[W::hts_idx_load3] The index file is older than the data file: BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	22651915
Known Splicing Events:	22373594
Partial Novel Splicing Events:	136541
Novel Splicing Events:	125022
Filtered Splicing Events:	16758

Total splicing  Junctions:	126082
Known Splicing Junctions:	114330
Partial Novel Splicing Junctions:	4116
Novel Splicing Junctions:	7636

===================================================================
Create BED file ...
Create Interact file ...