[W::hts_idx_load3] The index file is older than the data file: BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	28565037
Known Splicing Events:	28255483
Partial Novel Splicing Events:	149220
Novel Splicing Events:	142663
Filtered Splicing Events:	17671

Total splicing  Junctions:	121846
Known Splicing Junctions:	111585
Partial Novel Splicing Junctions:	3735
Novel Splicing Junctions:	6526

===================================================================
Create BED file ...
Create Interact file ...