.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BT-20_FFPE_RNA_0001_B23LG7FLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/36a0af443752cf00679617bd454dac/.command.log
Size: 1.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BT-20_FFPE_RNA_0001_B23LG7FLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/0d4db450a8f249b70dc149a77530a3/BT-20_FFPE_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-f79a17a0-988d-46c3-a0fc-cc7f26b06d9c/db/27263bb39e3cbdc9558e9c4c8a77db/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/36a0af443752cf00679617bd454dac/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/5c31cafb266b0f58800790a1e53c3d/BT-20_FFPE_RNA_0001_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/36a0af443752cf00679617bd454dac/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
TVP23C--CDRT4
arriba

  0%|          | 0/1 [00:00<?, ?it/s]
Processing TVP23C--CDRT4:   0%|          | 0/1 [00:00<?, ?it/s]
Processing TVP23C--CDRT4: 100%|██████████| 1/1 [00:00<00:00,  9.10it/s]
Processing TVP23C--CDRT4: 100%|██████████| 1/1 [00:00<00:00,  9.09it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory