OTTHUMT00000399676.1" ; hgnc_id "HGNC:11700" ; level 1 ; orig_coord_info "chr12,103973023,103973033,+" ; protein_id "ENSP00000266775.9" ; tag basic appris_alternative_2 exp_conf ; transcript_id "TMEM132B--TDG^ENST00000266775.13" ; transcript_name "TDG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM132B--TDG HAVANA gene 2097 27360 . + . FI_gene_label "TMEM132B^ENSG00000139364.10" ; ID "TMEM132B--TDG^TMEM132B^ENSG00000139364.10" ; ccdsid "CCDS41859.1" ; exon_id "ENSE00001528357.1" ; exon_number 1 ; gene_id "TMEM132B--TDG^TMEM132B^ENSG00000139364.10" ; gene_name TMEM132B ; gene_type protein_coding ; havana_gene "OTTHUMG00000168520.2" ; havana_transcript "OTTHUMT00000400043.1" ; hgnc_id "HGNC:29397" ; level 2 ; orig_coord_info "chr12,125326624,125326675,+" ; protein_id "ENSP00000299308.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TMEM132B--TDG^ENST00000299308.7" ; transcript_name "TMEM132B-201" ; transcript_support_level 5 ; transcript_type protein_coding
TMEM132B--TDG HAVANA mRNA 2097 27360 . + . FI_gene_label "TMEM132B^ENSG00000139364.10" ; ID "TMEM132B--TDG^ENST00000299308.7" ; Parent "TMEM132B--TDG^TMEM132B^ENSG00000139364.10" ; ccdsid "CCDS41859.1" ; exon_id "ENSE00001528357.1" ; exon_number 1 ; gene_id "TMEM132B--TDG^TMEM132B^ENSG00000139364.10" ; gene_name TMEM132B ; gene_type protein_coding ; havana_gene "OTTHUMG00000168520.2" ; havana_transcript "OTTHUMT00000400043.1" ; hgnc_id "HGNC:29397" ; level 2 ; orig_coord_info "chr12,125326624,125326675,+" ; protein_id "ENSP00000299308.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TMEM132B--TDG^ENST00000299308.7" ; transcript_name "TMEM132B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TMEM233--AC073348.2 HAVANA gene 1001 6840 . + . FI_gene_label "TMEM233^ENSG00000224982.4" ; ID "TMEM233--AC073348.2^TMEM233^ENSG00000224982.4" ; ccdsid "CCDS44995.1" ; exon_id "ENSE00001724366.2" ; exon_number 1 ; gene_id "TMEM233--AC073348.2^TMEM233^ENSG00000224982.4" ; gene_name TMEM233 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168944.4" ; havana_transcript "OTTHUMT00000401684.3" ; hgnc_id "HGNC:37219" ; level 2 ; orig_coord_info "chr12,119593849,119594034,+" ; protein_id "ENSP00000403130.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM233--AC073348.2^ENST00000426426.3" ; transcript_name "TMEM233-201" ; transcript_support_level 2 ; transcript_type protein_coding
TMEM233--AC073348.2 HAVANA mRNA 1001 6840 . + . FI_gene_label "TMEM233^ENSG00000224982.4" ; ID "TMEM233--AC073348.2^ENST00000426426.3" ; Parent "TMEM233--AC073348.2^TMEM233^ENSG00000224982.4" ; ccdsid "CCDS44995.1" ; exon_id "ENSE00001724366.2" ; exon_number 1 ; gene_id "TMEM233--AC073348.2^TMEM233^ENSG00000224982.4" ; gene_name TMEM233 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168944.4" ; havana_transcript "OTTHUMT00000401684.3" ; hgnc_id "HGNC:37219" ; level 2 ; orig_coord_info "chr12,119593849,119594034,+" ; protein_id "ENSP00000403130.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM233--AC073348.2^ENST00000426426.3" ; transcript_name "TMEM233-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TMEM233--PPP1R3A HAVANA gene 11136 17561 . + . FI_gene_label "PPP1R3A^ENSG00000154415.8" ; ID "TMEM233--PPP1R3A^PPP1R3A^ENSG00000154415.8" ; ccdsid "CCDS5759.1" ; exon_id "ENSE00001015769.6" ; exon_number 1 ; gene_id "TMEM233--PPP1R3A^PPP1R3A^ENSG00000154415.8" ; gene_name PPP1R3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000156944.3" ; havana_transcript "OTTHUMT00000346724.2" ; hgnc_id "HGNC:9291" ; level 2 ; orig_coord_info "chr7,113918215,113918996,-" ; protein_id "ENSP00000284601.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM233--PPP1R3A^ENST00000284601.4" ; transcript_name "PPP1R3A-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM233--PPP1R3A HAVANA mRNA 11136 17561 . + . FI_gene_label "PPP1R3A^ENSG00000154415.8" ; ID "TMEM233--PPP1R3A^ENST00000284601.4" ; Parent "TMEM233--PPP1R3A^PPP1R3A^ENSG00000154415.8" ; ccdsid "CCDS5759.1" ; exon_id "ENSE00001015769.6" ; exon_number 1 ; gene_id "TMEM233--PPP1R3A^PPP1R3A^ENSG00000154415.8" ; gene_name PPP1R3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000156944.3" ; havana_transcript "OTTHUMT00000346724.2" ; hgnc_id "HGNC:9291" ; level 2 ; orig_coord_info "chr7,113918215,113918996,-" ; protein_id "ENSP00000284601.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM233--PPP1R3A^ENST00000284601.4" ; transcript_name "PPP1R3A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM233--PPP1R3A HAVANA gene 1001 6840 . + . FI_gene_label "TMEM233^ENSG00000224982.4" ; ID "TMEM233--PPP1R3A^TMEM233^ENSG00000224982.4" ; ccdsid "CCDS44995.1" ; exon_id "ENSE00001724366.2" ; exon_number 1 ; gene_id "TMEM233--PPP1R3A^TMEM233^ENSG00000224982.4" ; gene_name TMEM233 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168944.4" ; havana_transcript "OTTHUMT00000401684.3" ; hgnc_id "HGNC:37219" ; level 2 ; orig_coord_info "chr12,119593849,119594034,+" ; protein_id "ENSP00000403130.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM233--PPP1R3A^ENST00000426426.3" ; transcript_name "TMEM233-201" ; transcript_support_level 2 ; transcript_type protein_coding
TMEM233--PPP1R3A HAVANA mRNA 1001 6840 . + . FI_gene_label "TMEM233^ENSG00000224982.4" ; ID "TMEM233--PPP1R3A^ENST00000426426.3" ; Parent "TMEM233--PPP1R3A^TMEM233^ENSG00000224982.4" ; ccdsid "CCDS44995.1" ; exon_id "ENSE00001724366.2" ; exon_number 1 ; gene_id "TMEM233--PPP1R3A^TMEM233^ENSG00000224982.4" ; gene_name TMEM233 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168944.4" ; havana_transcript "OTTHUMT00000401684.3" ; hgnc_id "HGNC:37219" ; level 2 ; orig_coord_info "chr12,119593849,119594034,+" ; protein_id "ENSP00000403130.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM233--PPP1R3A^ENST00000426426.3" ; transcript_name "TMEM233-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TPTE--BAGE2 HAVANA gene 1023 23850 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "TPTE--BAGE2^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
TPTE--BAGE2 HAVANA mRNA 1023 23850 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "TPTE--BAGE2^ENST00000427445.6" ; Parent "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "TPTE--BAGE2^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC8--AL352955.1 HAVANA gene 1504 19605 . + . FI_gene_label "TTC8^ENSG00000165533.19" ; ID "TTC8--AL352955.1^TTC8^ENSG00000165533.19" ; ccdsid "CCDS73674.1" ; exon_id "ENSE00002317800.1" ; exon_number 1 ; gene_id "TTC8--AL352955.1^TTC8^ENSG00000165533.19" ; gene_name TTC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170884.3" ; havana_transcript "OTTHUMT00000410864.1" ; hgnc_id "HGNC:20087" ; level 2 ; orig_coord_info "chr14,88824708,88824821,+" ; protein_id "ENSP00000337653.6" ; tag basic CCDS ; transcript_id "TTC8--AL352955.1^ENST00000338104.10" ; transcript_name "TTC8-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC8--AL352955.1 HAVANA mRNA 1504 19605 . + . FI_gene_label "TTC8^ENSG00000165533.19" ; ID "TTC8--AL352955.1^ENST00000338104.10" ; Parent "TTC8--AL352955.1^TTC8^ENSG00000165533.19" ; ccdsid "CCDS73674.1" ; exon_id "ENSE00002317800.1" ; exon_number 1 ; gene_id "TTC8--AL352955.1^TTC8^ENSG00000165533.19" ; gene_name TTC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170884.3" ; havana_transcript "OTTHUMT00000410864.1" ; hgnc_id "HGNC:20087" ; level 2 ; orig_coord_info "chr14,88824708,88824821,+" ; protein_id "ENSP00000337653.6" ; tag basic CCDS ; transcript_id "TTC8--AL352955.1^ENST00000338104.10" ; transcript_name "TTC8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC8--AL358292.1 HAVANA gene 1504 19605 . + . FI_gene_label "TTC8^ENSG00000165533.19" ; ID "TTC8--AL358292.1^TTC8^ENSG00000165533.19" ; ccdsid "CCDS73674.1" ; exon_id "ENSE00002317800.1" ; exon_number 1 ; gene_id "TTC8--AL358292.1^TTC8^ENSG00000165533.19" ; gene_name TTC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170884.3" ; havana_transcript "OTTHUMT00000410864.1" ; hgnc_id "HGNC:20087" ; level 2 ; orig_coord_info "chr14,88824708,88824821,+" ; protein_id "ENSP00000337653.6" ; tag basic CCDS ; transcript_id "TTC8--AL358292.1^ENST00000338104.10" ; transcript_name "TTC8-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC8--AL358292.1 HAVANA mRNA 1504 19605 . + . FI_gene_label "TTC8^ENSG00000165533.19" ; ID "TTC8--AL358292.1^ENST00000338104.10" ; Parent "TTC8--AL358292.1^TTC8^ENSG00000165533.19" ; ccdsid "CCDS73674.1" ; exon_id "ENSE00002317800.1" ; exon_number 1 ; gene_id "TTC8--AL358292.1^TTC8^ENSG00000165533.19" ; gene_name TTC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170884.3" ; havana_transcript "OTTHUMT00000410864.1" ; hgnc_id "HGNC:20087" ; level 2 ; orig_coord_info "chr14,88824708,88824821,+" ; protein_id "ENSP00000337653.6" ; tag basic CCDS ; transcript_id "TTC8--AL358292.1^ENST00000338104.10" ; transcript_name "TTC8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXLNG--AC068472.1 HAVANA gene 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--AC068472.1^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--AC068472.1^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--AC068472.1^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXLNG--AC068472.1 HAVANA mRNA 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--AC068472.1^ENST00000380122.10" ; Parent "TXLNG--AC068472.1^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--AC068472.1^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--AC068472.1^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXLNG--AC100767.2 HAVANA gene 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--AC100767.2^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--AC100767.2^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--AC100767.2^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXLNG--AC100767.2 HAVANA mRNA 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--AC100767.2^ENST00000380122.10" ; Parent "TXLNG--AC100767.2^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--AC100767.2^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--AC100767.2^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXLNG--LINC02718 HAVANA gene 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--LINC02718^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--LINC02718^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--LINC02718^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXLNG--LINC02718 HAVANA mRNA 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--LINC02718^ENST00000380122.10" ; Parent "TXLNG--LINC02718^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--LINC02718^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--LINC02718^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXLNG--LINC02726 HAVANA gene 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--LINC02726^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--LINC02726^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--LINC02726^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXLNG--LINC02726 HAVANA mRNA 1035 14455 . + . FI_gene_label "TXLNG^ENSG00000086712.13" ; ID "TXLNG--LINC02726^ENST00000380122.10" ; Parent "TXLNG--LINC02726^TXLNG^ENSG00000086712.13" ; ccdsid "CCDS14178.1" ; exon_id "ENSE00001937459.2" ; exon_number 1 ; gene_id "TXLNG--LINC02726^TXLNG^ENSG00000086712.13" ; gene_name TXLNG ; gene_type protein_coding ; havana_gene "OTTHUMG00000021196.2" ; havana_transcript "OTTHUMT00000055912.2" ; hgnc_id "HGNC:18578" ; level 2 ; orig_coord_info "chrX,16786488,16786589,+" ; protein_id "ENSP00000369465.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXLNG--LINC02726^ENST00000380122.10" ; transcript_name "TXLNG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VCL--ADK HAVANA gene 2974 32744 . + . FI_gene_label "VCL^ENSG00000035403.18" ; ID "VCL--ADK^VCL^ENSG00000035403.18" ; ccdsid "CCDS7341.1" ; exon_id "ENSE00000000338.2" ; exon_number 1 ; gene_id "VCL--ADK^VCL^ENSG00000035403.18" ; gene_name VCL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018498.4" ; havana_transcript "OTTHUMT00000048752.3" ; hgnc_id "HGNC:12665" ; level 2 ; orig_coord_info "chr10,73998208,73998375,+" ; protein_id "ENSP00000211998.5" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "VCL--ADK^ENST00000211998.10" ; transcript_name "VCL-201" ; transcript_support_level 1 ; transcript_type protein_coding
VCL--ADK HAVANA mRNA 2974 32744 . + . FI_gene_label "VCL^ENSG00000035403.18" ; ID "VCL--ADK^ENST00000211998.10" ; Parent "VCL--ADK^VCL^ENSG00000035403.18" ; ccdsid "CCDS7341.1" ; exon_id "ENSE00000000338.2" ; exon_number 1 ; gene_id "VCL--ADK^VCL^ENSG00000035403.18" ; gene_name VCL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018498.4" ; havana_transcript "OTTHUMT00000048752.3" ; hgnc_id "HGNC:12665" ; level 2 ; orig_coord_info "chr10,73998208,73998375,+" ; protein_id "ENSP00000211998.5" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "VCL--ADK^ENST00000211998.10" ; transcript_name "VCL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VCL--ADK HAVANA gene 36961 58453 . + . FI_gene_label "ADK^ENSG00000156110.15" ; ID "VCL--ADK^ADK^ENSG00000156110.15" ; exon_id "ENSE00001248887.4" ; exon_number 1 ; gene_id "VCL--ADK^ADK^ENSG00000156110.15" ; gene_name ADK ; gene_type protein_coding ; havana_gene "OTTHUMG00000018506.4" ; havana_transcript "OTTHUMT00000529318.1" ; hgnc_id "HGNC:257" ; level 2 ; orig_coord_info "chr10,74151279,74151343,+" ; protein_id "ENSP00000286621.3" ; tag RNA_Seq_supported_only basic ; transcript_id "VCL--ADK^ENST00000286621.7" ; transcript_name "ADK-201" ; transcript_support_level 1 ; transcript_type protein_coding
VCL--ADK HAVANA mRNA 36961 58453 . + . FI_gene_label "ADK^ENSG00000156110.15" ; ID "VCL--ADK^ENST00000286621.7" ; Parent "VCL--ADK^ADK^ENSG00000156110.15" ; exon_id "ENSE00001248887.4" ; exon_number 1 ; gene_id "VCL--ADK^ADK^ENSG00000156110.15" ; gene_name ADK ; gene_type protein_coding ; havana_gene "OTTHUMG00000018506.4" ; havana_transcript "OTTHUMT00000529318.1" ; hgnc_id "HGNC:257" ; level 2 ; orig_coord_info "chr10,74151279,74151343,+" ; protein_id "ENSP00000286621.3" ; tag RNA_Seq_supported_only basic ; transcript_id "VCL--ADK^ENST00000286621.7" ; transcript_name "ADK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF717--ROBO2 HAVANA gene 24491 64676 . + . FI_gene_label "ROBO2^ENSG00000185008.17" ; ID "ZNF717--ROBO2^ROBO2^ENSG00000185008.17" ; exon_id "ENSE00001316755.3" ; exon_number 1 ; gene_id "ZNF717--ROBO2^ROBO2^ENSG00000185008.17" ; gene_name ROBO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158935.9" ; havana_transcript "OTTHUMT00000352601.1" ; hgnc_id "HGNC:10250" ; level 1 ; orig_coord_info "chr3,77040786,77040846,+" ; protein_id "ENSP00000327536.8" ; tag basic appris_alternative_2 exp_conf ; transcript_id "ZNF717--ROBO2^ENST00000332191.12" ; transcript_name "ROBO2-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZNF717--ROBO2 HAVANA mRNA 24491 64676 . + . FI_gene_label "ROBO2^ENSG00000185008.17" ; ID "ZNF717--ROBO2^ENST00000332191.12" ; Parent "ZNF717--ROBO2^ROBO2^ENSG00000185008.17" ; exon_id "ENSE00001316755.3" ; exon_number 1 ; gene_id "ZNF717--ROBO2^ROBO2^ENSG00000185008.17" ; gene_name ROBO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158935.9" ; havana_transcript "OTTHUMT00000352601.1" ; hgnc_id "HGNC:10250" ; level 1 ; orig_coord_info "chr3,77040786,77040846,+" ; protein_id "ENSP00000327536.8" ; tag basic appris_alternative_2 exp_conf ; transcript_id "ZNF717--ROBO2^ENST00000332191.12" ; transcript_name "ROBO2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZNF717--ROBO2 HAVANA gene 1526 5503 . + . FI_gene_label "ZNF717^ENSG00000227124.11" ; ID "ZNF717--ROBO2^ZNF717^ENSG00000227124.11" ; exon_id "ENSE00003513755.1" ; exon_number 2 ; gene_id "ZNF717--ROBO2^ZNF717^ENSG00000227124.11" ; gene_name ZNF717 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158965.9" ; havana_transcript "OTTHUMT00000352768.3" ; hgnc_id "HGNC:29448" ; level 2 ; orig_coord_info "chr3,75783306,75783362,-" ; protein_id "ENSP00000418187.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "ZNF717--ROBO2^ENST00000468296.5" ; transcript_name "ZNF717-201" ; transcript_support_level 3 ; transcript_type protein_coding
ZNF717--ROBO2 HAVANA mRNA 1526 5503 . + . FI_gene_label "ZNF717^ENSG00000227124.11" ; ID "ZNF717--ROBO2^ENST00000468296.5" ; Parent "ZNF717--ROBO2^ZNF717^ENSG00000227124.11" ; exon_id "ENSE00003513755.1" ; exon_number 2 ; gene_id "ZNF717--ROBO2^ZNF717^ENSG00000227124.11" ; gene_name ZNF717 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158965.9" ; havana_transcript "OTTHUMT00000352768.3" ; hgnc_id "HGNC:29448" ; level 2 ; orig_coord_info "chr3,75783306,75783362,-" ; protein_id "ENSP00000418187.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "ZNF717--ROBO2^ENST00000468296.5" ; transcript_name "ZNF717-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
AC006453.1--FAM230C HAVANA gene 11227 20685 . + . FI_gene_label "FAM230C^ENSG00000279516.2" ; ID "AC006453.1--FAM230C^FAM230C^ENSG00000279516.2" ; exon_id "ENSE00003758598.1" ; exon_number 1 ; gene_id "AC006453.1--FAM230C^FAM230C^ENSG00000279516.2" ; gene_name FAM230C ; gene_type lncRNA ; havana_gene "OTTHUMG00000189381.2" ; havana_transcript "OTTHUMT00000479522.1" ; hgnc_id "HGNC:24482" ; level 2 ; orig_coord_info "chr13,18195297,18195411,+" ; tag basic ; transcript_id "AC006453.1--FAM230C^ENST00000623511.1" ; transcript_name "FAM230C-201" ; transcript_support_level 1 ; transcript_type lncRNA
AC006453.1--FAM230C HAVANA RNA 11227 20685 . + . FI_gene_label "FAM230C^ENSG00000279516.2" ; ID "AC006453.1--FAM230C^ENST00000623511.1" ; Parent "AC006453.1--FAM230C^FAM230C^ENSG00000279516.2" ; exon_id "ENSE00003758598.1" ; exon_number 1 ; gene_id "AC006453.1--FAM230C^FAM230C^ENSG00000279516.2" ; gene_name FAM230C ; gene_type lncRNA ; havana_gene "OTTHUMG00000189381.2" ; havana_transcript "OTTHUMT00000479522.1" ; hgnc_id "HGNC:24482" ; level 2 ; orig_coord_info "chr13,18195297,18195411,+" ; tag basic ; transcript_id "AC006453.1--FAM230C^ENST00000623511.1" ; transcript_name "FAM230C-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
AC006453.1--FAM230C HAVANA gene 1001 8226 . + . FI_gene_label "AC006453.1^ENSG00000283132.1" ; ID "AC006453.1--FAM230C^AC006453.1^ENSG00000283132.1" ; exon_id "ENSE00003797054.1" ; exon_number 1 ; gene_id "AC006453.1--FAM230C^AC006453.1^ENSG00000283132.1" ; gene_name "AC006453.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000191643.1" ; havana_transcript "OTTHUMT00000489004.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr2,89640438,89640635,-" ; tag basic ; transcript_id "AC006453.1--FAM230C^ENST00000636037.1" ; transcript_name "AC006453.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC006453.1--FAM230C HAVANA RNA 1001 8226 . + . FI_gene_label "AC006453.1^ENSG00000283132.1" ; ID "AC006453.1--FAM230C^ENST00000636037.1" ; Parent "AC006453.1--FAM230C^AC006453.1^ENSG00000283132.1" ; exon_id "ENSE00003797054.1" ; exon_number 1 ; gene_id "AC006453.1--FAM230C^AC006453.1^ENSG00000283132.1" ; gene_name "AC006453.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000191643.1" ; havana_transcript "OTTHUMT00000489004.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr2,89640438,89640635,-" ; tag basic ; transcript_id "AC006453.1--FAM230C^ENST00000636037.1" ; transcript_name "AC006453.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
ALK--AC009413.1 HAVANA gene 39006 43265 . + . FI_gene_label "AC009413.1^ENSG00000287145.1" ; ID "ALK--AC009413.1^AC009413.1^ENSG00000287145.1" ; exon_id "ENSE00003873406.1" ; exon_number 1 ; gene_id "ALK--AC009413.1^AC009413.1^ENSG00000287145.1" ; gene_name "AC009413.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195835.1" ; havana_transcript "OTTHUMT00000528965.1" ; level 2 ; orig_coord_info "chr2,41716133,41716241,+" ; tag basic TAGENE ; transcript_id "ALK--AC009413.1^ENST00000660664.1" ; transcript_name "AC009413.1-201" ; transcript_type lncRNA
ALK--AC009413.1 HAVANA RNA 39006 43265 . + . FI_gene_label "AC009413.1^ENSG00000287145.1" ; ID "ALK--AC009413.1^ENST00000660664.1" ; Parent "ALK--AC009413.1^AC009413.1^ENSG00000287145.1" ; exon_id "ENSE00003873406.1" ; exon_number 1 ; gene_id "ALK--AC009413.1^AC009413.1^ENSG00000287145.1" ; gene_name "AC009413.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195835.1" ; havana_transcript "OTTHUMT00000528965.1" ; level 2 ; orig_coord_info "chr2,41716133,41716241,+" ; tag basic TAGENE ; transcript_id "ALK--AC009413.1^ENST00000660664.1" ; transcript_name "AC009413.1-201" ; transcript_type lncRNA
L1 and L2 created:
ALK--HNRNPA1P57 HAVANA gene 39006 41535 . + . FI_gene_label "HNRNPA1P57^ENSG00000237442.3" ; ID "ALK--HNRNPA1P57^HNRNPA1P57^ENSG00000237442.3" ; exon_id "ENSE00001703605.1" ; exon_number 1 ; gene_id "ALK--HNRNPA1P57^HNRNPA1P57^ENSG00000237442.3" ; gene_name HNRNPA1P57 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000152297.3" ; havana_transcript "OTTHUMT00000470771.1" ; hgnc_id "HGNC:48787" ; level 2 ; orig_coord_info "chr2,41143780,41143958,+" ; tag basic ; transcript_id "ALK--HNRNPA1P57^ENST00000431359.1" ; transcript_name "HNRNPA1P57-201" ; transcript_support_level 4 ; transcript_type processed_transcript
ALK--HNRNPA1P57 HAVANA RNA 39006 41535 . + . FI_gene_label "HNRNPA1P57^ENSG00000237442.3" ; ID "ALK--HNRNPA1P57^ENST00000431359.1" ; Parent "ALK--HNRNPA1P57^HNRNPA1P57^ENSG00000237442.3" ; exon_id "ENSE00001703605.1" ; exon_number 1 ; gene_id "ALK--HNRNPA1P57^HNRNPA1P57^ENSG00000237442.3" ; gene_name HNRNPA1P57 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000152297.3" ; havana_transcript "OTTHUMT00000470771.1" ; hgnc_id "HGNC:48787" ; level 2 ; orig_coord_info "chr2,41143780,41143958,+" ; tag basic ; transcript_id "ALK--HNRNPA1P57^ENST00000431359.1" ; transcript_name "HNRNPA1P57-201" ; transcript_support_level 4 ; transcript_type processed_transcript
L1 and L2 created:
ARFGEF1--NDUFS5P6 HAVANA gene 47024 47318 . + . FI_gene_label "NDUFS5P6^ENSG00000255531.1" ; ID "ARFGEF1--NDUFS5P6^NDUFS5P6^ENSG00000255531.1" ; exon_id "ENSE00002161646.1" ; exon_number 1 ; gene_id "ARFGEF1--NDUFS5P6^NDUFS5P6^ENSG00000255531.1" ; gene_name NDUFS5P6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000165217.1" ; havana_transcript "OTTHUMT00000382726.1" ; hgnc_id "HGNC:44044" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,67849044,67849338,+" ; tag pseudo_consens basic ; transcript_id "ARFGEF1--NDUFS5P6^ENST00000529136.1" ; transcript_name "NDUFS5P6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ARFGEF1--NDUFS5P6 HAVANA RNA 47024 47318 . + . FI_gene_label "NDUFS5P6^ENSG00000255531.1" ; ID "ARFGEF1--NDUFS5P6^ENST00000529136.1" ; Parent "ARFGEF1--NDUFS5P6^NDUFS5P6^ENSG00000255531.1" ; exon_id "ENSE00002161646.1" ; exon_number 1 ; gene_id "ARFGEF1--NDUFS5P6^NDUFS5P6^ENSG00000255531.1" ; gene_name NDUFS5P6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000165217.1" ; havana_transcript "OTTHUMT00000382726.1" ; hgnc_id "HGNC:44044" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,67849044,67849338,+" ; tag pseudo_consens basic ; transcript_id "ARFGEF1--NDUFS5P6^ENST00000529136.1" ; transcript_name "NDUFS5P6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
CEP128--AL359232.1 HAVANA gene 43945 48332 . + . FI_gene_label "AL359232.1^ENSG00000258561.2" ; ID "CEP128--AL359232.1^AL359232.1^ENSG00000258561.2" ; exon_id "ENSE00003881321.1" ; exon_number 1 ; gene_id "CEP128--AL359232.1^AL359232.1^ENSG00000258561.2" ; gene_name "AL359232.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000171191.2" ; havana_transcript "OTTHUMT00000412210.2" ; level 2 ; orig_coord_info "chr14,66507291,66507849,-" ; tag TAGENE ; transcript_id "CEP128--AL359232.1^ENST00000555377.2" ; transcript_name "AL359232.1-203" ; transcript_support_level 3 ; transcript_type lncRNA
CEP128--AL359232.1 HAVANA RNA 43945 48332 . + . FI_gene_label "AL359232.1^ENSG00000258561.2" ; ID "CEP128--AL359232.1^ENST00000555377.2" ; Parent "CEP128--AL359232.1^AL359232.1^ENSG00000258561.2" ; exon_id "ENSE00003881321.1" ; exon_number 1 ; gene_id "CEP128--AL359232.1^AL359232.1^ENSG00000258561.2" ; gene_name "AL359232.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000171191.2" ; havana_transcript "OTTHUMT00000412210.2" ; level 2 ; orig_coord_info "chr14,66507291,66507849,-" ; tag TAGENE ; transcript_id "CEP128--AL359232.1^ENST00000555377.2" ; transcript_name "AL359232.1-203" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
EFL1--GOLGA6L11P HAVANA gene 28063 33687 . + . FI_gene_label "GOLGA6L11P^ENSG00000223698.3" ; ID "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; exon_id "ENSE00001742768.1" ; exon_number 1 ; gene_id "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; gene_name GOLGA6L11P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000045042.2" ; havana_transcript "OTTHUMT00000104689.2" ; hgnc_id "HGNC:23958" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrY,24168187,24168270,+" ; tag pseudo_consens basic ; transcript_id "EFL1--GOLGA6L11P^ENST00000417252.2" ; transcript_name "GOLGA6L11P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
EFL1--GOLGA6L11P HAVANA RNA 28063 33687 . + . FI_gene_label "GOLGA6L11P^ENSG00000223698.3" ; ID "EFL1--GOLGA6L11P^ENST00000417252.2" ; Parent "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; exon_id "ENSE00001742768.1" ; exon_number 1 ; gene_id "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; gene_name GOLGA6L11P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000045042.2" ; havana_transcript "OTTHUMT00000104689.2" ; hgnc_id "HGNC:23958" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrY,24168187,24168270,+" ; tag pseudo_consens basic ; transcript_id "EFL1--GOLGA6L11P^ENST00000417252.2" ; transcript_name "GOLGA6L11P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
LINC01674--POTED HAVANA gene 2222 5581 . + . FI_gene_label "LINC01674^ENSG00000228159.2" ; ID "LINC01674--POTED^LINC01674^ENSG00000228159.2" ; exon_id "ENSE00001662293.1" ; exon_number 1 ; gene_id "LINC01674--POTED^LINC01674^ENSG00000228159.2" ; gene_name LINC01674 ; gene_type lncRNA ; havana_gene "OTTHUMG00000074207.4" ; havana_transcript "OTTHUMT00000157670.1" ; hgnc_id "HGNC:52462" ; level 1 ; orig_coord_info "chr21,13546033,13546123,+" ; tag exp_conf ; transcript_id "LINC01674--POTED^ENST00000427446.1" ; transcript_name "LINC01674-201" ; transcript_support_level 3 ; transcript_type lncRNA
LINC01674--POTED HAVANA RNA 2222 5581 . + . FI_gene_label "LINC01674^ENSG00000228159.2" ; ID "LINC01674--POTED^ENST00000427446.1" ; Parent "LINC01674--POTED^LINC01674^ENSG00000228159.2" ; exon_id "ENSE00001662293.1" ; exon_number 1 ; gene_id "LINC01674--POTED^LINC01674^ENSG00000228159.2" ; gene_name LINC01674 ; gene_type lncRNA ; havana_gene "OTTHUMG00000074207.4" ; havana_transcript "OTTHUMT00000157670.1" ; hgnc_id "HGNC:52462" ; level 1 ; orig_coord_info "chr21,13546033,13546123,+" ; tag exp_conf ; transcript_id "LINC01674--POTED^ENST00000427446.1" ; transcript_name "LINC01674-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
MBNL2--LINC00456 HAVANA gene 20522 22251 . + . FI_gene_label "LINC00456^ENSG00000233124.2" ; ID "MBNL2--LINC00456^LINC00456^ENSG00000233124.2" ; exon_id "ENSE00001720156.1" ; exon_number 1 ; gene_id "MBNL2--LINC00456^LINC00456^ENSG00000233124.2" ; gene_name LINC00456 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017237.2" ; havana_transcript "OTTHUMT00000045522.1" ; hgnc_id "HGNC:42804" ; level 1 ; orig_coord_info "chr13,97179327,97179622,-" ; tag exp_conf ; transcript_id "MBNL2--LINC00456^ENST00000453862.1" ; transcript_name "LINC00456-201" ; transcript_support_level 3 ; transcript_type lncRNA
MBNL2--LINC00456 HAVANA RNA 20522 22251 . + . FI_gene_label "LINC00456^ENSG00000233124.2" ; ID "MBNL2--LINC00456^ENST00000453862.1" ; Parent "MBNL2--LINC00456^LINC00456^ENSG00000233124.2" ; exon_id "ENSE00001720156.1" ; exon_number 1 ; gene_id "MBNL2--LINC00456^LINC00456^ENSG00000233124.2" ; gene_name LINC00456 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017237.2" ; havana_transcript "OTTHUMT00000045522.1" ; hgnc_id "HGNC:42804" ; level 1 ; orig_coord_info "chr13,97179327,97179622,-" ; tag exp_conf ; transcript_id "MBNL2--LINC00456^ENST00000453862.1" ; transcript_name "LINC00456-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
PIK3C3--AC079238.1 HAVANA gene 45832 46840 . + . FI_gene_label "AC079238.1^ENSG00000250547.1" ; ID "PIK3C3--AC079238.1^AC079238.1^ENSG00000250547.1" ; exon_id "ENSE00002021373.1" ; exon_number 1 ; gene_id "PIK3C3--AC079238.1^AC079238.1^ENSG00000250547.1" ; gene_name "AC079238.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000161352.1" ; havana_transcript "OTTHUMT00000364632.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr4,163265575,163266583,-" ; tag pseudo_consens basic ; transcript_id "PIK3C3--AC079238.1^ENST00000509840.1" ; transcript_name "AC079238.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
PIK3C3--AC079238.1 HAVANA RNA 45832 46840 . + . FI_gene_label "AC079238.1^ENSG00000250547.1" ; ID "PIK3C3--AC079238.1^ENST00000509840.1" ; Parent "PIK3C3--AC079238.1^AC079238.1^ENSG00000250547.1" ; exon_id "ENSE00002021373.1" ; exon_number 1 ; gene_id "PIK3C3--AC079238.1^AC079238.1^ENSG00000250547.1" ; gene_name "AC079238.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000161352.1" ; havana_transcript "OTTHUMT00000364632.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr4,163265575,163266583,-" ; tag pseudo_consens basic ; transcript_id "PIK3C3--AC079238.1^ENST00000509840.1" ; transcript_name "AC079238.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
RPSAP52--HMGA2 HAVANA gene 1024 4035 . + . FI_gene_label "RPSAP52^ENSG00000241749.4" ; ID "RPSAP52--HMGA2^RPSAP52^ENSG00000241749.4" ; exon_id "ENSE00001887935.1" ; exon_number 1 ; gene_id "RPSAP52--HMGA2^RPSAP52^ENSG00000241749.4" ; gene_name RPSAP52 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000157608.3" ; havana_transcript "OTTHUMT00000349256.2" ; hgnc_id "HGNC:35752" ; level 2 ; orig_coord_info "chr12,65826843,65826974,-" ; tag basic ; transcript_id "RPSAP52--HMGA2^ENST00000489520.2" ; transcript_name "RPSAP52-201" ; transcript_support_level 1 ; transcript_type processed_transcript
RPSAP52--HMGA2 HAVANA RNA 1024 4035 . + . FI_gene_label "RPSAP52^ENSG00000241749.4" ; ID "RPSAP52--HMGA2^ENST00000489520.2" ; Parent "RPSAP52--HMGA2^RPSAP52^ENSG00000241749.4" ; exon_id "ENSE00001887935.1" ; exon_number 1 ; gene_id "RPSAP52--HMGA2^RPSAP52^ENSG00000241749.4" ; gene_name RPSAP52 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000157608.3" ; havana_transcript "OTTHUMT00000349256.2" ; hgnc_id "HGNC:35752" ; level 2 ; orig_coord_info "chr12,65826843,65826974,-" ; tag basic ; transcript_id "RPSAP52--HMGA2^ENST00000489520.2" ; transcript_name "RPSAP52-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TMEM233--AC073348.2 HAVANA gene 9841 12254 . + . FI_gene_label "AC073348.2^ENSG00000287592.1" ; ID "TMEM233--AC073348.2^AC073348.2^ENSG00000287592.1" ; exon_id "ENSE00003873859.1" ; exon_number 1 ; gene_id "TMEM233--AC073348.2^AC073348.2^ENSG00000287592.1" ; gene_name "AC073348.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194191.1" ; havana_transcript "OTTHUMT00000512355.1" ; level 2 ; orig_coord_info "chr7,113494688,113494870,-" ; tag basic TAGENE ; transcript_id "TMEM233--AC073348.2^ENST00000670885.1" ; transcript_name "AC073348.2-201" ; transcript_type lncRNA
TMEM233--AC073348.2 HAVANA RNA 9841 12254 . + . FI_gene_label "AC073348.2^ENSG00000287592.1" ; ID "TMEM233--AC073348.2^ENST00000670885.1" ; Parent "TMEM233--AC073348.2^AC073348.2^ENSG00000287592.1" ; exon_id "ENSE00003873859.1" ; exon_number 1 ; gene_id "TMEM233--AC073348.2^AC073348.2^ENSG00000287592.1" ; gene_name "AC073348.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194191.1" ; havana_transcript "OTTHUMT00000512355.1" ; level 2 ; orig_coord_info "chr7,113494688,113494870,-" ; tag basic TAGENE ; transcript_id "TMEM233--AC073348.2^ENST00000670885.1" ; transcript_name "AC073348.2-201" ; transcript_type lncRNA
L1 and L2 created:
TPTE--BAGE2 HAVANA gene 27330 39533 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "TPTE--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
TPTE--BAGE2 HAVANA RNA 27330 39533 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "TPTE--BAGE2^ENST00000470054.5" ; Parent "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "TPTE--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
TTC8--AL352955.1 HAVANA gene 25696 26272 . + . FI_gene_label "AL352955.1^ENSG00000258496.1" ; ID "TTC8--AL352955.1^AL352955.1^ENSG00000258496.1" ; exon_id "ENSE00002438573.1" ; exon_number 1 ; gene_id "TTC8--AL352955.1^AL352955.1^ENSG00000258496.1" ; gene_name "AL352955.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000171352.1" ; havana_transcript "OTTHUMT00000413100.1" ; level 2 ; orig_coord_info "chr14,87251103,87251221,+" ; tag basic ; transcript_id "TTC8--AL352955.1^ENST00000555490.1" ; transcript_name "AL352955.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
TTC8--AL352955.1 HAVANA RNA 25696 26272 . + . FI_gene_label "AL352955.1^ENSG00000258496.1" ; ID "TTC8--AL352955.1^ENST00000555490.1" ; Parent "TTC8--AL352955.1^AL352955.1^ENSG00000258496.1" ; exon_id "ENSE00002438573.1" ; exon_number 1 ; gene_id "TTC8--AL352955.1^AL352955.1^ENSG00000258496.1" ; gene_name "AL352955.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000171352.1" ; havana_transcript "OTTHUMT00000413100.1" ; level 2 ; orig_coord_info "chr14,87251103,87251221,+" ; tag basic ; transcript_id "TTC8--AL352955.1^ENST00000555490.1" ; transcript_name "AL352955.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TTC8--AL358292.1 HAVANA gene 25696 28021 . + . FI_gene_label "AL358292.1^ENSG00000259061.1" ; ID "TTC8--AL358292.1^AL358292.1^ENSG00000259061.1" ; exon_id "ENSE00002472558.1" ; exon_number 1 ; gene_id "TTC8--AL358292.1^AL358292.1^ENSG00000259061.1" ; gene_name "AL358292.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000171351.2" ; havana_transcript "OTTHUMT00000413099.2" ; level 2 ; orig_coord_info "chr14,86936640,86936827,+" ; tag basic ; transcript_id "TTC8--AL358292.1^ENST00000554181.1" ; transcript_name "AL358292.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
TTC8--AL358292.1 HAVANA RNA 25696 28021 . + . FI_gene_label "AL358292.1^ENSG00000259061.1" ; ID "TTC8--AL358292.1^ENST00000554181.1" ; Parent "TTC8--AL358292.1^AL358292.1^ENSG00000259061.1" ; exon_id "ENSE00002472558.1" ; exon_number 1 ; gene_id "TTC8--AL358292.1^AL358292.1^ENSG00000259061.1" ; gene_name "AL358292.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000171351.2" ; havana_transcript "OTTHUMT00000413099.2" ; level 2 ; orig_coord_info "chr14,86936640,86936827,+" ; tag basic ; transcript_id "TTC8--AL358292.1^ENST00000554181.1" ; transcript_name "AL358292.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
TXLNG--AC068472.1 HAVANA gene 17456 18336 . + . FI_gene_label "AC068472.1^ENSG00000240881.1" ; ID "TXLNG--AC068472.1^AC068472.1^ENSG00000240881.1" ; exon_id "ENSE00001820006.1" ; exon_number 1 ; gene_id "TXLNG--AC068472.1^AC068472.1^ENSG00000240881.1" ; gene_name "AC068472.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000158317.1" ; havana_transcript "OTTHUMT00000350668.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,23520322,23521202,+" ; tag pseudo_consens basic ; transcript_id "TXLNG--AC068472.1^ENST00000474589.1" ; transcript_name "AC068472.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TXLNG--AC068472.1 HAVANA RNA 17456 18336 . + . FI_gene_label "AC068472.1^ENSG00000240881.1" ; ID "TXLNG--AC068472.1^ENST00000474589.1" ; Parent "TXLNG--AC068472.1^AC068472.1^ENSG00000240881.1" ; exon_id "ENSE00001820006.1" ; exon_number 1 ; gene_id "TXLNG--AC068472.1^AC068472.1^ENSG00000240881.1" ; gene_name "AC068472.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000158317.1" ; havana_transcript "OTTHUMT00000350668.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,23520322,23521202,+" ; tag pseudo_consens basic ; transcript_id "TXLNG--AC068472.1^ENST00000474589.1" ; transcript_name "AC068472.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TXLNG--AC100767.2 HAVANA gene 17456 19148 . + . FI_gene_label "AC100767.2^ENSG00000271491.1" ; ID "TXLNG--AC100767.2^AC100767.2^ENSG00000271491.1" ; exon_id "ENSE00003462462.1" ; exon_number 1 ; gene_id "TXLNG--AC100767.2^AC100767.2^ENSG00000271491.1" ; gene_name "AC100767.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184834.1" ; havana_transcript "OTTHUMT00000469248.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,23377176,23377644,-" ; tag pseudo_consens basic ; transcript_id "TXLNG--AC100767.2^ENST00000604840.1" ; transcript_name "AC100767.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TXLNG--AC100767.2 HAVANA RNA 17456 19148 . + . FI_gene_label "AC100767.2^ENSG00000271491.1" ; ID "TXLNG--AC100767.2^ENST00000604840.1" ; Parent "TXLNG--AC100767.2^AC100767.2^ENSG00000271491.1" ; exon_id "ENSE00003462462.1" ; exon_number 1 ; gene_id "TXLNG--AC100767.2^AC100767.2^ENSG00000271491.1" ; gene_name "AC100767.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184834.1" ; havana_transcript "OTTHUMT00000469248.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,23377176,23377644,-" ; tag pseudo_consens basic ; transcript_id "TXLNG--AC100767.2^ENST00000604840.1" ; transcript_name "AC100767.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TXLNG--LINC02718 HAVANA gene 20286 22013 . + . FI_gene_label "LINC02718^ENSG00000255418.6" ; ID "TXLNG--LINC02718^LINC02718^ENSG00000255418.6" ; exon_id "ENSE00002144540.1" ; exon_number 1 ; gene_id "TXLNG--LINC02718^LINC02718^ENSG00000255418.6" ; gene_name LINC02718 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166075.4" ; havana_transcript "OTTHUMT00000387733.1" ; hgnc_id "HGNC:54235" ; level 2 ; orig_coord_info "chr11,23164900,23165093,+" ; transcript_id "TXLNG--LINC02718^ENST00000530576.5" ; transcript_name "LINC02718-201" ; transcript_support_level 2 ; transcript_type lncRNA
TXLNG--LINC02718 HAVANA RNA 20286 22013 . + . FI_gene_label "LINC02718^ENSG00000255418.6" ; ID "TXLNG--LINC02718^ENST00000530576.5" ; Parent "TXLNG--LINC02718^LINC02718^ENSG00000255418.6" ; exon_id "ENSE00002144540.1" ; exon_number 1 ; gene_id "TXLNG--LINC02718^LINC02718^ENSG00000255418.6" ; gene_name LINC02718 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166075.4" ; havana_transcript "OTTHUMT00000387733.1" ; hgnc_id "HGNC:54235" ; level 2 ; orig_coord_info "chr11,23164900,23165093,+" ; transcript_id "TXLNG--LINC02718^ENST00000530576.5" ; transcript_name "LINC02718-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
TXLNG--LINC02726 HAVANA gene 17456 20851 . + . FI_gene_label "LINC02726^ENSG00000255193.1" ; ID "TXLNG--LINC02726^LINC02726^ENSG00000255193.1" ; exon_id "ENSE00002167903.1" ; exon_number 1 ; gene_id "TXLNG--LINC02726^LINC02726^ENSG00000255193.1" ; gene_name LINC02726 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166086.1" ; havana_transcript "OTTHUMT00000387785.1" ; hgnc_id "HGNC:54243" ; level 2 ; orig_coord_info "chr11,23730588,23730886,+" ; tag basic ; transcript_id "TXLNG--LINC02726^ENST00000534068.1" ; transcript_name "LINC02726-201" ; transcript_support_level 3 ; transcript_type lncRNA
TXLNG--LINC02726 HAVANA RNA 17456 20851 . + . FI_gene_label "LINC02726^ENSG00000255193.1" ; ID "TXLNG--LINC02726^ENST00000534068.1" ; Parent "TXLNG--LINC02726^LINC02726^ENSG00000255193.1" ; exon_id "ENSE00002167903.1" ; exon_number 1 ; gene_id "TXLNG--LINC02726^LINC02726^ENSG00000255193.1" ; gene_name LINC02726 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166086.1" ; havana_transcript "OTTHUMT00000387785.1" ; hgnc_id "HGNC:54243" ; level 2 ; orig_coord_info "chr11,23730588,23730886,+" ; tag basic ; transcript_id "TXLNG--LINC02726^ENST00000534068.1" ; transcript_name "LINC02726-201" ; transcript_support_level 3 ; transcript_type lncRNA
744 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1535 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 84 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed