Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_1.md.bam --METRICS_FILE 786-O_FFPE_RNA_0001_B23LG7FLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:30:10.573 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:30:10 GMT 2026] MarkDuplicates --INPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_1.md.bam --METRICS_FILE 786-O_FFPE_RNA_0001_B23LG7FLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:30:10 GMT 2026] Executing as ?@nf-c0e09bd395339969a5f3d0768b42216d-ae6ed-ndpqp on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:30:10 MarkDuplicates Start of doWork freeMemory: 105828520; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:30:10 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:30:10 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,049,369
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 3389 as yet unmatched pairs. 912 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,477,330
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 5306 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:2,508,966
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 7897 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:7,777,292
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 11122 as yet unmatched pairs. 829 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:9,263,981
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 13141 as yet unmatched pairs. 630 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,122,099
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 15254 as yet unmatched pairs. 367 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:13,778,900
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 17311 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:16,138,163
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 21270 as yet unmatched pairs. 1746 records in RAM.
INFO 2026-06-08 08:30:30 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:18,691,832
INFO 2026-06-08 08:30:30 MarkDuplicates Tracking 22508 as yet unmatched pairs. 793 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:19,243,615
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 24724 as yet unmatched pairs. 714 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:21,828,375
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 26382 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:23,845,770
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 28663 as yet unmatched pairs. 265 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:26,561,058
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 30710 as yet unmatched pairs. 272 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:27,916,100
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 32855 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:30:41 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:31,423,790
INFO 2026-06-08 08:30:41 MarkDuplicates Tracking 35372 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:32,672,849
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 38761 as yet unmatched pairs. 1233 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:35,388,692
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 40141 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:37,475,509
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 42496 as yet unmatched pairs. 266 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:39,370,050
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 44768 as yet unmatched pairs. 405 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:39,967,155
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 48614 as yet unmatched pairs. 2227 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:42,463,862
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 48628 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:43,451,960
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 51234 as yet unmatched pairs. 273 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:44,801,884
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 53375 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:46,274,190
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 55555 as yet unmatched pairs. 247 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:52,431,405
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 57909 as yet unmatched pairs. 347 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:56,707,580
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 59950 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:67,687,725
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 62046 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:85,580,947
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 65575 as yet unmatched pairs. 1632 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:92,876,366
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 66077 as yet unmatched pairs. 102 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:97,691,757
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 68601 as yet unmatched pairs. 581 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:103,014,565
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 73749 as yet unmatched pairs. 3525 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:109,324,954
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 73673 as yet unmatched pairs. 1348 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:112,416,223
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 74790 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:114,424,596
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 77550 as yet unmatched pairs. 864 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:116,389,599
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 83965 as yet unmatched pairs. 5180 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:116,967,056
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 81840 as yet unmatched pairs. 889 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:119,743,885
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 90114 as yet unmatched pairs. 6968 records in RAM.
INFO 2026-06-08 08:31:24 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:119,918,455
INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 93243 as yet unmatched pairs. 7855 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:119,926,567
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 99778 as yet unmatched pairs. 12179 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:119,955,139
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 102754 as yet unmatched pairs. 13035 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:120,005,501
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 99561 as yet unmatched pairs. 7612 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:120,549,067
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 93805 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:144,906,030
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 95812 as yet unmatched pairs. 1151 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:146,679,062
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 95935 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:148,749,017
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 96978 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:149,811,914
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 99451 as yet unmatched pairs. 1728 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:149,909,821
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 100149 as yet unmatched pairs. 969 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:151,067,234
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 102263 as yet unmatched pairs. 987 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:152,305,686
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 103581 as yet unmatched pairs. 388 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,587
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 108706 as yet unmatched pairs. 3331 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,236
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 108015 as yet unmatched pairs. 702 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:155,134,086
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 109748 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:155,480,132
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 111984 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:155,963,038
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 114392 as yet unmatched pairs. 749 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,958
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 120553 as yet unmatched pairs. 4140 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:156,670,297
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 119173 as yet unmatched pairs. 324 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:159,016,670
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 121478 as yet unmatched pairs. 198 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 3s. Last read position: chr1:162,020,081
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 123519 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,383
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 128924 as yet unmatched pairs. 3324 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:174,702,229
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 127821 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:182,388,670
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 130066 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:186,323,721
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 134052 as yet unmatched pairs. 2118 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:198,253,109
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 133980 as yet unmatched pairs. 205 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:202,943,830
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 137146 as yet unmatched pairs. 1218 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:205,718,257
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 138693 as yet unmatched pairs. 670 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:212,100,250
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 140191 as yet unmatched pairs. 220 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:218,436,029
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 142210 as yet unmatched pairs. 205 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:224,404,455
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 144666 as yet unmatched pairs. 678 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:226,071,555
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 146168 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:229,297,597
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 149087 as yet unmatched pairs. 704 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr1:235,154,910
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 151003 as yet unmatched pairs. 101 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr1:243,695,638
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 154295 as yet unmatched pairs. 1364 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr1:248,813,057
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 155336 as yet unmatched pairs. 243 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:9,630,241
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 158837 as yet unmatched pairs. 156514 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:17,649,584
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 159747 as yet unmatched pairs. 157390 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:24,742,135
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 162736 as yet unmatched pairs. 160334 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:27,133,158
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 163935 as yet unmatched pairs. 161491 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr2:28,411,937
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 167697 as yet unmatched pairs. 165221 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 3s. Last read position: chr2:28,783,910
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 195322 as yet unmatched pairs. 192826 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:32,442,322
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 170918 as yet unmatched pairs. 168398 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 236012 as yet unmatched pairs. 161890 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 850453 as yet unmatched pairs. 103772 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 1113475 as yet unmatched pairs. 78480 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,410
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 1138879 as yet unmatched pairs. 76452 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:37,138,513
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 1187738 as yet unmatched pairs. 70766 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:43,560,348
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 1185624 as yet unmatched pairs. 68617 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:48,471,036
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 1183387 as yet unmatched pairs. 66338 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:55,233,370
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 1181768 as yet unmatched pairs. 64681 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:61,344,019
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 1179110 as yet unmatched pairs. 61994 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:68,180,770
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 1177382 as yet unmatched pairs. 60233 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:71,076,647
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 1175738 as yet unmatched pairs. 58557 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:74,363,034
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 1173544 as yet unmatched pairs. 56318 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:85,322,641
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 1172363 as yet unmatched pairs. 55115 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:88,562,345
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 1169007 as yet unmatched pairs. 51729 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:96,809,338
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 1167261 as yet unmatched pairs. 49946 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:101,264,897
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 1165166 as yet unmatched pairs. 47817 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:108,676,667
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 1164081 as yet unmatched pairs. 46702 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:109,808,338
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 1161796 as yet unmatched pairs. 44399 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:112,331,699
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 1160585 as yet unmatched pairs. 43171 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:118,843,113
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 1159248 as yet unmatched pairs. 41816 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:130,182,636
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 1159879 as yet unmatched pairs. 42414 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:135,755,679
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 1154956 as yet unmatched pairs. 37448 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:151,468,480
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 1153288 as yet unmatched pairs. 35707 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:159,776,418
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 1151222 as yet unmatched pairs. 33607 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:171,785,390
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 1149296 as yet unmatched pairs. 31646 records in RAM.
INFO 2026-06-08 08:33:26 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:177,215,818
INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 1147621 as yet unmatched pairs. 29935 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:183,001,961
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 1145550 as yet unmatched pairs. 27834 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:190,881,019
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 1144645 as yet unmatched pairs. 26885 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:200,439,270
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 1141307 as yet unmatched pairs. 23502 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr2:203,441,269
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 1139392 as yet unmatched pairs. 21556 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:207,149,720
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 1137196 as yet unmatched pairs. 19324 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,244
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 1135492 as yet unmatched pairs. 17591 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:218,636,425
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 1132894 as yet unmatched pairs. 14956 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:219,461,919
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 1130978 as yet unmatched pairs. 13016 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:224,585,013
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 1128087 as yet unmatched pairs. 10057 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:231,455,038
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 1126481 as yet unmatched pairs. 8424 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:235,042,020
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 1124249 as yet unmatched pairs. 6153 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:240,462,473
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 1124704 as yet unmatched pairs. 6559 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:241,496,502
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 1119320 as yet unmatched pairs. 1143 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr3:9,840,247
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 1116919 as yet unmatched pairs. 68460 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:13,353,626
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 1115023 as yet unmatched pairs. 66536 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:23,564,933
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 1113084 as yet unmatched pairs. 64566 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:33,021,605
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 1111485 as yet unmatched pairs. 62916 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:39,100,827
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 1109017 as yet unmatched pairs. 60405 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr3:42,633,722
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 1106879 as yet unmatched pairs. 58246 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:47,163,862
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 1104773 as yet unmatched pairs. 56123 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:47,918,762
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 1104723 as yet unmatched pairs. 56046 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:48,961,657
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 1100930 as yet unmatched pairs. 52228 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:49,123,965
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 1099416 as yet unmatched pairs. 50692 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:49,533,072
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 1096091 as yet unmatched pairs. 47335 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:50,256,218
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 1094918 as yet unmatched pairs. 46136 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:51,993,713
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 1091591 as yet unmatched pairs. 42784 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:52,687,247
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 1089159 as yet unmatched pairs. 40335 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:53,242,213
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 1093173 as yet unmatched pairs. 44320 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:58,148,812
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 1085421 as yet unmatched pairs. 36536 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:71,690,148
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 1082507 as yet unmatched pairs. 33583 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:98,799,495
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 1082322 as yet unmatched pairs. 33334 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:100,866,879
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 1078558 as yet unmatched pairs. 29553 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:114,350,431
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 1077646 as yet unmatched pairs. 28600 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:123,620,242
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 1075467 as yet unmatched pairs. 26374 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:127,017,461
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 1072519 as yet unmatched pairs. 23401 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:129,431,563
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 1070076 as yet unmatched pairs. 20930 records in RAM.
INFO 2026-06-08 08:34:33 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:134,370,950
INFO 2026-06-08 08:34:33 MarkDuplicates Tracking 1068900 as yet unmatched pairs. 19722 records in RAM.
INFO 2026-06-08 08:34:35 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:146,124,136
INFO 2026-06-08 08:34:35 MarkDuplicates Tracking 1065973 as yet unmatched pairs. 16746 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:154,289,756
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 1063511 as yet unmatched pairs. 14256 records in RAM.
INFO 2026-06-08 08:34:38 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:171,612,268
INFO 2026-06-08 08:34:38 MarkDuplicates Tracking 1061403 as yet unmatched pairs. 12114 records in RAM.
INFO 2026-06-08 08:34:40 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:181,713,253
INFO 2026-06-08 08:34:40 MarkDuplicates Tracking 1060758 as yet unmatched pairs. 11427 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:184,306,807
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 1057535 as yet unmatched pairs. 8183 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:186,048,700
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 1056256 as yet unmatched pairs. 6880 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:193,643,600
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 1053517 as yet unmatched pairs. 4106 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:196,577,787
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 1050979 as yet unmatched pairs. 1536 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr4:967,019
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 1048873 as yet unmatched pairs. 48212 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:1,728,682
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 1049043 as yet unmatched pairs. 48351 records in RAM.
INFO 2026-06-08 08:34:52 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:2,174,716
INFO 2026-06-08 08:34:52 MarkDuplicates Tracking 1043803 as yet unmatched pairs. 43087 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:5,809,573
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 1041640 as yet unmatched pairs. 40886 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:10,075,374
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 1042255 as yet unmatched pairs. 41466 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:23,814,194
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 1037589 as yet unmatched pairs. 36770 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:39,890,294
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 1035946 as yet unmatched pairs. 35096 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr4:46,724,088
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 1033313 as yet unmatched pairs. 32422 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:55,396,215
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 1032073 as yet unmatched pairs. 31148 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:57,025,417
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 1030168 as yet unmatched pairs. 29225 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:57,110,185
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 1038108 as yet unmatched pairs. 37141 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:73,148,956
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 1024974 as yet unmatched pairs. 23968 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:77,720,563
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 1022211 as yet unmatched pairs. 21157 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:87,980,114
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 1024549 as yet unmatched pairs. 23468 records in RAM.
INFO 2026-06-08 08:35:14 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:101,099,702
INFO 2026-06-08 08:35:14 MarkDuplicates Tracking 1018406 as yet unmatched pairs. 17302 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:113,978,747
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 1016848 as yet unmatched pairs. 15703 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr4:122,929,122
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 1014351 as yet unmatched pairs. 13188 records in RAM.
INFO 2026-06-08 08:35:19 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:139,719,284
INFO 2026-06-08 08:35:19 MarkDuplicates Tracking 1012258 as yet unmatched pairs. 11056 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr4:151,101,006
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 1012055 as yet unmatched pairs. 10819 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:158,171,132
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 1010180 as yet unmatched pairs. 8896 records in RAM.
INFO 2026-06-08 08:35:24 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr4:168,924,995
INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 1008529 as yet unmatched pairs. 7204 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr4:183,259,691
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 1004747 as yet unmatched pairs. 3386 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr4:186,639,726
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 1002199 as yet unmatched pairs. 826 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr5:3,600,637
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 1000418 as yet unmatched pairs. 67714 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr5:14,287,017
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 999123 as yet unmatched pairs. 66375 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:14,487,548
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 996339 as yet unmatched pairs. 63568 records in RAM.
INFO 2026-06-08 08:35:36 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:32,355,796
INFO 2026-06-08 08:35:36 MarkDuplicates Tracking 992792 as yet unmatched pairs. 59976 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:38,990,973
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 990714 as yet unmatched pairs. 57874 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:55,534,667
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 988522 as yet unmatched pairs. 55651 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:66,076,340
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 986871 as yet unmatched pairs. 53970 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:72,194,160
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 986714 as yet unmatched pairs. 53799 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:72,223,761
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 983311 as yet unmatched pairs. 50378 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:77,464,779
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 981611 as yet unmatched pairs. 48657 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:83,512,240
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 983318 as yet unmatched pairs. 50333 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:87,362,583
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 977183 as yet unmatched pairs. 44173 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:96,722,661
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 979093 as yet unmatched pairs. 46048 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:108,380,828
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 973410 as yet unmatched pairs. 40329 records in RAM.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:119,171,849
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 971609 as yet unmatched pairs. 38489 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:131,431,109
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 969397 as yet unmatched pairs. 36231 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:134,205,981
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 968843 as yet unmatched pairs. 35656 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:138,345,263
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 965373 as yet unmatched pairs. 32164 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:139,319,350
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 963534 as yet unmatched pairs. 30298 records in RAM.
INFO 2026-06-08 08:36:04 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:141,173,461
INFO 2026-06-08 08:36:04 MarkDuplicates Tracking 960856 as yet unmatched pairs. 27534 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:141,414,868
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 959376 as yet unmatched pairs. 26030 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:142,314,698
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 956785 as yet unmatched pairs. 23424 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:149,505,460
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 955873 as yet unmatched pairs. 22478 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:151,663,460
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 956879 as yet unmatched pairs. 23461 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:154,813,919
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 951036 as yet unmatched pairs. 17590 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:160,424,255
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 948848 as yet unmatched pairs. 15372 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:168,262,163
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 947265 as yet unmatched pairs. 13755 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:171,405,375
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 949462 as yet unmatched pairs. 15939 records in RAM.
INFO 2026-06-08 08:36:19 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:176,651,634
INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 942750 as yet unmatched pairs. 9198 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:177,604,366
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 939975 as yet unmatched pairs. 6397 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:179,797,889
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 937913 as yet unmatched pairs. 4320 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr5:179,888,298
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 936080 as yet unmatched pairs. 2468 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr6:3,154,457
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 933262 as yet unmatched pairs. 72911 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:8,428,001
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 930976 as yet unmatched pairs. 70586 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:17,543,057
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 928737 as yet unmatched pairs. 68310 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:26,026,953
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 928978 as yet unmatched pairs. 68518 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:26,250,476
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 924284 as yet unmatched pairs. 63808 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:29,604,538
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 922300 as yet unmatched pairs. 61797 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:30,656,596
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 920168 as yet unmatched pairs. 59638 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,159,688
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 918589 as yet unmatched pairs. 58040 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:31,639,080
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 916216 as yet unmatched pairs. 55644 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,195
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 914004 as yet unmatched pairs. 53413 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:33,203,573
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 912724 as yet unmatched pairs. 52125 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:33,670,427
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 909866 as yet unmatched pairs. 49254 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:35,419,635
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 907274 as yet unmatched pairs. 46645 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:38,687,294
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 904929 as yet unmatched pairs. 44269 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:43,132,095
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 902560 as yet unmatched pairs. 41878 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:44,230,595
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 900081 as yet unmatched pairs. 39376 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:52,994,131
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 897854 as yet unmatched pairs. 37111 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:56,552,202
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 896544 as yet unmatched pairs. 35753 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:57,150,730
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 894477 as yet unmatched pairs. 33670 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:75,202,770
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 892735 as yet unmatched pairs. 31889 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:85,637,268
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 891006 as yet unmatched pairs. 30135 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:89,683,278
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 888636 as yet unmatched pairs. 27730 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:105,278,087
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 886308 as yet unmatched pairs. 25378 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:111,310,002
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 884280 as yet unmatched pairs. 23321 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:117,566,853
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 882168 as yet unmatched pairs. 21186 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:127,512,917
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 879558 as yet unmatched pairs. 18548 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:133,390,612
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 877882 as yet unmatched pairs. 16841 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:139,373,822
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 875674 as yet unmatched pairs. 14606 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:149,379,439
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 873847 as yet unmatched pairs. 12763 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:151,352,920
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 871696 as yet unmatched pairs. 10584 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr6:158,062,152
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 869109 as yet unmatched pairs. 7957 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr6:158,785,381
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 873728 as yet unmatched pairs. 12559 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr6:161,109,870
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 865272 as yet unmatched pairs. 4085 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr6:163,570,005
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 868849 as yet unmatched pairs. 7639 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr7:780,131
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 860692 as yet unmatched pairs. 81180 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:2,520,048
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 857701 as yet unmatched pairs. 78164 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:5,217,171
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 855177 as yet unmatched pairs. 75610 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,004
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 864112 as yet unmatched pairs. 84532 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,182
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 864118 as yet unmatched pairs. 84514 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 63s. Last read position: chr7:6,046,128
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 848598 as yet unmatched pairs. 68969 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr7:16,753,969
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 846202 as yet unmatched pairs. 66544 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:24,842,323
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 844355 as yet unmatched pairs. 64666 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:30,632,305
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 842455 as yet unmatched pairs. 62722 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:38,494,517
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 840129 as yet unmatched pairs. 60362 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:44,058,162
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 838486 as yet unmatched pairs. 58700 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 2s. Last read position: chr7:44,884,639
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 836171 as yet unmatched pairs. 56350 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr7:54,755,791
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 836245 as yet unmatched pairs. 56386 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr7:65,373,881
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 831304 as yet unmatched pairs. 51419 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:72,939,890
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 829502 as yet unmatched pairs. 49577 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr7:73,477,917
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 828826 as yet unmatched pairs. 48896 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:74,749,355
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 826335 as yet unmatched pairs. 46391 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr7:75,539,392
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 824904 as yet unmatched pairs. 44950 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr7:76,981,204
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 822817 as yet unmatched pairs. 42840 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr7:90,726,774
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 821149 as yet unmatched pairs. 41144 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr7:92,833,204
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 819352 as yet unmatched pairs. 39320 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr7:94,663,957
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 824377 as yet unmatched pairs. 44326 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr7:98,241,211
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 815014 as yet unmatched pairs. 34925 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:99,573,575
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 812626 as yet unmatched pairs. 32520 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,436,281
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 810670 as yet unmatched pairs. 30546 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr7:101,087,575
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 808270 as yet unmatched pairs. 28128 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:102,541,649
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 806487 as yet unmatched pairs. 26326 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr7:105,112,926
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 804773 as yet unmatched pairs. 24589 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr7:113,117,429
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 802820 as yet unmatched pairs. 22605 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr7:124,841,117
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 800753 as yet unmatched pairs. 20520 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:128,087,006
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 801560 as yet unmatched pairs. 21307 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr7:130,440,640
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 796455 as yet unmatched pairs. 16160 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr7:135,166,673
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 795786 as yet unmatched pairs. 15450 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:138,916,915
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 793214 as yet unmatched pairs. 12855 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr7:140,696,691
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 790458 as yet unmatched pairs. 10061 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr7:148,818,812
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 788706 as yet unmatched pairs. 8274 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr7:151,064,551
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 787616 as yet unmatched pairs. 7165 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr7:152,144,841
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 783426 as yet unmatched pairs. 2955 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr7:158,655,342
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 781467 as yet unmatched pairs. 953 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 2s. Last read position: chr8:11,847,156
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 780008 as yet unmatched pairs. 35257 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr8:22,140,646
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 777342 as yet unmatched pairs. 32568 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr8:23,844,523
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 774542 as yet unmatched pairs. 29754 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr8:30,812,393
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 772462 as yet unmatched pairs. 27655 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr8:38,819,730
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 772305 as yet unmatched pairs. 27482 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr8:42,838,087
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 768222 as yet unmatched pairs. 23387 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:55,802,538
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 766086 as yet unmatched pairs. 21239 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr8:70,600,034
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 764602 as yet unmatched pairs. 19730 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr8:93,922,377
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 762753 as yet unmatched pairs. 17854 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:102,305,172
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 760253 as yet unmatched pairs. 15335 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:123,226,466
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 758336 as yet unmatched pairs. 13388 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr8:130,124,043
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 756369 as yet unmatched pairs. 11373 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,589,298
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 754191 as yet unmatched pairs. 9149 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,553
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 751947 as yet unmatched pairs. 6880 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:144,240,536
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 748127 as yet unmatched pairs. 3048 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr8:144,842,780
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 745272 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr9:4,286,119
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 743913 as yet unmatched pairs. 53025 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr9:13,121,788
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 741218 as yet unmatched pairs. 50245 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:16,704,782
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 739347 as yet unmatched pairs. 48351 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:33,113,175
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 737094 as yet unmatched pairs. 46056 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr9:35,062,311
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 735779 as yet unmatched pairs. 44722 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:35,725,606
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 732619 as yet unmatched pairs. 41532 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr9:39,100,128
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 730840 as yet unmatched pairs. 39686 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr9:70,218,400
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 729239 as yet unmatched pairs. 38061 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr9:83,683,001
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 727287 as yet unmatched pairs. 36093 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr9:93,452,053
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 725732 as yet unmatched pairs. 34515 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr9:100,104,515
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 722945 as yet unmatched pairs. 31701 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr9:110,137,433
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 720925 as yet unmatched pairs. 29672 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr9:115,031,645
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 719923 as yet unmatched pairs. 28658 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr9:120,550,821
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 717492 as yet unmatched pairs. 26212 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr9:124,801,657
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 714693 as yet unmatched pairs. 23383 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr9:127,786,224
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 712631 as yet unmatched pairs. 21298 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr9:128,580,969
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 710466 as yet unmatched pairs. 19123 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr9:129,111,509
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 707971 as yet unmatched pairs. 16607 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr9:130,885,564
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 705495 as yet unmatched pairs. 14113 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr9:132,678,362
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 703082 as yet unmatched pairs. 11685 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr9:134,730,301
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 700874 as yet unmatched pairs. 9460 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:136,407,316
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 698233 as yet unmatched pairs. 6808 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr9:136,862,119
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 695568 as yet unmatched pairs. 4119 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr9:137,255,341
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 692763 as yet unmatched pairs. 1299 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr10:5,748,997
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 690555 as yet unmatched pairs. 32517 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:17,237,226
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 689252 as yet unmatched pairs. 31176 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr10:32,023,006
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 687046 as yet unmatched pairs. 28952 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,646
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 685412 as yet unmatched pairs. 27303 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:58,799,141
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 682951 as yet unmatched pairs. 24833 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:69,379,977
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 681136 as yet unmatched pairs. 22999 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr10:73,746,901
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 678511 as yet unmatched pairs. 20356 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:77,853,510
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 676462 as yet unmatched pairs. 18274 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:87,770,978
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 674486 as yet unmatched pairs. 16279 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr10:93,397,249
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 673797 as yet unmatched pairs. 15576 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr10:97,570,163
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 670223 as yet unmatched pairs. 11987 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr10:101,608,894
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 667906 as yet unmatched pairs. 9647 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr10:103,897,550
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 665978 as yet unmatched pairs. 7701 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr10:116,915,434
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 664902 as yet unmatched pairs. 6588 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr10:124,408,839
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 661743 as yet unmatched pairs. 3406 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr10:128,115,986
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 659900 as yet unmatched pairs. 1541 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr11:611,667
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 657141 as yet unmatched pairs. 61948 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,754,015
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 656183 as yet unmatched pairs. 60973 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:6,393,255
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 652431 as yet unmatched pairs. 57206 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:9,993,009
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 650027 as yet unmatched pairs. 54793 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:17,169,242
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 648167 as yet unmatched pairs. 52906 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:33,068,708
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 646152 as yet unmatched pairs. 50877 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:35,619,342
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 644259 as yet unmatched pairs. 48962 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:46,750,293
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 641964 as yet unmatched pairs. 46656 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:47,801,894
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 639644 as yet unmatched pairs. 44323 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:58,579,465
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 638641 as yet unmatched pairs. 43305 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:61,828,510
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 635413 as yet unmatched pairs. 40031 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,906
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 633362 as yet unmatched pairs. 37971 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,834,275
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 631004 as yet unmatched pairs. 35588 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:64,288,146
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 628810 as yet unmatched pairs. 33372 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:65,183,498
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 626215 as yet unmatched pairs. 30766 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr11:65,554,194
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 626462 as yet unmatched pairs. 30958 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:65,978,879
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 620872 as yet unmatched pairs. 25357 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:67,215,918
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 618685 as yet unmatched pairs. 23145 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:68,413,926
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 616100 as yet unmatched pairs. 20547 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:72,012,963
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 614229 as yet unmatched pairs. 18652 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:75,400,794
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 611735 as yet unmatched pairs. 16145 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:88,334,983
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 609853 as yet unmatched pairs. 14244 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:102,205,908
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 609072 as yet unmatched pairs. 13442 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:112,026,197
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 605805 as yet unmatched pairs. 10149 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:118,503,901
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 603425 as yet unmatched pairs. 7753 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:119,095,015
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 601698 as yet unmatched pairs. 6020 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,707
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 600757 as yet unmatched pairs. 5067 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr11:130,121,628
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 596773 as yet unmatched pairs. 1058 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr12:2,858,970
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 594880 as yet unmatched pairs. 50422 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:6,582,860
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 593636 as yet unmatched pairs. 49159 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr12:6,967,929
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 591021 as yet unmatched pairs. 46526 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:13,214,560
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 588466 as yet unmatched pairs. 43957 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:27,660,912
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 586850 as yet unmatched pairs. 42327 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:42,464,698
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 584897 as yet unmatched pairs. 40361 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:48,771,800
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 582439 as yet unmatched pairs. 37878 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,443
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 581277 as yet unmatched pairs. 36705 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:50,819,642
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 578743 as yet unmatched pairs. 34159 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:53,467,823
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 576961 as yet unmatched pairs. 32350 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:55,800,871
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 574709 as yet unmatched pairs. 30085 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:56,544,888
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 572193 as yet unmatched pairs. 27553 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:57,498,462
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 570660 as yet unmatched pairs. 26003 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:65,170,098
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 567918 as yet unmatched pairs. 23245 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:76,029,037
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 565891 as yet unmatched pairs. 21200 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:93,476,956
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 564063 as yet unmatched pairs. 19351 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:103,930,498
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 562359 as yet unmatched pairs. 17620 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:108,788,085
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 560322 as yet unmatched pairs. 15564 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:112,226,722
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 557728 as yet unmatched pairs. 12963 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr12:118,243,469
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 555384 as yet unmatched pairs. 10598 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:121,245,172
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 553330 as yet unmatched pairs. 8526 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:123,267,211
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 552373 as yet unmatched pairs. 7546 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:124,372,590
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 549341 as yet unmatched pairs. 4503 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:132,570,116
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 546666 as yet unmatched pairs. 1816 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:20,988,108
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 544311 as yet unmatched pairs. 15189 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr13:29,517,617
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 542537 as yet unmatched pairs. 13395 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr13:41,960,958
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 540300 as yet unmatched pairs. 11144 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr13:50,012,281
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 538497 as yet unmatched pairs. 9328 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr13:77,015,442
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 536409 as yet unmatched pairs. 7224 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr13:98,475,356
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 534654 as yet unmatched pairs. 5442 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 2s. Last read position: chr13:110,439,795
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 532245 as yet unmatched pairs. 3002 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr14:20,311,679
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 529401 as yet unmatched pairs. 31079 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 2s. Last read position: chr14:22,973,455
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 527293 as yet unmatched pairs. 28950 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 2s. Last read position: chr14:24,440,338
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 525309 as yet unmatched pairs. 26964 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:35,402,033
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 522840 as yet unmatched pairs. 24484 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,689
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 544111 as yet unmatched pairs. 45718 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,671
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 530904 as yet unmatched pairs. 32484 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr14:55,138,160
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 518473 as yet unmatched pairs. 20025 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:61,738,158
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 517384 as yet unmatched pairs. 18913 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:67,690,370
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 514591 as yet unmatched pairs. 16101 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:73,110,960
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 512592 as yet unmatched pairs. 14080 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:77,027,686
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 510265 as yet unmatched pairs. 11736 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:93,220,326
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 508078 as yet unmatched pairs. 9536 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:102,001,309
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 506329 as yet unmatched pairs. 7742 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:102,980,934
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 504140 as yet unmatched pairs. 5541 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:104,773,961
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 503039 as yet unmatched pairs. 4419 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr15:20,036,209
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 498630 as yet unmatched pairs. 41260 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr15:28,663,419
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 496849 as yet unmatched pairs. 39464 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:38,339,866
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 495103 as yet unmatched pairs. 37707 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:40,462,064
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 492959 as yet unmatched pairs. 35552 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:41,901,034
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 490890 as yet unmatched pairs. 33459 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:43,581,363
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 489024 as yet unmatched pairs. 31586 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:44,717,605
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 488289 as yet unmatched pairs. 30833 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:52,046,510
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 485386 as yet unmatched pairs. 27925 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:57,232,769
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 491753 as yet unmatched pairs. 34282 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:60,349,165
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 482630 as yet unmatched pairs. 25142 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:64,096,073
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 479139 as yet unmatched pairs. 21629 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:66,502,623
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 477151 as yet unmatched pairs. 19633 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:72,199,600
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 480628 as yet unmatched pairs. 23097 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 2s. Last read position: chr15:73,702,526
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 472868 as yet unmatched pairs. 15331 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:75,206,742
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 469619 as yet unmatched pairs. 12070 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:78,471,865
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 467205 as yet unmatched pairs. 9640 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:84,239,817
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 465113 as yet unmatched pairs. 7542 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:89,274,166
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 463692 as yet unmatched pairs. 6113 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:90,784,975
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 461022 as yet unmatched pairs. 3439 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:98,939,278
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 458897 as yet unmatched pairs. 1292 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr16:547,488
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 456678 as yet unmatched pairs. 61849 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:1,592,265
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 453510 as yet unmatched pairs. 58673 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:2,090,464
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 451151 as yet unmatched pairs. 56305 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,514,009
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 448249 as yet unmatched pairs. 53391 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:2,976,839
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 446003 as yet unmatched pairs. 51133 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr16:4,811,138
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 443516 as yet unmatched pairs. 48641 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:14,863,174
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 441625 as yet unmatched pairs. 46734 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:16,114,984
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 440418 as yet unmatched pairs. 45522 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:18,346,328
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 439659 as yet unmatched pairs. 44760 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:18,872,615
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 438231 as yet unmatched pairs. 43328 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:21,847,523
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 437094 as yet unmatched pairs. 42188 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:23,682,147
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 435988 as yet unmatched pairs. 41068 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:28,835,608
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 434185 as yet unmatched pairs. 39258 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:29,808,611
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 432980 as yet unmatched pairs. 38038 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:30,231,447
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 430139 as yet unmatched pairs. 35196 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:31,034,275
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 428182 as yet unmatched pairs. 33226 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:34,267,445
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 425803 as yet unmatched pairs. 30831 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr16:50,086,314
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 423894 as yet unmatched pairs. 28910 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:53,464,246
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 421993 as yet unmatched pairs. 26996 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,275
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 421776 as yet unmatched pairs. 26767 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:57,798,136
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 420275 as yet unmatched pairs. 25253 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:66,609,460
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 415883 as yet unmatched pairs. 20857 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:67,611,235
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 412665 as yet unmatched pairs. 17627 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:68,324,663
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 410183 as yet unmatched pairs. 15133 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:69,718,410
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 410954 as yet unmatched pairs. 15891 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:70,571,760
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 405906 as yet unmatched pairs. 10832 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:74,302,246
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 403686 as yet unmatched pairs. 8601 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:84,066,539
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 401266 as yet unmatched pairs. 6169 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:88,699,651
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 399142 as yet unmatched pairs. 4023 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:89,752,171
