Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/5426bdb5bbfb7c4093a69a07c78a31/RT4_FFPE_RNA_0001_B23LG7FLT4_3_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/46a28fba3e5bc75f771635e3a9811c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/46a28fba3e5bc75f771635e3a9811c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/5426bdb5bbfb7c4093a69a07c78a31/RT4_FFPE_RNA_0001_B23LG7FLT4_3_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory