File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/3cc985fc939d8005ccf7e1472d15e9/.command.log
Size
735 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/0e48f0efc0fd616a8b9f0b584242fa/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/3cc985fc939d8005ccf7e1472d15e9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/3cc985fc939d8005ccf7e1472d15e9/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2: vaf_p90=1.000000 -> CLEAN

Output saved to: NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2.predictions.csv
Summary: 0/1 samples flagged as contaminated