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 396410 as yet unmatched pairs. 1273 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 3s. Last read position: chr17:1,361,179
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 402909 as yet unmatched pairs. 104639 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:1,676,017
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 392433 as yet unmatched pairs. 94154 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:3,826,153
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 389500 as yet unmatched pairs. 91207 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 2s. Last read position: chr17:4,946,727
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 389582 as yet unmatched pairs. 91282 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr17:7,223,651
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 385318 as yet unmatched pairs. 87008 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr17:7,503,405
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 383097 as yet unmatched pairs. 84782 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr17:7,904,521
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 380502 as yet unmatched pairs. 82181 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:13,496,407
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 378765 as yet unmatched pairs. 80436 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr17:16,061,657
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 376434 as yet unmatched pairs. 78094 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:17,796,933
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 373971 as yet unmatched pairs. 75627 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:18,255,190
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 372371 as yet unmatched pairs. 74019 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr17:20,232,358
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 371647 as yet unmatched pairs. 73281 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:28,616,722
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 367560 as yet unmatched pairs. 69183 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:28,913,040
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 364606 as yet unmatched pairs. 66222 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:30,894,635
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 362279 as yet unmatched pairs. 63884 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:35,608,261
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 361399 as yet unmatched pairs. 62992 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:37,019,053
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 358482 as yet unmatched pairs. 60074 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:38,735,267
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 356928 as yet unmatched pairs. 58511 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:40,026,306
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 354441 as yet unmatched pairs. 56016 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:41,734,304
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 352342 as yet unmatched pairs. 53915 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:42,405,157
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 350042 as yet unmatched pairs. 51607 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:43,476,571
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 347528 as yet unmatched pairs. 49086 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 2s. Last read position: chr17:44,557,776
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 345406 as yet unmatched pairs. 46952 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:45,121,211
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 343150 as yet unmatched pairs. 44691 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:47,302,734
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 341748 as yet unmatched pairs. 43284 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:48,908,687
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 339149 as yet unmatched pairs. 40679 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,080,294
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 339147 as yet unmatched pairs. 40662 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,676,471
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 335617 as yet unmatched pairs. 37125 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:57,866,498
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 332733 as yet unmatched pairs. 34230 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:59,651,208
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 338701 as yet unmatched pairs. 40192 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,790
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 334095 as yet unmatched pairs. 35579 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:62,029,542
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 326249 as yet unmatched pairs. 27729 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:64,502,010
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 324591 as yet unmatched pairs. 26065 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 57s. Last read position: chr17:68,522,792
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 322945 as yet unmatched pairs. 24415 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 77s. Last read position: chr17:74,872,890
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 319547 as yet unmatched pairs. 21005 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:75,739,993
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 318167 as yet unmatched pairs. 19620 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:76,089,695
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 314600 as yet unmatched pairs. 16045 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 2s. Last read position: chr17:78,168,664
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 312414 as yet unmatched pairs. 13849 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:80,202,160
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 309690 as yet unmatched pairs. 11120 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,363
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 309554 as yet unmatched pairs. 10971 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:81,847,039
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 305674 as yet unmatched pairs. 7081 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:82,057,068
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 302424 as yet unmatched pairs. 3827 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:82,519,957
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 299921 as yet unmatched pairs. 1319 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr18:3,456,521
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 298567 as yet unmatched pairs. 10510 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr18:9,561,992
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 295133 as yet unmatched pairs. 7068 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr18:26,548,279
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 292790 as yet unmatched pairs. 4715 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr18:55,254,676
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 290889 as yet unmatched pairs. 2804 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr18:75,202,128
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 288827 as yet unmatched pairs. 735 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr19:804,380
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 287936 as yet unmatched pairs. 129051 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:1,106,242
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 285260 as yet unmatched pairs. 126366 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:1,460,181
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 281091 as yet unmatched pairs. 122192 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:2,026,808
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 277887 as yet unmatched pairs. 118981 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:2,435,078
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 275356 as yet unmatched pairs. 116444 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:3,543,178
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 272967 as yet unmatched pairs. 114052 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:4,409,439
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 270614 as yet unmatched pairs. 111692 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr19:4,950,954
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 267140 as yet unmatched pairs. 108216 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 2s. Last read position: chr19:5,699,141
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 264941 as yet unmatched pairs. 106012 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:6,374,209
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 262485 as yet unmatched pairs. 103552 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:7,519,935
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 260144 as yet unmatched pairs. 101207 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:8,403,415
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 257265 as yet unmatched pairs. 98321 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 2s. Last read position: chr19:10,252,604
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 255112 as yet unmatched pairs. 96165 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 2s. Last read position: chr19:11,012,946
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 252330 as yet unmatched pairs. 93381 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:12,649,956
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 250284 as yet unmatched pairs. 91334 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:12,954,456
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 247984 as yet unmatched pairs. 89029 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:14,092,006
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 244744 as yet unmatched pairs. 85783 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,105
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 245170 as yet unmatched pairs. 86207 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,751
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 244327 as yet unmatched pairs. 85363 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:16,519,254
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 237909 as yet unmatched pairs. 78940 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:17,341,144
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 235335 as yet unmatched pairs. 76359 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:18,419,613
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 232130 as yet unmatched pairs. 73147 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr19:19,010,121
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 230026 as yet unmatched pairs. 71041 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 2s. Last read position: chr19:27,766,430
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 226970 as yet unmatched pairs. 67979 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr19:34,365,264
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 226704 as yet unmatched pairs. 67702 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:35,269,472
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 223336 as yet unmatched pairs. 64327 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:35,787,269
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 218970 as yet unmatched pairs. 59960 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:37,698,696
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 216242 as yet unmatched pairs. 57229 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:38,717,217
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 215626 as yet unmatched pairs. 56608 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:39,176,628
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 212390 as yet unmatched pairs. 53370 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:39,972,554
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 210059 as yet unmatched pairs. 51037 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:40,578,197
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 207897 as yet unmatched pairs. 48874 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:41,292,394
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 205448 as yet unmatched pairs. 46424 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 2s. Last read position: chr19:42,242,381
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 202198 as yet unmatched pairs. 43168 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:42,290,283
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 201448 as yet unmatched pairs. 42412 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:42,344,030
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 198345 as yet unmatched pairs. 39307 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:43,774,312
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 196118 as yet unmatched pairs. 37066 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 2s. Last read position: chr19:44,992,641
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 193606 as yet unmatched pairs. 34551 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 2s. Last read position: chr19:45,521,320
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 189885 as yet unmatched pairs. 30828 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr19:45,885,134
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 187681 as yet unmatched pairs. 28620 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr19:46,787,557
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 186539 as yet unmatched pairs. 27475 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:48,137,586
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 181754 as yet unmatched pairs. 22689 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:48,965,787
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 184635 as yet unmatched pairs. 25567 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr19:49,557,108
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 177019 as yet unmatched pairs. 17948 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:49,798,866
