Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/13a0da7a90913d31925104f03d721b/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/db6a0a241ea3c281ada9be8bd77f77/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/db6a0a241ea3c281ada9be8bd77f77/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/784ad146e5f68d5755ea7ad498b37f/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/45a8a3c95f859aec40650d46f16881/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 28565037
[W::hts_idx_load3] The index file is older than the data file: BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	28565037
Known Splicing Events:	28255483
Partial Novel Splicing Events:	149220
Novel Splicing Events:	142663
Filtered Splicing Events:	17671

Total splicing  Junctions:	121846
Known Splicing Junctions:	111585
Partial Novel Splicing Junctions:	3735
Novel Splicing Junctions:	6526

===================================================================
Create BED file ...
Create Interact file ...