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 174983 as yet unmatched pairs. 15907 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:50,407,050
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 172575 as yet unmatched pairs. 13488 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:52,849,145
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 169229 as yet unmatched pairs. 10138 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:54,452,700
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 167415 as yet unmatched pairs. 8319 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:55,453,226
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 164210 as yet unmatched pairs. 5110 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr19:57,308,077
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 161254 as yet unmatched pairs. 2151 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:58,556,755
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 160085 as yet unmatched pairs. 979 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 2s. Last read position: chr20:3,026,694
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 156954 as yet unmatched pairs. 35411 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr20:4,699,705
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 154505 as yet unmatched pairs. 32962 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:17,636,598
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 152328 as yet unmatched pairs. 30780 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:25,269,204
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 150779 as yet unmatched pairs. 29229 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr20:32,445,810
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 147770 as yet unmatched pairs. 26218 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:34,996,753
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 145460 as yet unmatched pairs. 23904 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr20:36,606,047
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 143677 as yet unmatched pairs. 22114 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr20:41,169,486
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 141466 as yet unmatched pairs. 19899 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr20:45,812,654
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 139012 as yet unmatched pairs. 17443 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr20:49,270,693
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 136562 as yet unmatched pairs. 14991 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr20:56,365,122
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 134476 as yet unmatched pairs. 12900 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr20:58,895,668
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 134081 as yet unmatched pairs. 12503 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 2s. Last read position: chr20:62,303,604
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 129322 as yet unmatched pairs. 7733 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr20:62,391,336
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 126284 as yet unmatched pairs. 4695 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr20:63,569,461
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 123836 as yet unmatched pairs. 2244 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr21:6,665,188
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 121312 as yet unmatched pairs. 19508 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,034
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 119887 as yet unmatched pairs. 18083 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr21:8,255,907
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 118003 as yet unmatched pairs. 16186 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 0s. Last read position: chr21:8,396,229
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 117294 as yet unmatched pairs. 15475 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,460
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 116769 as yet unmatched pairs. 14949 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,396
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 116339 as yet unmatched pairs. 14518 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr21:8,987,957
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 113749 as yet unmatched pairs. 11924 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr21:32,761,068
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 111957 as yet unmatched pairs. 10130 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr21:37,124,688
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 109989 as yet unmatched pairs. 8160 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr21:44,312,199
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 107767 as yet unmatched pairs. 5936 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr21:45,998,923
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 105261 as yet unmatched pairs. 3427 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr21:46,431,636
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 102864 as yet unmatched pairs. 1024 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr22:19,515,002
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 100327 as yet unmatched pairs. 28491 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr22:21,695,022
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 97987 as yet unmatched pairs. 26151 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr22:26,488,449
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 95501 as yet unmatched pairs. 23665 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:29,292,519
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 97338 as yet unmatched pairs. 25498 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr22:30,425,877
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 91115 as yet unmatched pairs. 19275 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,745
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 89624 as yet unmatched pairs. 17782 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chr22:37,495,879
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 86601 as yet unmatched pairs. 14757 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:38,495,817
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 84606 as yet unmatched pairs. 12758 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:40,411,842
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 81649 as yet unmatched pairs. 9798 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr22:41,880,950
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 79786 as yet unmatched pairs. 7932 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr22:45,547,100
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 78399 as yet unmatched pairs. 6545 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:50,285,811
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 74817 as yet unmatched pairs. 2960 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 2s. Last read position: chrX:1,417,883
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 71457 as yet unmatched pairs. 58403 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:12,976,245
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 81579 as yet unmatched pairs. 68524 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chrX:19,542,123
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 67636 as yet unmatched pairs. 54566 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:30,855,529
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 65310 as yet unmatched pairs. 52236 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chrX:41,223,262
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 64952 as yet unmatched pairs. 51876 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:47,209,944
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 62942 as yet unmatched pairs. 49863 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:48,600,593
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 59044 as yet unmatched pairs. 45964 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chrX:49,077,863
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 56474 as yet unmatched pairs. 43392 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chrX:53,405,597
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 54638 as yet unmatched pairs. 41556 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chrX:53,937,918
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 52213 as yet unmatched pairs. 39127 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:65,739,750
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 51421 as yet unmatched pairs. 38335 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chrX:71,381,793
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 48074 as yet unmatched pairs. 34987 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chrX:77,681,634
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 46324 as yet unmatched pairs. 33237 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:101,625,097
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 44217 as yet unmatched pairs. 31130 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:113,775,193
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 42128 as yet unmatched pairs. 29041 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 2s. Last read position: chrX:120,447,861
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 42577 as yet unmatched pairs. 29490 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:130,067,082
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 38250 as yet unmatched pairs. 25162 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chrX:136,874,164
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 37694 as yet unmatched pairs. 24605 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chrX:149,942,412
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 33785 as yet unmatched pairs. 20694 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chrX:153,725,570
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 32285 as yet unmatched pairs. 19194 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chrX:153,952,672
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 29749 as yet unmatched pairs. 16658 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:154,348,724
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 28127 as yet unmatched pairs. 15036 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chrX:154,353,941
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 27587 as yet unmatched pairs. 14495 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,447
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 34725 as yet unmatched pairs. 21633 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chrX:154,366,330
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 22352 as yet unmatched pairs. 9260 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 2s. Last read position: chrX:154,441,171
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 18862 as yet unmatched pairs. 5770 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chrX:154,547,717
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 15167 as yet unmatched pairs. 2075 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chrM:2,443
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 12663 as yet unmatched pairs. 1265 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: GL000220.1:108,520
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 11325 as yet unmatched pairs. 3522 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,004
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 8114 as yet unmatched pairs. 309 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: GL000220.1:156,576
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 8088 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,621
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 7815 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,682
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 7563 as yet unmatched pairs. 7536 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,598
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 5207 as yet unmatched pairs. 5180 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,758
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 2162 as yet unmatched pairs. 2135 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,682
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 44 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 633194333 records. 0 pairs never matched.
INFO 2026-06-08 08:52:57 MarkDuplicates After buildSortedReadEndLists freeMemory: 204136760; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:52:57 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:53:00 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:53:00 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder Large duplicate set. size = 1353
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,867
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,821
INFO 2026-06-08 08:53:30 OpticalDuplicateFinder Large duplicate set. size = 1163
INFO 2026-06-08 08:53:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,365
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder Large duplicate set. size = 1437
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,584
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder Large duplicate set. size = 1322
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,586
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder Large duplicate set. size = 1782
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,160
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder Large duplicate set. size = 1426
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,068
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,608
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,225
INFO 2026-06-08 08:54:07 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:54:07 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:55:17 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:55:27 MarkDuplicates After generateDuplicateIndexes freeMemory: 10792692128; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-08 08:55:27 MarkDuplicates Marking 235200711 records as duplicates.
INFO 2026-06-08 08:55:27 MarkDuplicates Found 16029403 optical duplicate clusters.
INFO 2026-06-08 08:55:27 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:55:45 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:19,243,615
INFO 2026-06-08 08:56:01 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 16s. Last read position: chr1:39,967,155
INFO 2026-06-08 08:56:18 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 16s. Last read position: chr1:97,691,757
INFO 2026-06-08 08:56:35 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:07s. Time for last 10,000,000: 16s. Last read position: chr1:119,955,139
INFO 2026-06-08 08:56:51 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:24s. Time for last 10,000,000: 16s. Last read position: chr1:154,157,587
INFO 2026-06-08 08:57:07 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:40s. Time for last 10,000,000: 16s. Last read position: chr1:174,702,229
INFO 2026-06-08 08:57:24 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:56s. Time for last 10,000,000: 16s. Last read position: chr1:229,297,597
INFO 2026-06-08 08:57:40 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:13s. Time for last 10,000,000: 16s. Last read position: chr2:32,442,322
INFO 2026-06-08 08:57:56 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:28s. Time for last 10,000,000: 15s. Last read position: chr2:68,180,770
INFO 2026-06-08 08:58:12 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:44s. Time for last 10,000,000: 16s. Last read position: chr2:118,843,113
INFO 2026-06-08 08:58:28 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:01s. Time for last 10,000,000: 16s. Last read position: chr2:203,441,269
INFO 2026-06-08 08:58:44 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:17s. Time for last 10,000,000: 16s. Last read position: chr3:9,840,247
INFO 2026-06-08 08:59:00 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:33s. Time for last 10,000,000: 16s. Last read position: chr3:49,533,072
INFO 2026-06-08 08:59:17 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:49s. Time for last 10,000,000: 16s. Last read position: chr3:123,620,242
INFO 2026-06-08 08:59:33 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:05s. Time for last 10,000,000: 16s. Last read position: chr3:193,643,600
INFO 2026-06-08 08:59:49 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:21s. Time for last 10,000,000: 16s. Last read position: chr4:55,396,215
INFO 2026-06-08 09:00:05 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:38s. Time for last 10,000,000: 16s. Last read position: chr4:151,101,006
INFO 2026-06-08 09:00:22 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 16s. Last read position: chr5:55,534,667
INFO 2026-06-08 09:00:38 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 16s. Last read position: chr5:131,431,109
INFO 2026-06-08 09:00:54 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:27s. Time for last 10,000,000: 16s. Last read position: chr5:160,424,255
INFO 2026-06-08 09:01:10 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:43s. Time for last 10,000,000: 16s. Last read position: chr6:26,026,953
INFO 2026-06-08 09:01:26 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 15s. Last read position: chr6:38,687,294
INFO 2026-06-08 09:01:42 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:15s. Time for last 10,000,000: 16s. Last read position: chr6:111,310,002
INFO 2026-06-08 09:01:59 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 16s. Last read position: chr6:163,570,005
INFO 2026-06-08 09:02:15 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:47s. Time for last 10,000,000: 16s. Last read position: chr7:38,494,517
INFO 2026-06-08 09:02:31 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 15s. Last read position: chr7:90,726,774
INFO 2026-06-08 09:02:47 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:19s. Time for last 10,000,000: 16s. Last read position: chr7:124,841,117
INFO 2026-06-08 09:03:03 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:35s. Time for last 10,000,000: 15s. Last read position: chr8:11,847,156
INFO 2026-06-08 09:03:19 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:51s. Time for last 10,000,000: 16s. Last read position: chr8:123,226,466
INFO 2026-06-08 09:03:35 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:07s. Time for last 10,000,000: 16s. Last read position: chr9:35,062,311
INFO 2026-06-08 09:03:51 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 16s. Last read position: chr9:124,801,657
INFO 2026-06-08 09:04:07 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:40s. Time for last 10,000,000: 16s. Last read position: chr10:5,748,997
INFO 2026-06-08 09:04:23 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:56s. Time for last 10,000,000: 16s. Last read position: chr10:97,570,163
INFO 2026-06-08 09:04:40 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:12s. Time for last 10,000,000: 16s. Last read position: chr11:17,169,242
INFO 2026-06-08 09:04:56 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 15s. Last read position: chr11:65,183,498
INFO 2026-06-08 09:05:12 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:44s. Time for last 10,000,000: 15s. Last read position: chr11:118,503,901
INFO 2026-06-08 09:05:28 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 16s. Last read position: chr12:48,771,800
INFO 2026-06-08 09:05:44 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 16s. Last read position: chr12:103,930,498
INFO 2026-06-08 09:06:00 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:32s. Time for last 10,000,000: 16s. Last read position: chr13:41,960,958
INFO 2026-06-08 09:06:16 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:48s. Time for last 10,000,000: 15s. Last read position: chr14:49,862,671
INFO 2026-06-08 09:06:32 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:04s. Time for last 10,000,000: 15s. Last read position: chr15:20,036,209
INFO 2026-06-08 09:06:47 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:20s. Time for last 10,000,000: 15s. Last read position: chr15:64,096,073
INFO 2026-06-08 09:07:04 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:36s. Time for last 10,000,000: 16s. Last read position: chr16:547,488
INFO 2026-06-08 09:07:20 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:53s. Time for last 10,000,000: 16s. Last read position: chr16:21,847,523
INFO 2026-06-08 09:07:36 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:09s. Time for last 10,000,000: 16s. Last read position: chr16:57,798,136
INFO 2026-06-08 09:07:52 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 15s. Last read position: chr17:1,361,179
INFO 2026-06-08 09:08:09 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 16s. Last read position: chr17:18,255,190
INFO 2026-06-08 09:08:24 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:56s. Time for last 10,000,000: 15s. Last read position: chr17:42,405,157
INFO 2026-06-08 09:08:40 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:12s. Time for last 10,000,000: 15s. Last read position: chr17:59,682,790
INFO 2026-06-08 09:08:55 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:28s. Time for last 10,000,000: 15s. Last read position: chr17:81,847,039
INFO 2026-06-08 09:09:12 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 16s. Last read position: chr19:1,460,181
INFO 2026-06-08 09:09:29 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:01s. Time for last 10,000,000: 17s. Last read position: chr19:10,252,604
INFO 2026-06-08 09:09:45 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:18s. Time for last 10,000,000: 16s. Last read position: chr19:19,010,121
INFO 2026-06-08 09:10:02 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:35s. Time for last 10,000,000: 17s. Last read position: chr19:41,292,394
INFO 2026-06-08 09:10:20 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:52s. Time for last 10,000,000: 17s. Last read position: chr19:48,965,787
INFO 2026-06-08 09:10:37 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 16s. Last read position: chr20:4,699,705
INFO 2026-06-08 09:10:53 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:26s. Time for last 10,000,000: 16s. Last read position: chr20:58,895,668
INFO 2026-06-08 09:11:08 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 15s. Last read position: chr21:8,987,957
INFO 2026-06-08 09:11:24 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 16s. Last read position: chr22:30,425,877
INFO 2026-06-08 09:11:41 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:13s. Time for last 10,000,000: 16s. Last read position: chrX:19,542,123
INFO 2026-06-08 09:11:57 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:29s. Time for last 10,000,000: 16s. Last read position: chrX:77,681,634
INFO 2026-06-08 09:12:13 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:45s. Time for last 10,000,000: 16s. Last read position: chrX:154,353,941
INFO 2026-06-08 09:12:28 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:00s. Time for last 10,000,000: 14s. Last read position: KI270733.1:129,682
INFO 2026-06-08 09:12:40 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:12:40 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:12:40 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:12:40 MarkDuplicates Before output close freeMemory: 5094827784; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-08 09:12:40 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:12:41 MarkDuplicates After output close freeMemory: 203878952; totalMemory: 234881024; maxMemory: 63585648640
[Mon Jun 08 09:12:41 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.51 minutes.
Runtime.totalMemory()=234881024
ls: *cram: No such file or directory
ls: *.crai: No such file or directory